{"version":"v2","meta":{"title":"SARS-CoV-2 phylogeny","updated":"2024-01-15","build_url":"https://github.com/neherlab/nextclade_data_workflows","maintainers":[{"name":"Cornelius Roemer","url":"https://neherlab.org"},{"name":"Richard Neher","url":"https://neherlab.org"}],"display_defaults":{"color_by":"clade_membership","distance_measure":"div","map_triplicate":false,"branch_label":"clade","transmission_lines":false},"genome_annotations":{"E":{"end":26472,"seqid":"defaults/reference_seq.gb","start":26245,"strand":"+","type":"CDS"},"M":{"end":27191,"seqid":"defaults/reference_seq.gb","start":26523,"strand":"+","type":"CDS"},"N":{"end":29533,"seqid":"defaults/reference_seq.gb","start":28274,"strand":"+","type":"CDS"},"ORF1a":{"end":13468,"seqid":"defaults/reference_seq.gb","start":266,"strand":"+","type":"CDS"},"ORF1b":{"end":21555,"seqid":"defaults/reference_seq.gb","start":13468,"strand":"+","type":"CDS"},"ORF3a":{"end":26220,"seqid":"defaults/reference_seq.gb","start":25393,"strand":"+","type":"CDS"},"ORF6":{"end":27387,"seqid":"defaults/reference_seq.gb","start":27202,"strand":"+","type":"CDS"},"ORF7a":{"end":27759,"seqid":"defaults/reference_seq.gb","start":27394,"strand":"+","type":"CDS"},"ORF7b":{"end":27887,"seqid":"defaults/reference_seq.gb","start":27756,"strand":"+","type":"CDS"},"ORF8":{"end":28259,"seqid":"defaults/reference_seq.gb","start":27894,"strand":"+","type":"CDS"},"ORF9b":{"end":28577,"seqid":"defaults/reference_seq.gb","start":28284,"strand":"+","type":"CDS"},"S":{"end":25384,"seqid":"defaults/reference_seq.gb","start":21563,"strand":"+","type":"CDS"},"nuc":{"end":29903,"start":1,"strand":"+","type":"source"}},"description":"This phylogeny shows evolutionary relationships of SARS-CoV-2 viruses from the ongoing novel coronavirus COVID-19 pandemic.\n\nAll data we use were deposited in GISAID by scientists around the world.\nWe gratefully acknowledge the authors, originating and submitting laboratories of the genetic sequence and metadata made available through [GISAID](https://gisaid.org) on which this research is based. A full listing of all originating and submitting laboratories is available below. An attribution table is available by clicking on \"Download Data\" at the bottom of the page and then clicking on \"Strain Metadata\" in the resulting dialog box.\n","colorings":[{"key":"clade_membership","title":"Clade","type":"categorical","scale":[["21L","#7DB877"],["22A","#95BD61"],["22B","#A1BE58"],["22C","#AEBD50"],["22D","#BABC4A"],["22E","#C5B945"],["22F","#D0B441"],["23A","#D8AE3E"],["23B","#DFA43B"],["23C","#E49938"],["23D","#E68B35"],["23E","#E67A32"],["23F","#E4672E"],["23G","#E1522A"],["23H","#DE3D27"],["23I","#DB2823"]]},{"key":"gt","title":"Genotype","type":"categorical"},{"key":"designation_date","title":"Designation date","type":"categorical","scale":[["2021-04-21","#4235C0"],["2021-12-07","#539BB4"],["2021-12-14","#549DB2"],["2022-02-25","#66AE96"],["2022-03-16","#6BB18E"],["2022-03-25","#6DB38A"],["2022-03-28","#6EB389"],["2022-03-31","#6FB488"],["2022-04-01","#70B487"],["2022-04-04","#71B486"],["2022-04-06","#71B486"],["2022-04-08","#72B485"],["2022-04-14","#74B582"],["2022-04-19","#75B681"],["2022-04-20","#76B680"],["2022-04-29","#79B77D"],["2022-05-01","#79B77C"],["2022-05-03","#7AB77B"],["2022-05-06","#7BB77A"],["2022-05-08","#7CB879"],["2022-05-09","#7CB879"],["2022-05-10","#7CB878"],["2022-05-11","#7DB878"],["2022-05-12","#7DB878"],["2022-05-14","#7DB877"],["2022-05-18","#7FB975"],["2022-05-19","#7FB975"],["2022-05-21","#80B974"],["2022-05-22","#80B974"],["2022-05-23","#80B973"],["2022-05-25","#81BA73"],["2022-05-29","#82BA71"],["2022-05-30","#83BA71"],["2022-05-31","#83BA70"],["2022-06-01","#83BA70"],["2022-06-02","#84BA70"],["2022-06-03","#84BA6F"],["2022-06-04","#84BA6F"],["2022-06-05","#85BA6F"],["2022-06-06","#85BA6E"],["2022-06-07","#86BB6E"],["2022-06-08","#86BB6E"],["2022-06-09","#86BB6D"],["2022-06-10","#87BB6D"],["2022-06-11","#87BB6D"],["2022-06-12","#87BB6C"],["2022-06-13","#88BB6C"],["2022-06-14","#88BB6C"],["2022-06-18","#8ABB6B"],["2022-06-23","#8BBB69"],["2022-06-24","#8CBB69"],["2022-06-25","#8CBB68"],["2022-06-26","#8DBC68"],["2022-07-01","#8EBC66"],["2022-07-02","#8FBC66"],["2022-07-03","#8FBC66"],["2022-07-07","#91BC65"],["2022-07-08","#91BC64"],["2022-07-09","#91BC64"],["2022-07-12","#92BC63"],["2022-07-14","#93BC62"],["2022-07-15","#93BD62"],["2022-07-16","#94BD62"],["2022-07-20","#95BD60"],["2022-07-21","#96BD60"],["2022-07-22","#96BD60"],["2022-07-24","#97BD5F"],["2022-07-25","#97BD5F"],["2022-07-27","#98BD5E"],["2022-07-28","#98BD5E"],["2022-07-29","#99BD5D"],["2022-07-30","#99BD5D"],["2022-08-01","#9ABD5D"],["2022-08-03","#9ABE5C"],["2022-08-06","#9CBE5B"],["2022-08-08","#9CBE5B"],["2022-08-09","#9DBE5A"],["2022-08-10","#9DBE5A"],["2022-08-12","#9EBE5A"],["2022-08-15","#9FBE59"],["2022-08-16","#9FBE59"],["2022-08-18","#A0BE58"],["2022-08-19","#A0BE58"],["2022-08-21","#A1BE58"],["2022-08-22","#A2BE57"],["2022-08-23","#A2BE57"],["2022-08-24","#A2BE57"],["2022-08-25","#A3BE57"],["2022-08-26","#A3BE56"],["2022-08-27","#A3BE56"],["2022-08-28","#A4BE56"],["2022-08-29","#A4BE56"],["2022-08-30","#A5BE56"],["2022-08-31","#A5BE55"],["2022-09-02","#A6BE55"],["2022-09-03","#A6BE55"],["2022-09-04","#A6BE54"],["2022-09-05","#A7BE54"],["2022-09-06","#A7BE54"],["2022-09-07","#A8BE54"],["2022-09-09","#A8BD53"],["2022-09-12","#AABD53"],["2022-09-14","#AABD52"],["2022-09-15","#ABBD52"],["2022-09-16","#ABBD52"],["2022-09-17","#ABBD51"],["2022-09-18","#ACBD51"],["2022-09-19","#ACBD51"],["2022-09-20","#ADBD51"],["2022-09-21","#ADBD50"],["2022-09-22","#ADBD50"],["2022-09-23","#AEBD50"],["2022-09-24","#AEBD50"],["2022-09-25","#AEBD50"],["2022-09-29","#B0BD4F"],["2022-09-30","#B0BD4E"],["2022-10-03","#B1BD4E"],["2022-10-05","#B2BD4D"],["2022-10-05","#B3BD4D"],["2022-10-07","#B4BD4C"],["2022-10-11","#B5BD4C"],["2022-10-12","#B5BD4C"],["2022-10-13","#B6BD4B"],["2022-10-14","#B6BD4B"],["2022-10-15","#B7BD4B"],["2022-10-16","#B7BD4B"],["2022-10-17","#B7BD4B"],["2022-10-19","#B8BC4B"],["2022-10-20","#B8BC4A"],["2022-10-21","#B9BC4A"],["2022-10-22","#B9BC4A"],["2022-10-23","#B9BC4A"],["2022-10-24","#BABC4A"],["2022-10-31","#BCBB49"],["2022-11-01","#BCBB49"],["2022-11-02","#BDBB48"],["2022-11-03","#BDBB48"],["2022-11-04","#BDBB48"],["2022-11-05","#BEBB48"],["2022-11-06","#BEBB48"],["2022-11-08","#BFBB48"],["2022-11-09","#BFBB47"],["2022-11-10","#C0BB47"],["2022-11-12","#C0BA47"],["2022-11-13","#C1BA47"],["2022-11-14","#C1BA47"],["2022-11-15","#C1BA47"],["2022-11-16","#C2BA46"],["2022-11-20","#C3BA46"],["2022-11-22","#C4BA45"],["2022-11-23","#C4B945"],["2022-11-25","#C5B945"],["2022-11-26","#C5B945"],["2022-11-28","#C6B945"],["2022-11-29","#C6B944"],["2022-11-30","#C6B944"],["2022-12-01","#C7B944"],["2022-12-02","#C7B944"],["2022-12-03","#C8B944"],["2022-12-04","#C8B944"],["2022-12-06","#C9B843"],["2022-12-07","#C9B843"],["2022-12-10","#CAB843"],["2022-12-14","#CBB742"],["2022-12-15","#CBB742"],["2022-12-16","#CCB742"],["2022-12-18","#CCB742"],["2022-12-21","#CDB642"],["2022-12-22","#CDB642"],["2022-12-23","#CEB641"],["2022-12-24","#CEB641"],["2022-12-25","#CEB541"],["2022-12-27","#CFB541"],["2022-12-29","#CFB541"],["2022-12-30","#CFB441"],["2022-12-31","#D0B441"],["2023-01-01","#D0B441"],["2023-01-03","#D1B440"],["2023-01-06","#D1B340"],["2023-01-07","#D2B340"],["2023-01-09","#D2B240"],["2023-01-12","#D3B240"],["2023-01-13","#D3B23F"],["2023-01-14","#D3B13F"],["2023-01-15","#D4B13F"],["2023-01-21","#D5B03F"],["2023-01-23","#D6B03F"],["2023-01-24","#D6AF3E"],["2023-01-25","#D6AF3E"],["2023-01-26","#D7AF3E"],["2023-01-27","#D7AF3E"],["2023-01-28","#D7AF3E"],["2023-01-29","#D7AE3E"],["2023-01-30","#D8AE3E"],["2023-01-31","#D8AE3E"],["2023-02-02","#D9AE3E"],["2023-02-03","#D9AE3E"],["2023-02-08","#DAAD3D"],["2023-02-09","#DAAC3D"],["2023-02-10","#DBAC3D"],["2023-02-11","#DBAC3D"],["2023-02-12","#DBAC3D"],["2023-02-14","#DCAB3C"],["2023-02-19","#DDAA3C"],["2023-02-21","#DDA93C"],["2023-02-23","#DDA93C"],["2023-02-24","#DDA83C"],["2023-02-26","#DEA83C"],["2023-02-28","#DEA73B"],["2023-03-02","#DEA63B"],["2023-03-03","#DEA63B"],["2023-03-05","#DFA53B"],["2023-03-07","#DFA43B"],["2023-03-09","#DFA43B"],["2023-03-10","#DFA33B"],["2023-03-11","#E0A33B"],["2023-03-16","#E0A13A"],["2023-03-18","#E1A13A"],["2023-03-19","#E1A03A"],["2023-03-20","#E1A03A"],["2023-03-21","#E1A03A"],["2023-03-22","#E19F3A"],["2023-03-23","#E19F3A"],["2023-03-24","#E19F39"],["2023-03-27","#E29E39"],["2023-03-28","#E29D39"],["2023-03-29","#E29D39"],["2023-03-30","#E29D39"],["2023-03-31","#E39C39"],["2023-04-03","#E39B39"],["2023-04-04","#E39B39"],["2023-04-05","#E39B39"],["2023-04-07","#E49A38"],["2023-04-08","#E49A38"],["2023-04-11","#E49838"],["2023-04-12","#E49838"],["2023-04-13","#E49838"],["2023-04-14","#E59738"],["2023-04-17","#E59638"],["2023-04-18","#E59638"],["2023-04-19","#E59637"],["2023-04-20","#E59537"],["2023-04-21","#E69537"],["2023-04-22","#E69537"],["2023-04-23","#E69437"],["2023-04-24","#E69437"],["2023-04-25","#E69337"],["2023-04-26","#E69337"],["2023-04-28","#E69237"],["2023-05-01","#E69036"],["2023-05-03","#E68F36"],["2023-05-04","#E68F36"],["2023-05-05","#E68E36"],["2023-05-06","#E68E36"],["2023-05-07","#E68D36"],["2023-05-08","#E68D36"],["2023-05-11","#E68B35"],["2023-05-22","#E68634"],["2023-05-23","#E68534"],["2023-05-24","#E68534"],["2023-05-25","#E68434"],["2023-05-26","#E68434"],["2023-05-29","#E68234"],["2023-05-30","#E68234"],["2023-05-31","#E68134"],["2023-06-01","#E68133"],["2023-06-02","#E68033"],["2023-06-06","#E67E33"],["2023-06-07","#E67E33"],["