Workflow data files for core pathogens
As part of our Nextstrain-maintained analyses we generate workflow files such as sequence FASTAs and metadata TSVs. This page lists the latest versions of these files as well as providing a window into the history of the file uploads across time. The available Auspice visualisations related to these workflow files are shown at the /pathogens page.
Each filename below is a clickable (external) link which will download the latest version of the particular file. Hovering on a filename shows the last known update date however our knowledge of this lags by a day or two and so a more recent copy may be available; if this is the case the link will point to the latest version.
The 'show full history' link details the temporal history of files for a given pathogen.
Support
All source code is freely available under the terms of the GNU Affero General Public License. Screenshots may be used under a CC-BY-4.0 license and attribution to nextstrain.org must be provided.
This work is made possible by the open sharing of genetic data by research groups from all over the world. We gratefully acknowledge their contributions. Special thanks to Kristian Andersen, Josh Batson, David Blazes, Jesse Bloom, Peter Bogner, Anderson Brito, Matt Cotten, Ana Crisan, Tulio de Oliveira, Gytis Dudas, Vivien Dugan, Karl Erlandson, Nuno Faria, Jennifer Gardy, Nate Grubaugh, Becky Kondor, Dylan George, Ian Goodfellow, Betz Halloran, Christian Happi, Jeff Joy, Paul Kellam, Philippe Lemey, Nick Loman, Duncan MacCannell, Erick Matsen, Sebastian Maurer-Stroh, Placide Mbala, Danny Park, Oliver Pybus, Andrew Rambaut, Colin Russell, Pardis Sabeti, Katherine Siddle, Kristof Theys, Dave Wentworth, Shirlee Wohl and Cecile Viboud for comments, suggestions and data sharing.