2023-06-08","#E67D33"],["2023-06-09","#E67D33"],["2023-06-10","#E67C33"],["2023-06-11","#E67C32"],["2023-06-12","#E67B32"],["2023-06-13","#E67B32"],["2023-06-14","#E67A32"],["2023-06-20","#E67732"],["2023-06-26","#E67431"],["2023-06-28","#E67331"],["2023-06-29","#E67331"],["2023-06-30","#E67231"],["2023-07-09","#E56C30"],["2023-07-10","#E56C2F"],["2023-07-11","#E56B2F"],["2023-07-13","#E56A2F"],["2023-07-14","#E5692F"],["2023-07-17","#E4672F"],["2023-07-19","#E4662E"],["2023-07-23","#E4642E"],["2023-07-24","#E4632E"],["2023-07-25","#E4622E"],["2023-07-26","#E3622D"],["2023-07-27","#E3612D"],["2023-07-28","#E3602D"],["2023-08-02","#E35D2D"],["2023-08-04","#E35C2C"],["2023-08-06","#E25B2C"],["2023-08-07","#E25A2C"],["2023-08-10","#E2582C"],["2023-08-17","#E1542B"],["2023-08-22","#E1512A"],["2023-08-23","#E1502A"],["2023-08-24","#E1502A"],["2023-08-25","#E14F2A"],["2023-08-30","#E04C29"],["2023-08-31","#E04B29"],["2023-09-01","#E04B29"],["2023-09-04","#E04929"],["2023-09-05","#E04828"],["2023-09-06","#DF4728"],["2023-09-07","#DF4728"],["2023-09-10","#DF4528"],["2023-09-11","#DF4428"],["2023-09-17","#DF4127"],["2023-09-21","#DE3E27"],["2023-09-22","#DE3D27"],["2023-09-24","#DE3C26"],["2023-09-26","#DE3B26"],["2023-09-27","#DE3A26"],["2023-09-29","#DE3926"],["2023-10-04","#DD3625"],["2023-10-12","#DD3124"],["2023-10-13","#DD3024"],["2023-10-15","#DC2F24"],["2023-10-16","#DC2E24"],["2023-10-17","#DC2E24"],["2023-10-18","#DC2D24"],["2023-11-02","#403BC5"],["2023-11-12","#4886C7"],["2023-11-14","#4C92BF"],["2023-11-17","#569FAF"],["2023-11-21","#65AD98"],["2023-11-24","#72B485"],["2023-11-27","#81B973"],["2023-11-28","#86BB6E"],["2023-11-29","#8BBB69"],["2023-11-30","#91BC64"],["2023-12-01","#97BD5F"],["2023-12-02","#9CBE5B"],["2023-12-03","#A2BE57"],["2023-12-17","#E29E39"],["2023-12-20","#E68C36"],["2023-12-21","#E68434"]]},{"key":"designation_recency","title":"Designation recency","type":"categorical"},{"key":"Nextclade_pango","title":"Nextclade Pango Lineage","type":"categorical"},{"key":"partiallyAliased","title":"Unaliased Pango Lineage","type":"categorical"},{"key":"immune_escape","title":"RBD immune escape score","type":"continuous"},{"key":"ace2_binding","title":"ACE2 affinity score","type":"continuous"},{"key":"qc.overallScore","title":"Overall QC score","type":"continuous"},{"key":"frameShifts","title":"All frame shifts","type":"categorical"},{"key":"qc.frameShifts.frameShifts","title":"Unusual frame shifts","type":"categorical"},{"key":"qc.frameShifts.totalFrameShifts","title":"Total unusual frame shifts","type":"categorical"},{"key":"qc.stopCodons.totalStopCodons","title":"Total stop codons","type":"categorical"},{"key":"totalAminoacidSubstitutions","title":"Total amino acid substitutions","type":"continuous"},{"key":"totalAminoacidDeletions","title":"Total amino acid deletions","type":"continuous"},{"key":"clade_who","title":"WHO name","type":"categorical","scale":[["Omicron","#DB2823"]]},{"key":"clade_nextstrain","title":"Nextstrain clade name","type":"categorical","scale":[["21L","#B4BD4C"],["22A","#BDBB49"],["22B","#C5B945"],["22C","#CDB642"],["22D","#D4B13F"],["22E","#DBAC3D"],["22F","#DFA43B"],["23A","#E39B39"],["23B","#E69137"],["23C","#E68434"],["23D","#E67732"],["23E","#E4682F"],["23F","#E2582C"],["23G","#E04828"],["23H","#DE3826"],["23I","#DB2823"]]},{"key":"clade_display","title":"Display clade name","type":"categorical"},{"key":"placement_prior","title":"Placement Prior (log10)","type":"continuous"}],"filters":["new_node","clade_membership","Nextclade_pango","partiallyAliased","designation_recency","clade_who","clade_display","designation_date"],"panels":["tree","entropy"],"extensions":{"nextclade":{"clade_node_attrs":[{"name":"Nextclade_pango","displayName":"Pango lineage (Nextclade)","description":"Pango lineage as inferred by Nextclade from the nearest neighbour in the reference tree. 98% accurate for recent sequences, for higher accuracy use dedicated pangolin software in UShER or pangoLEARN mode. Recombinants may get (wrongly) assigned to a designated recombinant lineage if they have similar breakpoints.","hideInWeb":false},{"name":"partiallyAliased","displayName":"Unaliased","description":"Partially aliased reconstructed Pango lineage","hideInWeb":false},{"name":"clade_nextstrain","displayName":"Nextstrain Clade","description":"Nextstrain Clade","hideInWeb":true},{"name":"clade_who","displayName":"WHO name","description":"Greek letter WHO name","hideInWeb":true},{"name":"clade_display","displayName":"Clade display name","description":"Combination of Nextstrain clade and Pango lineage","hideInWeb":true}],"placement_mask_ranges":[{"begin":0,"end":50},{"begin":29850,"end":29902}]}}},"tree":{"name":"NODE_0000000","node_attrs":{"div":0,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.0632240791824596}},"branch_attrs":{"mutations":{"nuc":["T11288-","C11289-","T11290-","G11291-","G11292-","T11293-","T11294-","T11295-","T11296-","T21633-","A21634-","C21635-","C21636-","C21637-","C21638-","C21639-","T21640-","G21641-","G28362-","A28363-","G28364-","A28365-","A28366-","C28367-","G28368-","C28369-","A28370-","G29734-","A29735-","G29736-","G29737-","C29738-","C29739-","A29740-","C29741-","G29742-","C29743-","G29744-","G29745-","A29746-","G29747-","T29748-","A29749-","C29750-","G29751-","A29752-","T29753-","C29754-","G29755-","A29756-","G29757-","T29758-","G29759-"],"N":["E31-","R32-","S33-"],"ORF1a":["S3675-","G3676-","F3677-"],"ORF9b":["E27-","N28-","A29-"],"S":["L24-","P25-","P26-","A27S"]},"labels":{"aa":"N: E31-, R32-, S33-; ORF1a: S3675-, G3676-, F3677-; ORF9b: E27-, N28-, A29-; S: L24-, P25-, P26-, A27S","clade":"Omicron","spike_mutations":"L24-, P25-, P26-, A27S"}},"children":[{"name":"BA.2","node_attrs":{"div":0,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2021-12-07"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0632240791824596}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000001","node_attrs":{"div":0,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.0632240791824596}},"branch_attrs":{"mutations":{}},"children":[{"name":"BA.2.15","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-14"},"Nextclade_pango":{"value":"BA.2.15"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.557195671263833}},"branch_attrs":{"mutations":{"nuc":["C44T","C9714T","G21753T","C27944T"],"ORF1a":["T3150I"],"S":["W64L"]},"labels":{"aa":"ORF1a: T3150I; S: W64L","spike_mutations":"W64L"}}},{"name":"BA.2.16","node_attrs":{"div":1,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-14"},"Nextclade_pango":{"value":"BA.2.16"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.182153387678624}},"branch_attrs":{"mutations":{"nuc":["G515-","T516-","T517-","A518-","T519-","G520-","C29160T"],"N":["T296I"],"ORF1a":["V84-","M85-"]},"labels":{"aa":"N: T296I; ORF1a: V84-, M85-"}}},{"name":"BA.2.19","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.19"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5106503051736055}},"branch_attrs":{"mutations":{"nuc":["C1263T","C16092T"],"ORF1a":["T333M"]},"labels":{"aa":"ORF1a: T333M"}}},{"name":"internal_a01b","node_attrs":{"div":19,"clade_membership":{"value":"outgroup"},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"placement_prior":{"value":-4.68196629184344}},"branch_attrs":{"mutations":{"nuc":["T2790C","T9344C","G9424A","T10198C","T17410C","T19955C","G20055A","T21618C","-21633T","-21634A","-21635C","-21636C","-21637C","-21638C","-21639C","-21640T","-21641G","C21762T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","C21846T","A21987-","T21988-","G21989-","T21990-","T21991-","T21992-","A21993-","T21994-","T21995-","A22194-","T22195-","T22196-","G22200T","G22688A","C22786A","G22898A","T25000C","T25584C","C27382G","T27383A","C27384T","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A"],"ORF1a":["I842T","F3027L"],"ORF1b":["C1315R","I2163T"],"ORF6":["L61D"],"S":["I19T","-24L","-25P","-26P","S27A","A67V","H69-","V70-","T95I","D142-","V143-","Y144-","Y145D","N211-","L212I","G213V","A376T","S408R","G446S"]},"labels":{"aa":"ORF1a: I842T, F3027L; ORF1b: C1315R, I2163T; ORF6: L61D; S: I19T, -24L, -25P, -26P, S27A, A67V, H69-, V70-, T95I, D142-, V143-, Y144-, Y145D, N211-, L212I, G213V, A376T, S408R, G446S","clade":"outgroup","spike_mutations":"I19T, -24L, -25P, -26P, S27A, A67V, H69-, V70-, T95I, D142-, V143-, Y144-, Y145D, N211-, L212I, G213V, A376T, S408R, G446S"}},"children":[{"name":"BA.3","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":15},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"outgroup"},"designation_date":{"value":"2021-12-14"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":44},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3827182274278815}},"branch_attrs":{"mutations":{"nuc":["C832T","C11235T","C29311T"],"ORF1a":["A3657V"]},"labels":{"aa":"ORF1a: A3657V"}}},{"name":"21M","node_attrs":{"div":30,"clade_membership":{"value":"outgroup"},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"placement_prior":{"value":-3.788348897359943}},"branch_attrs":{"mutations":{"nuc":["G670T","A4184G","T4321C","T9534C","A10447G","T12880C","T15714C","A22775G","T26060C","T26858C","C29510A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"N":["R413S"],"ORF1a":["R135S","S1307G","I3090T","-3677F"],"ORF3a":["I223T"],"S":["N405D"]},"labels":{"aa":"N: R413S; ORF1a: R135S, S1307G, I3090T, -3677F; ORF3a: I223T; S: N405D","spike_mutations":"N405D"}},"children":[{"name":"BA.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":16},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"outgroup"},"designation_date":{"value":"2021-12-07"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":46},"qc.overallScore":{"value":0},"placement_prior":{"value":-0.794219457378473}},"branch_attrs":{"mutations":{"nuc":["A2832G","T5386G","G6513-","T6514-","T6515-","G8393A","T11285-","T11286-","G11287-","-11294T","-11295T","-11296T","A11537G","T13195C","C15240T","T22673C","G23048A","C23202A","C24130A","C24503T","C25000T","C25584T","A26530G"],"M":["D3G"],"ORF1a":["K856R","S2083-","L2084I","A2710T","L3674-","I3758V"],"S":["F371L","G496S","T547K","N856K","L981F"]},"labels":{"aa":"M: D3G; ORF1a: K856R, S2083-, L2084I, A2710T, L3674-, I3758V; S: F371L, G496S, T547K, N856K, L981F","spike_mutations":"F371L, G496S, T547K, N856K, L981F"}}},{"name":"20B","node_attrs":{"div":61,"clade_membership":{"value":"outgroup"},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"placement_prior":{"value":-2.9221832046121174}},"branch_attrs":{"mutations":{"nuc":["T10029C","A10449C","G18163A","T21762C","T21846C","-21987G","-21988T","-21989G","-21990T","-21991T","-21995T","-22194A","-22195T","-22196T","A22578G","T22674C","C22679T","T22686C","T22813G","G22882T","A22898G","A22992G","A22995C","C23013A","G23040A","G23055A","C23075T","T23525C","G23599T","A23854C","T23948G","T24424A","A24469T","T26270C","G26577C","A26709G","C27259A","T27807C","T28271-","T28311C","-28362G","-28363A","-28364G","-28365A","-28366A","-28367C","-28368G","-28369C","-28370A"],"E":["I9T"],"M":["E19Q","T63A"],"N":["L13P","-31E","-32R","-33S"],"ORF1a":["I3255T","H3395P"],"ORF1b":["V1566I"],"ORF9b":["S10P","-27E","-28N","-29A"],"S":["V67A","I95T","-142G","-143V","D145Y","-211N","I212L","D339G","F371S","P373S","F375S","N417K","K440N","S446G","N477S","K478T","A484E","R493Q","R498Q","H505Y","Y655H","K679N","K764N","Y796D","H954Q","K969N"]},"labels":{"aa":"E: I9T; M: E19Q, T63A; N: L13P, -31E, -32R, -33S; ORF1a: I3255T, H3395P; ORF1b: V1566I; ORF9b: S10P, -27E, -28N, -29A; S: V67A, I95T, -142G, -143V, D145Y, -211N, I212L, D339G, F371S, P373S, F375S, N417K, K440N, S446G, N477S, K478T, A484E, R493Q, R498Q, H505Y, Y655H, K679N, K764N, Y796D, H954Q, K969N","spike_mutations":"V67A, I95T, -142G, -143V, D145Y, -211N, I212L, D339G, F371S, P373S, F375S, N417K, K440N, S446G, N477S, K478T, A484E, R493Q, R498Q, H505Y, Y655H, K679N, K764N, Y796D, H954Q, K969N"}},"children":[{"name":"B.1.1.7","node_attrs":{"div":80,"totalAminoacidDeletions":{"value":6},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":18},"qc.overallScore":{"value":0},"placement_prior":{"value":-1.1263876474998966}},"branch_attrs":{"mutations":{"nuc":["C913T","C3267T","C5388A","C5986T","T6954C","C14676T","C15279T","T16176C","C23271A","C23709T","T24506G","G24914C","C27972T","G28048T","A28111G","G28280C","A28281T","T28282A","C28977T"],"N":["D3L","S235F"],"ORF1a":["T1001I","A1708D","I2230T","F3677-"],"ORF8":["Q27*","R52I","Y73C"],"S":["A570D","T716I","S982A","D1118H"]},"labels":{"aa":"N: D3L, S235F; ORF1a: T1001I, A1708D, I2230T, F3677-; ORF8: Q27*, R52I, Y73C; S: A570D, T716I, S982A, D1118H","spike_mutations":"A570D, T716I, S982A, D1118H"}}},{"name":"NODE_0000005","node_attrs":{"div":63,"clade_membership":{"value":"outgroup"},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"placement_prior":{"value":-1.8428141116763987}},"branch_attrs":{"mutations":{"nuc":["-11288T","-11289C","-11290T","-11291G","-11292G","-11293T","-11294T","-11295T","-11296T","-21765T","-21766A","-21767C","-21768A","-21769T","-21770G","-21992T","-21993A","-21994T","T23063A","A23604C","-28271A"],"ORF1a":["-3675S","-3676G"],"S":["-69H","-70V","-144Y","Y501N","H681P"]},"labels":{"aa":"ORF1a: -3675S, -3676G; S: -69H, -70V, -144Y, Y501N, H681P","spike_mutations":"-69H, -70V, -144Y, Y501N, H681P"}},"children":[{"name":"B.1.1","node_attrs":{"div":63,"totalAminoacidDeletions":{"value":0},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":4},"qc.overallScore":{"value":0},"placement_prior":{"value":-1.8428141116763987}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000006","node_attrs":{"div":66,"clade_membership":{"value":"outgroup"},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"placement_prior":{"value":-1.4973013446782213}},"branch_attrs":{"mutations":{"nuc":["A28881G","A28882G","C28883G"],"N":["K203R","R204G"]},"labels":{"aa":"N: K203R, R204G"}},"children":[{"name":"B.1","node_attrs":{"div":66,"totalAminoacidDeletions":{"value":0},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":2},"qc.overallScore":{"value":0},"placement_prior":{"value":-1.4973013446782213}},"branch_attrs":{"mutations":{}}},{"name":"B.1.617.2","node_attrs":{"div":83,"totalAminoacidDeletions":{"value":2},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"outgroup"},"designation_date":{"value":"2021-04-21"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":19},"qc.overallScore":{"value":0},"placement_prior":{"value":-0.5470276011786672}},"branch_attrs":{"mutations":{"nuc":["G210T","G15451A","C16466T","C21618G","G21987A","A22029-","G22030-","T22031-","T22032-","C22033-","A22034-","T22917G","C22995A","C23604G","G24410A","C25469T","T26767C","T27638C","C27752T","A28461G","G28881T","G29402T","G29742T"],"M":["I82T"],"N":["D63G","R203M","D377Y"],"ORF1b":["G662S","P1000L"],"ORF3a":["S26L"],"ORF7a":["V82A","T120I"],"ORF9b":["T60A"],"S":["T19R","G142D","E156-","F157-","R158G","L452R","T478K","P681R","D950N"]},"labels":{"aa":"M: I82T; N: D63G, R203M, D377Y; ORF1b: G662S, P1000L; ORF3a: S26L; ORF7a: V82A, T120I; ORF9b: T60A; S: T19R, G142D, E156-, F157-, R158G, L452R, T478K, P681R, D950N","spike_mutations":"T19R, G142D, E156-, F157-, R158G, L452R, T478K, P681R, D950N"}}},{"name":"19A","node_attrs":{"div":70,"clade_membership":{"value":"outgroup"},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"placement_prior":{"value":-3.0620923723531392}},"branch_attrs":{"mutations":{"nuc":["T241C","T3037C","T14408C","G23403A"],"ORF1b":["L314P"],"S":["G614D"]},"labels":{"aa":"ORF1b: L314P; S: G614D","spike_mutations":"G614D"}},"children":[{"name":"A","node_attrs":{"div":73,"totalAminoacidDeletions":{"value":0},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":1},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.904372434956953}},"branch_attrs":{"mutations":{"nuc":["A1T","C8782T","T28144C"],"ORF8":["L84S"]},"labels":{"aa":"ORF8: L84S"}}},{"name":"B","node_attrs":{"div":70,"totalAminoacidDeletions":{"value":0},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"outgroup"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"outgroup"},"clade_display":{"value":"outgroup"},"clade_nextstrain":{"value":"outgroup"},"totalAminoacidSubstitutions":{"value":0},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0620923723531392}},"branch_attrs":{"mutations":{}}}]}]}]}]}]}]},{"name":"NODE_0000008","node_attrs":{"div":50,"partiallyAliased":{"value":"BA.2.86"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"BA.2.86"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-4.915106978059732}},"branch_attrs":{"mutations":{"nuc":["C21T","C897A","G3431T","A7842G","C8293T","G8393A","G11042T","C12789T","T13339C","T15756A","A18492G","C21622T","G21624C","C21711T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G21941T","T21992-","A21993-","T21994-","T22032C","C22033A","A22034G","A22194-","T22195-","T22196-","C22208T","C22295A","C22353A","A22556G","G22577C","A22629C","G22770A","G22895C","T22896A","G22898A","A22910G","C22916T","T22917G","T22942A","T23005A","G23009-","T23010-","T23011-","G23012A","C23013A","T23018C","T23019C","G23040A","G23222A","C23271T","C23423T","A23604G","C24378T","C24990T","C25207T","G26529C","A26610G","C26681T","C26833T","C28958A"],"M":["D3H","T30A","A104V"],"N":["Q229K"],"ORF1a":["A211D","V1056L","N2526S","A2710T","V3593F","T4175I"],"S":["R21T","S50L","H69-","V70-","V127F","Y144-","F157S","R158G","N211-","L212I","L216F","H245N","A264D","I332V","D339H","K356T","R403K","V445H","G446S","N450D","L452W","N460K","N481K","V483-","A484K","F486P","R493Q","E554K","A570V","P621S","H681R","S939F","P1143L"]},"labels":{"aa":"M: D3H, T30A, A104V; N: Q229K; ORF1a: A211D, V1056L, N2526S, A2710T, V3593F, T4175I; S: R21T, S50L, H69-, V70-, V127F, Y144-, F157S, R158G, N211-, L212I, L216F, H245N, A264D, I332V, D339H, K356T, R403K, V445H, G446S, N450D, L452W, N460K, N481K, V483-, A484K, F486P, R493Q, E554K, A570V, P621S, H681R, S939F, P1143L","clade":"23I","spike_mutations":"R21T, S50L, H69-, V70-, V127F, Y144-, F157S, R158G, N211-, L212I, L216F, H245N, A264D, I332V, D339H, K356T, R403K, V445H, G446S, N450D, L452W, N460K, N481K, V483-, A484K, F486P, R493Q, E554K, A570V, P621S, H681R, S939F, P1143L"}},"children":[{"name":"BA.2.86","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-08-17"},"Nextclade_pango":{"value":"BA.2.86"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":82},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.915106978059732}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.86.2","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"BA.2.86.2"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":83},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.621151369359683}},"branch_attrs":{"mutations":{"nuc":["G27459T"],"ORF7a":["E22D"]},"labels":{"aa":"ORF7a: E22D"}}},{"name":"BA.2.86.4","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"BA.2.86.4"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["T11940C","C22227T"],"ORF1a":["V3892A"],"S":["A222V"]},"labels":{"aa":"ORF1a: V3892A; S: A222V","spike_mutations":"A222V"}}},{"name":"BA.2.86.5","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"BA.2.86.5"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":83},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363701945002102}},"branch_attrs":{"mutations":{"nuc":["C44T","C5575T","T6085C","A22151G","T23278C"],"S":["I197V"]},"labels":{"aa":"S: I197V","spike_mutations":"I197V"}}},{"name":"NODE_0000009","node_attrs":{"div":54,"partiallyAliased":{"value":"BA.2.86.3"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"BA.2.86.3"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-5.219795369317822}},"branch_attrs":{"mutations":{"nuc":["C44T","C222T","C1960T","T12775C"]}},"children":[{"name":"BA.2.86.3","node_attrs":{"div":54,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"BA.2.86.3"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":82},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.219795369317822}},"branch_attrs":{"mutations":{}}},{"name":"JQ.1","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"JQ.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":83},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8663773041941525}},"branch_attrs":{"mutations":{"nuc":["C21846T"],"S":["T95I"]},"labels":{"aa":"S: T95I","spike_mutations":"T95I"}}}]},{"name":"NODE_0000010","node_attrs":{"div":52,"partiallyAliased":{"value":"BA.2.86.1"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"BA.2.86.1"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-5.374276033792643}},"branch_attrs":{"mutations":{"nuc":["C44T","A6183G"],"ORF1a":["K1973R"]},"labels":{"aa":"ORF1a: K1973R"}},"children":[{"name":"JN.4","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.3791236231759376"},"partiallyAliased":{"value":"BA.2.86.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"0.32843999999999995"},"designation_date":{"value":"2023-11-12"},"Nextclade_pango":{"value":"JN.4"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.585396058874648}},"branch_attrs":{"mutations":{"nuc":["C22986T"],"S":["A475V"]},"labels":{"aa":"S: A475V","spike_mutations":"A475V"}}},{"name":"internal_27df1dc1","node_attrs":{"div":53,"partiallyAliased":{"value":"BA.2.86.1"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"BA.2.86.1"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-3.825522127946127}},"branch_attrs":{"mutations":{"nuc":["C12815T"]}},"children":[{"name":"BA.2.86.1","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-09-05"},"Nextclade_pango":{"value":"BA.2.86.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":83},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.825522127946127}},"branch_attrs":{"mutations":{}}},{"name":"JN.6","node_attrs":{"div":54,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-14"},"Nextclade_pango":{"value":"JN.6"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.546897196889168}},"branch_attrs":{"mutations":{"nuc":["G22139T"],"S":["V193L"]},"labels":{"aa":"S: V193L","spike_mutations":"V193L"}}},{"name":"JN.7","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"JN.7"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363701945002102}},"branch_attrs":{"mutations":{"nuc":["A4576T","T4579A","G23342A"],"S":["G594S"]},"labels":{"aa":"S: G594S","spike_mutations":"G594S"}}},{"name":"JN.8","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"JN.8"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.758471906884632}},"branch_attrs":{"mutations":{"nuc":["C22458T","G28904T"],"N":["A211S"],"S":["T299I"]},"labels":{"aa":"N: A211S; S: T299I","spike_mutations":"T299I"}}},{"name":"JN.9","node_attrs":{"div":54,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"JN.9"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.813989234734464}},"branch_attrs":{"mutations":{"nuc":["G25249A"],"S":["M1229I"]},"labels":{"aa":"S: M1229I","spike_mutations":"M1229I"}}},{"name":"NODE_0000012","node_attrs":{"div":55,"partiallyAliased":{"value":"BA.2.86.1.3"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"JN.3"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-4.408131993423136}},"branch_attrs":{"mutations":{"nuc":["T44C","C6525T"],"ORF1a":["T2087I"]},"labels":{"aa":"ORF1a: T2087I"}},"children":[{"name":"JN.3","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"JN.3"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.408131993423136}},"branch_attrs":{"mutations":{}}},{"name":"JN.3.1","node_attrs":{"div":57,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"JN.3.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":86},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["G24328C","C27476T"],"ORF7a":["T28I"],"S":["L922F"]},"labels":{"aa":"ORF7a: T28I; S: L922F","spike_mutations":"L922F"}}}]},{"name":"NODE_0000013","node_attrs":{"div":54,"partiallyAliased":{"value":"BA.2.86.1.5"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"JN.5"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-4.997946619701466}},"branch_attrs":{"mutations":{"nuc":["C28677T"],"N":["T135I"]},"labels":{"aa":"N: T135I"}},"children":[{"name":"JN.5","node_attrs":{"div":54,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-14"},"Nextclade_pango":{"value":"JN.5"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.997946619701466}},"branch_attrs":{"mutations":{}}},{"name":"JN.5.1","node_attrs":{"div":62,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.3791236231759376"},"partiallyAliased":{"value":"BA.2.86.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"0.6465599999999999"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"JN.5.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["T2950A","G4720A","C5806T","G16416T","G22985T","C26058T","A28052G","C29541T"],"S":["A475S"]},"labels":{"aa":"S: A475S","spike_mutations":"A475S"}}}]},{"name":"internal_59b29264","node_attrs":{"div":54,"partiallyAliased":{"value":"BA.2.86.1.2"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"JN.2"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-4.091639210924216}},"branch_attrs":{"mutations":{"nuc":["A2127G"],"ORF1a":["Y621C"]},"labels":{"aa":"ORF1a: Y621C"}},"children":[{"name":"JN.2","node_attrs":{"div":54,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"JN.2"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.091639210924216}},"branch_attrs":{"mutations":{}}},{"name":"JN.2.1","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"JN.2.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.080077700677932}},"branch_attrs":{"mutations":{"nuc":["C21654T"],"S":["S31F"]},"labels":{"aa":"S: S31F","spike_mutations":"S31F"}}},{"name":"JN.2.2","node_attrs":{"div":58,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.2.2"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["T1030C","C11195T","C23277T","G28346T"],"N":["G25C"],"ORF1a":["L3644F"],"S":["T572I"]},"labels":{"aa":"N: G25C; ORF1a: L3644F; S: T572I","spike_mutations":"T572I"}}},{"name":"JN.2.3","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.2.3"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.217573909323864}},"branch_attrs":{"mutations":{"nuc":["G22139T"],"S":["V193L"]},"labels":{"aa":"S: V193L","spike_mutations":"V193L"}}},{"name":"JN.2.4","node_attrs":{"div":57,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.198591474293673"},"partiallyAliased":{"value":"BA.2.86.1.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.04777"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.2.4"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":1.5625},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["T44C","G12310A","C22286T"],"S":["L242F"]},"labels":{"aa":"S: L242F","spike_mutations":"L242F"}}},{"name":"JN.2.5","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.2.5"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":0.694444},"placement_prior":{"value":-5.121255175483932}},"branch_attrs":{"mutations":{"nuc":["T44C","T22926C"],"S":["L455S"]},"labels":{"aa":"S: L455S","spike_mutations":"L455S"}}}]},{"name":"NODE_0000015","node_attrs":{"div":54,"partiallyAliased":{"value":"BA.2.86.1"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"BA.2.86.1"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-4.730439658181147}},"branch_attrs":{"mutations":{"nuc":["T3565C"]}},"children":[{"name":"JN.10","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.3791236231759376"},"partiallyAliased":{"value":"BA.2.86.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"0.32843999999999995"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"JN.10"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847207044008983}},"branch_attrs":{"mutations":{"nuc":["C22986T"],"S":["A475V"]},"labels":{"aa":"S: A475V","spike_mutations":"A475V"}}},{"name":"internal_be7480af","node_attrs":{"div":58,"partiallyAliased":{"value":"BA.2.86.1.1"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"JN.1"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-3.2720015590364606}},"branch_attrs":{"mutations":{"nuc":["G11727A","C18894T","T22926C","T27810C"],"ORF1a":["R3821K"],"ORF7b":["F19L"],"S":["L455S"]},"labels":{"aa":"ORF1a: R3821K; ORF7b: F19L; S: L455S","spike_mutations":"L455S"}},"children":[{"name":"JN.1","node_attrs":{"div":58,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2023-09-29"},"Nextclade_pango":{"value":"JN.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":86},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2720015590364606}},"branch_attrs":{"mutations":{}}},{"name":"JN.1.10","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-11"},"Nextclade_pango":{"value":"JN.1.10"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.778032205972682}},"branch_attrs":{"mutations":{"nuc":["C21846T"],"S":["T95I"]},"labels":{"aa":"S: T95I","spike_mutations":"T95I"}}},{"name":"JN.1.11","node_attrs":{"div":60,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-11"},"Nextclade_pango":{"value":"JN.1.11"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["G17334T","G24872T"],"S":["V1104L"]},"labels":{"aa":"S: V1104L","spike_mutations":"V1104L"}}},{"name":"JN.1.2","node_attrs":{"div":60,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"JN.1.2"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":88},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.469161723516447}},"branch_attrs":{"mutations":{"nuc":["C20930T","G25249T"],"ORF1b":["T2488M"],"S":["M1229I"]},"labels":{"aa":"ORF1b: T2488M; S: M1229I","spike_mutations":"M1229I"}}},{"name":"JN.1.3","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2023-12-20"},"Nextclade_pango":{"value":"JN.1.3"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.105485059252014}},"branch_attrs":{"mutations":{"nuc":["C27945T"],"ORF8":["Q18*"]},"labels":{"aa":"ORF8: Q18*"}}},{"name":"JN.1.4","node_attrs":{"div":60,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-08"},"Nextclade_pango":{"value":"JN.1.4"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3676171111038387}},"branch_attrs":{"mutations":{"nuc":["A1T","C774T"],"ORF1a":["T170I"]},"labels":{"aa":"ORF1a: T170I"}}},{"name":"JN.1.5","node_attrs":{"div":61,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.5"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.38925604947449}},"branch_attrs":{"mutations":{"nuc":["C5986T","G17278A","T17279C"],"ORF1b":["V1271T"]},"labels":{"aa":"ORF1b: V1271T"}}},{"name":"JN.1.7","node_attrs":{"div":61,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.7"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":88},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["C23277T","G25012T","C25566T"],"S":["T572I","E1150D"]},"labels":{"aa":"S: T572I, E1150D","spike_mutations":"T572I, E1150D"}}},{"name":"JN.1.9","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.9"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.58789177735301}},"branch_attrs":{"mutations":{"nuc":["G22111T"],"S":["Q183H"]},"labels":{"aa":"S: Q183H","spike_mutations":"Q183H"}}},{"name":"internal_be5f0a35","node_attrs":{"div":59,"partiallyAliased":{"value":"BA.2.86.1.1.6"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"JN.1.6"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-4.894807293152413}},"branch_attrs":{"mutations":{"nuc":["G22627A"]}},"children":[{"name":"JN.1.6","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.6"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":86},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.894807293152413}},"branch_attrs":{"mutations":{}}},{"name":"JN.1.6.1","node_attrs":{"div":61,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.491506865326231"},"partiallyAliased":{"value":"BA.2.86.1.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.14224"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.6.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":1.5625},"placement_prior":{"value":-5.129403368529456}},"branch_attrs":{"mutations":{"nuc":["T44C","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}}]},{"name":"internal_1d294b78","node_attrs":{"div":59,"partiallyAliased":{"value":"BA.2.86.1.1.8"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"JN.1.8"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-4.832324415723095}},"branch_attrs":{"mutations":{"nuc":["C27476T"],"ORF7a":["T28I"]},"labels":{"aa":"ORF7a: T28I"}},"children":[{"name":"JN.1.8","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.8"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.832324415723095}},"branch_attrs":{"mutations":{}}},{"name":"JN.1.8.1","node_attrs":{"div":61,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.8.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":88},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.075793626660025}},"branch_attrs":{"mutations":{"nuc":["A12928G","C23277T"],"S":["T572I"]},"labels":{"aa":"S: T572I","spike_mutations":"T572I"}}}]},{"name":"internal_31dddbfd","node_attrs":{"div":60,"partiallyAliased":{"value":"BA.2.86.1.1.1"},"clade_membership":{"value":"23I"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23I (BA.2.86)"},"Nextclade_pango":{"value":"JN.1.1"},"clade_nextstrain":{"value":"23I"},"placement_prior":{"value":-3.689954188241629}},"branch_attrs":{"mutations":{"nuc":["C1762A","C11747T"],"ORF1a":["F499L"]},"labels":{"aa":"ORF1a: F499L"}},"children":[{"name":"JN.1.1","node_attrs":{"div":60,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"JN.1.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":87},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.689954188241629}},"branch_attrs":{"mutations":{}}},{"name":"JN.1.1.1","node_attrs":{"div":62,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"JN.1.1.1"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":88},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.097425438728813}},"branch_attrs":{"mutations":{"nuc":["C9142T","C23277T"],"S":["T572I"]},"labels":{"aa":"S: T572I","spike_mutations":"T572I"}}},{"name":"JN.1.1.2","node_attrs":{"div":62,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"BA.2.86.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.1.2"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":88},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.030702743263078}},"branch_attrs":{"mutations":{"nuc":["T3488C","G22104A"],"S":["G181E"]},"labels":{"aa":"S: G181E","spike_mutations":"G181E"}}},{"name":"JN.1.1.3","node_attrs":{"div":63,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.491506865326231"},"partiallyAliased":{"value":"BA.2.86.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23I"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23I (BA.2.86)"},"ace2_binding":{"value":"1.14224"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"JN.1.1.3"},"clade_nextstrain":{"value":"23I"},"totalAminoacidSubstitutions":{"value":89},"qc.overallScore":{"value":1.5625},"placement_prior":{"value":-5.418749511333008}},"branch_attrs":{"mutations":{"nuc":["T44C","C20629T","G22599C"],"ORF1b":["H2388Y"],"S":["R346T"]},"labels":{"aa":"ORF1b: H2388Y; S: R346T","spike_mutations":"R346T"}}}]}]}]}]}]}]},{"name":"NODE_0000020","node_attrs":{"div":1,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-1.4669261502614392}},"branch_attrs":{"mutations":{"nuc":["C9866T"],"ORF1a":["L3201F"]},"labels":{"aa":"ORF1a: L3201F"}},"children":[{"name":"BA.2.1","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-02-25"},"Nextclade_pango":{"value":"BA.2.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.971541196286666}},"branch_attrs":{"mutations":{"nuc":["C12789T"],"ORF1a":["T4175I"]},"labels":{"aa":"ORF1a: T4175I"}}},{"name":"BA.2.11","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.04096000000000006"},"designation_date":{"value":"2022-04-06"},"Nextclade_pango":{"value":"BA.2.11"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9667974568472393}},"branch_attrs":{"mutations":{"nuc":["T7820C","T22917G","G29868A"],"ORF1a":["S2519P"],"S":["L452R"]},"labels":{"aa":"ORF1a: S2519P; S: L452R","spike_mutations":"L452R"}}},{"name":"BA.2.18","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.047315972860990416"},"partiallyAliased":{"value":"BA.2.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.23107"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.18"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0529659854979725}},"branch_attrs":{"mutations":{"nuc":["A22812C","C23248T"],"S":["N417T"]},"labels":{"aa":"S: N417T","spike_mutations":"N417T"}}},{"name":"BA.2.20","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.20"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.994418342880062}},"branch_attrs":{"mutations":{"nuc":["A22005C","C28498T","G29315C"],"N":["D348H"],"ORF9b":["T72I"],"S":["N148T"]},"labels":{"aa":"N: D348H; ORF9b: T72I; S: N148T","spike_mutations":"N148T"}}},{"name":"BA.2.24","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.013108466806745694"},"partiallyAliased":{"value":"BA.2.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.03172000000000008"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.24"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0452414190976027}},"branch_attrs":{"mutations":{"nuc":["G22577A"],"S":["D339N"]},"labels":{"aa":"S: D339N","spike_mutations":"D339N"}}},{"name":"BA.2.26","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.26"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6005015534523643}},"branch_attrs":{"mutations":{"nuc":["C2003T","C8739T"],"ORF1a":["L580F","T2825I"]},"labels":{"aa":"ORF1a: L580F, T2825I"}}},{"name":"BA.2.27","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.27"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.048893882308856}},"branch_attrs":{"mutations":{"nuc":["T2C","G3514A"],"ORF1a":["M1083I"]},"labels":{"aa":"ORF1a: M1083I"}}},{"name":"BA.2.28","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.28"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.820077216817957}},"branch_attrs":{"mutations":{"nuc":["A6610C","C9360T","A25457G"],"ORF1a":["R2115S","T3032I"],"ORF3a":["D22G"]},"labels":{"aa":"ORF1a: R2115S, T3032I; ORF3a: D22G"}}},{"name":"BA.2.29","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.29"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.21946028504228}},"branch_attrs":{"mutations":{"nuc":["G2012A"],"ORF1a":["A583T"]},"labels":{"aa":"ORF1a: A583T"}}},{"name":"BA.2.30","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.30"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.238209666436553}},"branch_attrs":{"mutations":{"nuc":["C3602T","G26109T"],"ORF1a":["H1113Y"],"ORF3a":["E239D"]},"labels":{"aa":"ORF1a: H1113Y; ORF3a: E239D"}}},{"name":"BA.2.32","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.32"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.703945768889153}},"branch_attrs":{"mutations":{"nuc":["C22624T","G27589T"],"ORF7a":["A66S"]},"labels":{"aa":"ORF7a: A66S"}}},{"name":"BA.2.39","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.39"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-08"},"Nextclade_pango":{"value":"BA.2.39"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.278674776194367}},"branch_attrs":{"mutations":{"nuc":["C9502T","T9892C","G15672T","G20176T","A20347G","C24134A"],"ORF1b":["E735D","V2237F","S2294G"],"S":["L858I"]},"labels":{"aa":"ORF1b: E735D, V2237F, S2294G; S: L858I","spike_mutations":"L858I"}}},{"name":"BA.2.4","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"BA.2.4"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7149873049004487}},"branch_attrs":{"mutations":{"nuc":["C21T","T27374A"],"ORF6":["M58K"]},"labels":{"aa":"ORF6: M58K"}}},{"name":"BA.2.41","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.41"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-11"},"Nextclade_pango":{"value":"BA.2.41"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.692722147716802}},"branch_attrs":{"mutations":{"nuc":["C4202T","A25253T"],"S":["T1231S"]},"labels":{"aa":"S: T1231S","spike_mutations":"T1231S"}}},{"name":"BA.2.42","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.42"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-18"},"Nextclade_pango":{"value":"BA.2.42"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9944195260257374}},"branch_attrs":{"mutations":{"nuc":["C1348T","T8164C","T21765C","A29407T"],"N":["E378D"],"S":["I68T"]},"labels":{"aa":"N: E378D; S: I68T","spike_mutations":"I68T"}}},{"name":"BA.2.43","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.017546004766815407"},"partiallyAliased":{"value":"BA.2.43"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.11284999999999996"},"designation_date":{"value":"2022-05-19"},"Nextclade_pango":{"value":"BA.2.43"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.439658188793908}},"branch_attrs":{"mutations":{"nuc":["A2568G","T22674A","G25166C"],"ORF1a":["Q768R"],"S":["F371Y","E1202Q"]},"labels":{"aa":"ORF1a: Q768R; S: F371Y, E1202Q","spike_mutations":"F371Y, E1202Q"}}},{"name":"BA.2.46","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.46"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-30"},"Nextclade_pango":{"value":"BA.2.46"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.043306758788595}},"branch_attrs":{"mutations":{"nuc":["C36T","C44T","C17883T","G25019T","C26296A","A28654G"],"E":["L18I"],"S":["D1153Y"]},"labels":{"aa":"E: L18I; S: D1153Y","spike_mutations":"D1153Y"}}},{"name":"BA.2.48","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.48"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-01"},"Nextclade_pango":{"value":"BA.2.48"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.782260489759099}},"branch_attrs":{"mutations":{"nuc":["C4230T","T4579A","A15972G","C16779T","A22305C"],"ORF1a":["T1322I"],"S":["Y248S"]},"labels":{"aa":"ORF1a: T1322I; S: Y248S","spike_mutations":"Y248S"}}},{"name":"BA.2.5","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"BA.2.5"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5619677640461207}},"branch_attrs":{"mutations":{"nuc":["C3317T"],"ORF1a":["P1018S"]},"labels":{"aa":"ORF1a: P1018S"}}},{"name":"BA.2.50","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.50"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-04"},"Nextclade_pango":{"value":"BA.2.50"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.22827190487724}},"branch_attrs":{"mutations":{"nuc":["C2749T","C13620T","T22197C"],"S":["L212S"]},"labels":{"aa":"S: L212S","spike_mutations":"L212S"}}},{"name":"BA.2.54","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.54"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-06"},"Nextclade_pango":{"value":"BA.2.54"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.169578448341116}},"branch_attrs":{"mutations":{"nuc":["C3874T","C19017T","A22305C","G25166C"],"S":["Y248S","E1202Q"]},"labels":{"aa":"S: Y248S, E1202Q","spike_mutations":"Y248S, E1202Q"}}},{"name":"BA.2.55","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.55"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-06"},"Nextclade_pango":{"value":"BA.2.55"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.149535177513094}},"branch_attrs":{"mutations":{"nuc":["T21765C","A24383T"],"S":["I68T","T941S"]},"labels":{"aa":"S: I68T, T941S","spike_mutations":"I68T, T941S"}}},{"name":"BA.2.58","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.58"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-09"},"Nextclade_pango":{"value":"BA.2.58"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.950490216186885}},"branch_attrs":{"mutations":{"nuc":["G25352C"],"S":["V1264L"]},"labels":{"aa":"S: V1264L","spike_mutations":"V1264L"}}},{"name":"BA.2.59","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.59"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-09"},"Nextclade_pango":{"value":"BA.2.59"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.600029515200223}},"branch_attrs":{"mutations":{"nuc":["G25019T","C25791T","A28338G"],"N":["D22G"],"ORF9b":["I19V"],"S":["D1153Y"]},"labels":{"aa":"N: D22G; ORF9b: I19V; S: D1153Y","spike_mutations":"D1153Y"}}},{"name":"BA.2.60","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.60"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.60"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.732865264840192}},"branch_attrs":{"mutations":{"nuc":["A1916T","C4754T","C9967T","C14625T","G24947A","C25046T"],"ORF1a":["T551S","P1497S"],"S":["V1129I","P1162S"]},"labels":{"aa":"ORF1a: T551S, P1497S; S: V1129I, P1162S","spike_mutations":"V1129I, P1162S"}}},{"name":"BA.2.61","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.61"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.61"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.571449532324071}},"branch_attrs":{"mutations":{"nuc":["C4276T","T21752A","A25168G"],"S":["W64R"]},"labels":{"aa":"S: W64R","spike_mutations":"W64R"}}},{"name":"BA.2.62","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.62"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.62"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9704761849141494}},"branch_attrs":{"mutations":{"nuc":["C25669T"],"ORF3a":["H93Y"]},"labels":{"aa":"ORF3a: H93Y"}}},{"name":"BA.2.63","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.63"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.63"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.196350255891805}},"branch_attrs":{"mutations":{"nuc":["C3096T","G18674A"],"ORF1a":["S944L"],"ORF1b":["R1736K"]},"labels":{"aa":"ORF1a: S944L; ORF1b: R1736K"}}},{"name":"BA.2.64","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.64"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.64"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.347482354768696}},"branch_attrs":{"mutations":{"nuc":["C3961T","G11266T","T28678C"],"ORF1a":["L3667F"]},"labels":{"aa":"ORF1a: L3667F"}}},{"name":"BA.2.65","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.65"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.65"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.857133697388927}},"branch_attrs":{"mutations":{"nuc":["C27945T"],"ORF8":["Q18*"]},"labels":{"aa":"ORF8: Q18*"}}},{"name":"BA.2.70","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.70"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.70"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.457714545666549}},"branch_attrs":{"mutations":{"nuc":["A866G","G5230T","G8828A","C9286T"],"ORF1a":["I201V","K1655N","A2855T"]},"labels":{"aa":"ORF1a: I201V, K1655N, A2855T"}}},{"name":"BA.2.77","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.38002376941814814"},"partiallyAliased":{"value":"BA.2.77"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.9213199999999999"},"designation_date":{"value":"2022-07-03"},"Nextclade_pango":{"value":"BA.2.77"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.50572897681887}},"branch_attrs":{"mutations":{"nuc":["C44T","C10332T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G22580A","A22629C","T22917G","G23040A","G24368C","G25691T","C26305T","C26533T"],"E":["L21F"],"M":["S4F"],"ORF1a":["T3356I"],"ORF3a":["G100V"],"S":["H69-","V70-","E340K","K356T","L452R","R493Q","D936H"]},"labels":{"aa":"E: L21F; M: S4F; ORF1a: T3356I; ORF3a: G100V; S: H69-, V70-, E340K, K356T, L452R, R493Q, D936H","spike_mutations":"H69-, V70-, E340K, K356T, L452R, R493Q, D936H"}}},{"name":"BA.2.8","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-28"},"Nextclade_pango":{"value":"BA.2.8"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3251399879881713}},"branch_attrs":{"mutations":{"nuc":["T21048C","G25483A"],"ORF3a":["A31T"]},"labels":{"aa":"ORF3a: A31T"}}},{"name":"BA.2.82","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.21548712660915123"},"partiallyAliased":{"value":"BA.2.82"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.11142000000000006"},"designation_date":{"value":"2022-08-12"},"Nextclade_pango":{"value":"BA.2.82"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.861461980066343}},"branch_attrs":{"mutations":{"nuc":["A7201G","G12278A","C13197T","T21765C","G22599C"],"ORF1a":["A4005T","T4311I"],"S":["I68T","R346T"]},"labels":{"aa":"ORF1a: A4005T, T4311I; S: I68T, R346T","spike_mutations":"I68T, R346T"}}},{"name":"BA.2.83","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.17930286905761658"},"partiallyAliased":{"value":"BA.2.83"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.12534"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BA.2.83"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907769989352378}},"branch_attrs":{"mutations":{"nuc":["C6701T","A6785G","C10340T","C13197T","C19983T","T21180C","C21587A","T21752C","G22203T","G22317A","G22898A","T22942G","A22995C","G23040A","G24834A","G25352T","G26416C","A28467G"],"E":["V58L"],"N":["K65R"],"ORF1a":["L2146F","T2174A","P3359S","T4311I"],"ORF9b":["N62D"],"S":["P9T","W64R","R214L","G252D","G446S","N460K","K478T","R493Q","R1091H","V1264L"]},"labels":{"aa":"E: V58L; N: K65R; ORF1a: L2146F, T2174A, P3359S, T4311I; ORF9b: N62D; S: P9T, W64R, R214L, G252D, G446S, N460K, K478T, R493Q, R1091H, V1264L","spike_mutations":"P9T, W64R, R214L, G252D, G446S, N460K, K478T, R493Q, R1091H, V1264L"}}},{"name":"BA.2.85","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.85"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.2.85"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.463483580898579}},"branch_attrs":{"mutations":{"nuc":["C44T","C225T","A23513G","C28432T","A28877T","G28878C"],"ORF9b":["S50L"],"S":["I651V"]},"labels":{"aa":"ORF9b: S50L; S: I651V","spike_mutations":"I651V"}}},{"name":"NODE_0000021","node_attrs":{"div":5,"partiallyAliased":{"value":"BA.2.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.5414431537850484}},"branch_attrs":{"mutations":{"nuc":["T2C","C4893T","C12525T","T25224C"],"ORF1a":["T1543I","T4087I"],"S":["I1221T"]},"labels":{"aa":"ORF1a: T1543I, T4087I; S: I1221T","spike_mutations":"I1221T"}},"children":[{"name":"BA.2.2","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-02-25"},"Nextclade_pango":{"value":"BA.2.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5414431537850484}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.2.1","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-13"},"Nextclade_pango":{"value":"BA.2.2.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.151889486767697}},"branch_attrs":{"mutations":{"nuc":["G7393T","T10696C","C26789T","A28119G","T28897A"],"ORF8":["I76V"]},"labels":{"aa":"ORF8: I76V"}}}]},{"name":"NODE_0000022","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2.23"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.23"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.110083275601633}},"branch_attrs":{"mutations":{"nuc":["G670T"],"ORF1a":["R135S"]},"labels":{"aa":"ORF1a: R135S"}},"children":[{"name":"BA.2.23","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.23"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.110083275601633}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.23.1","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.23.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-09"},"Nextclade_pango":{"value":"BA.2.23.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.216265367172717}},"branch_attrs":{"mutations":{"nuc":["C7869T","A28389T"],"N":["Q39L"],"ORF1a":["S2535L"],"ORF9b":["N36Y"]},"labels":{"aa":"N: Q39L; ORF1a: S2535L; ORF9b: N36Y"}}}]},{"name":"internal_04a9","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2.31"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.31"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.942809369706408}},"branch_attrs":{"mutations":{"nuc":["G12071A"],"ORF1a":["D3936N"]},"labels":{"aa":"ORF1a: D3936N"}},"children":[{"name":"BA.2.31","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.31"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.942809369706408}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.31.1","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.31.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-09-19"},"Nextclade_pango":{"value":"BA.2.31.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4120207656143355}},"branch_attrs":{"mutations":{"nuc":["T19452C","T21765C"],"S":["I68T"]},"labels":{"aa":"S: I68T","spike_mutations":"I68T"}}}]},{"name":"NODE_0000024","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-2.9074128722508648}},"branch_attrs":{"mutations":{"nuc":["C6196T"]}},"children":[{"name":"BA.2.33","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.33"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.041907024457991}},"branch_attrs":{"mutations":{"nuc":["C3903T","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"ORF1a":["P1213L"]},"labels":{"aa":"ORF1a: P1213L"}}},{"name":"BA.2.35","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.04096000000000006"},"designation_date":{"value":"2022-04-29"},"Nextclade_pango":{"value":"BA.2.35"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.341826856503915}},"branch_attrs":{"mutations":{"nuc":["T22917G","C27128T","G28936T"],"N":["L221F"],"S":["L452R"]},"labels":{"aa":"N: L221F; S: L452R","spike_mutations":"L452R"}}}]},{"name":"internal_ad79","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2.40"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.40"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.860784770435802}},"branch_attrs":{"mutations":{"nuc":["G19677T"],"ORF1b":["Q2070H"]},"labels":{"aa":"ORF1b: Q2070H"}},"children":[{"name":"BA.2.40","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.40"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-10"},"Nextclade_pango":{"value":"BA.2.40"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.860784770435802}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.40.1","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.047315972860990416"},"partiallyAliased":{"value":"BA.2.40.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.23107"},"designation_date":{"value":"2022-05-10"},"Nextclade_pango":{"value":"BA.2.40.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7933473516563834}},"branch_attrs":{"mutations":{"nuc":["C21306T","A22812C"],"S":["N417T"]},"labels":{"aa":"S: N417T","spike_mutations":"N417T"}}}]},{"name":"NODE_0000026","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2.56"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.56"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-2.974987838306748}},"branch_attrs":{"mutations":{"nuc":["C22916A"],"S":["L452M"]},"labels":{"aa":"S: L452M","spike_mutations":"L452M"}},"children":[{"name":"BA.2.56","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.56"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-06-08"},"Nextclade_pango":{"value":"BA.2.56"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.974987838306748}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.56.1","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.56.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-06-13"},"Nextclade_pango":{"value":"BA.2.56.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.031906669281877}},"branch_attrs":{"mutations":{"nuc":["C21767T","G24219T"],"S":["H69Y","W886L"]},"labels":{"aa":"S: H69Y, W886L","spike_mutations":"H69Y, W886L"}}}]},{"name":"BA.2.10_internal","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2.10"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.10"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-2.6336834766478723}},"branch_attrs":{"mutations":{"nuc":["T16342C"],"ORF1b":["S959P"]},"labels":{"aa":"ORF1b: S959P"}},"children":[{"name":"BA.2.10","node_attrs":{"div":2,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-01"},"Nextclade_pango":{"value":"BA.2.10"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.6336834766478723}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.10.2","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.10.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-10"},"Nextclade_pango":{"value":"BA.2.10.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7025898267082127}},"branch_attrs":{"mutations":{"nuc":["G26426T","T29867-","G29868-"],"E":["R61L"]},"labels":{"aa":"E: R61L"}}},{"name":"BA.2.10.3","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.10.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-14"},"Nextclade_pango":{"value":"BA.2.10.3"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.079850431253761}},"branch_attrs":{"mutations":{"nuc":["T21765C"],"S":["I68T"]},"labels":{"aa":"S: I68T","spike_mutations":"I68T"}}},{"name":"BA.2.10.4","node_attrs":{"div":13,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.3624635743501971"},"partiallyAliased":{"value":"BA.2.10.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.73328"},"designation_date":{"value":"2022-08-09"},"Nextclade_pango":{"value":"BA.2.10.4"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.204372185270571}},"branch_attrs":{"mutations":{"nuc":["G4255A","G15451A","T21752C","A21987G","G22898A","T23018C","T23019C","G23040A","T23042C","C24990T","C27707T"],"ORF1b":["G662S"],"ORF7a":["A105V"],"S":["W64R","D142G","G446S","F486P","R493Q","S494P","P1143L"]},"labels":{"aa":"ORF1b: G662S; ORF7a: A105V; S: W64R, D142G, G446S, F486P, R493Q, S494P, P1143L","spike_mutations":"W64R, D142G, G446S, F486P, R493Q, S494P, P1143L"}}},{"name":"internal_ffa6","node_attrs":{"div":4,"partiallyAliased":{"value":"BA.2.10.1"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.10.1"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.45388673639043}},"branch_attrs":{"mutations":{"nuc":["A1C","G23955A"],"S":["G798D"]},"labels":{"aa":"S: G798D","spike_mutations":"G798D"}},"children":[{"name":"BA.2.10.1","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-04"},"Nextclade_pango":{"value":"BA.2.10.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.45388673639043}},"branch_attrs":{"mutations":{}}},{"name":"BJ.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.5714270218143368"},"partiallyAliased":{"value":"BA.2.10.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.09519000000000005"},"designation_date":{"value":"2022-08-10"},"Nextclade_pango":{"value":"BJ.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828355517381171}},"branch_attrs":{"mutations":{"nuc":["A405G","G15451A","C15738T","T15939C","T17859C","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T23010C","T23030G","G24570T","G26529T","T27722C","G28079T","C29118T"],"M":["D3Y"],"N":["T282I"],"ORF1a":["K47R"],"ORF1b":["G662S"],"ORF7a":["I110T"],"S":["V83A","Y144-","H146Q","Q183E","G213E","D339H","R346T","L368I","V445P","G446S","V483A","F490V","S1003I"]},"labels":{"aa":"M: D3Y; N: T282I; ORF1a: K47R; ORF1b: G662S; ORF7a: I110T; S: V83A, Y144-, H146Q, Q183E, G213E, D339H, R346T, L368I, V445P, G446S, V483A, F490V, S1003I","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, D339H, R346T, L368I, V445P, G446S, V483A, F490V, S1003I"}}}]}]},{"name":"NODE_0000029","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-1.618472400578839}},"branch_attrs":{"mutations":{"nuc":["C22792T"]}},"children":[{"name":"BA.2.14","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-14"},"Nextclade_pango":{"value":"BA.2.14"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6323590106289014}},"branch_attrs":{"mutations":{"nuc":["G21753T","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"S":["W64L"]},"labels":{"aa":"S: W64L","spike_mutations":"W64L"}}},{"name":"BA.2.22","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.22"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2628324518098526}},"branch_attrs":{"mutations":{"nuc":["G12163T","C17676T","T22119C"],"ORF1a":["Q3966H"],"S":["F186S"]},"labels":{"aa":"ORF1a: Q3966H; S: F186S","spike_mutations":"F186S"}}},{"name":"BA.2.34","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.34"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.982642540681139}},"branch_attrs":{"mutations":{"nuc":["G29000A"],"N":["G243S"]},"labels":{"aa":"N: G243S"}}},{"name":"BA.2.36","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-01"},"Nextclade_pango":{"value":"BA.2.36"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.074763791577626}},"branch_attrs":{"mutations":{"nuc":["T21765C"],"S":["I68T"]},"labels":{"aa":"S: I68T","spike_mutations":"I68T"}}},{"name":"BA.2.45","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.06752446585871223"},"partiallyAliased":{"value":"BA.2.45"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.30755999999999994"},"designation_date":{"value":"2022-05-23"},"Nextclade_pango":{"value":"BA.2.45"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.58927408535901}},"branch_attrs":{"mutations":{"nuc":["T2G","C9430T","T22907C"],"S":["Y449H"]},"labels":{"aa":"S: Y449H","spike_mutations":"Y449H"}}},{"name":"BA.2.47","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.47"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-31"},"Nextclade_pango":{"value":"BA.2.47"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.063097522345096}},"branch_attrs":{"mutations":{"nuc":["G1018T","T22304C","C25344A"],"ORF1a":["L251F"],"S":["Y248H","S1261Y"]},"labels":{"aa":"ORF1a: L251F; S: Y248H, S1261Y","spike_mutations":"Y248H, S1261Y"}}},{"name":"BA.2.49","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.49"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-03"},"Nextclade_pango":{"value":"BA.2.49"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9084546881831654}},"branch_attrs":{"mutations":{"nuc":["C13620T","A29403T"],"N":["D377V"]},"labels":{"aa":"N: D377V"}}},{"name":"BA.2.51","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.51"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-04"},"Nextclade_pango":{"value":"BA.2.51"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7176624272571823}},"branch_attrs":{"mutations":{"nuc":["C23802T"],"S":["T747I"]},"labels":{"aa":"S: T747I","spike_mutations":"T747I"}}},{"name":"BA.2.52","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.52"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-05"},"Nextclade_pango":{"value":"BA.2.52"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8739621266477156}},"branch_attrs":{"mutations":{"nuc":["T2228C"],"ORF1a":["C655R"]},"labels":{"aa":"ORF1a: C655R"}}},{"name":"BA.2.53","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.06752446585871223"},"partiallyAliased":{"value":"BA.2.53"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.33552999999999994"},"designation_date":{"value":"2022-06-05"},"Nextclade_pango":{"value":"BA.2.53"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.427033969962426}},"branch_attrs":{"mutations":{"nuc":["C8605T","C10681T","C17766T","T22907A","T25306C","C28677T"],"N":["T135I"],"S":["Y449N"]},"labels":{"aa":"N: T135I; S: Y449N","spike_mutations":"Y449N"}}},{"name":"BA.2.6","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"BA.2.6"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6646086978653187}},"branch_attrs":{"mutations":{"nuc":["G25471C"],"ORF3a":["D27H"]},"labels":{"aa":"ORF3a: D27H"}}},{"name":"BA.2.69","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.69"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.69"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9391565350974496}},"branch_attrs":{"mutations":{"nuc":["A14827C"],"ORF1b":["M454L"]},"labels":{"aa":"ORF1b: M454L"}}},{"name":"BA.2.7","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"BA.2.7"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3665007599171144}},"branch_attrs":{"mutations":{"nuc":["C6636T"],"ORF1a":["T2124I"]},"labels":{"aa":"ORF1a: T2124I"}}},{"name":"BA.2.71","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.71"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-12"},"Nextclade_pango":{"value":"BA.2.71"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.695218589025385}},"branch_attrs":{"mutations":{"nuc":["T21752C"],"S":["W64R"]},"labels":{"aa":"S: W64R","spike_mutations":"W64R"}}},{"name":"BA.2.72","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.72"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-12"},"Nextclade_pango":{"value":"BA.2.72"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5866259374633165}},"branch_attrs":{"mutations":{"nuc":["T22197C","C24865T"],"S":["L212S"]},"labels":{"aa":"S: L212S","spike_mutations":"L212S"}}},{"name":"BA.2.80","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.3799299475718675"},"partiallyAliased":{"value":"BA.2.80"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10838000000000005"},"designation_date":{"value":"2022-07-08"},"Nextclade_pango":{"value":"BA.2.80"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.4744085012923}},"branch_attrs":{"mutations":{"nuc":["A2783C","C4475T","A9343G","G22599C","A22629C","C26873T","C27923T","-29759T"],"ORF1a":["N840H","R1404C"],"S":["R346T","K356T"]},"labels":{"aa":"ORF1a: N840H, R1404C; S: R346T, K356T","spike_mutations":"R346T, K356T"}}},{"name":"BA.2.81","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.81"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-07-09"},"Nextclade_pango":{"value":"BA.2.81"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.262632866969011}},"branch_attrs":{"mutations":{"nuc":["G6337T","T14171C","C17502T","C22916A"],"ORF1b":["I235T"],"S":["L452M"]},"labels":{"aa":"ORF1b: I235T; S: L452M","spike_mutations":"L452M"}}},{"name":"internal_6dd8","node_attrs":{"div":3,"partiallyAliased":{"value":"BA.2.25"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.25"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.447784428470612}},"branch_attrs":{"mutations":{"nuc":["A1652G"],"ORF1a":["I463V"]},"labels":{"aa":"ORF1a: I463V"}},"children":[{"name":"BA.2.25","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.25"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.447784428470612}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.25.1","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.25.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.25.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.139745518479766}},"branch_attrs":{"mutations":{"nuc":["C22624T","G25681A"],"ORF3a":["V97I"]},"labels":{"aa":"ORF3a: V97I"}}}]},{"name":"internal_8e5d","node_attrs":{"div":3,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-2.7421420463442314}},"branch_attrs":{"mutations":{"nuc":["A23767G"]}},"children":[{"name":"BA.2.44","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.017546004766815407"},"partiallyAliased":{"value":"BA.2.44"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.11284999999999996"},"designation_date":{"value":"2022-05-21"},"Nextclade_pango":{"value":"BA.2.44"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.145054794916775}},"branch_attrs":{"mutations":{"nuc":["C19011T","T22674A"],"S":["F371Y"]},"labels":{"aa":"S: F371Y","spike_mutations":"F371Y"}}},{"name":"internal_6b14","node_attrs":{"div":4,"partiallyAliased":{"value":"BA.2.13"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.13"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.5087194160978976}},"branch_attrs":{"mutations":{"nuc":["C22916A"],"S":["L452M"]},"labels":{"aa":"S: L452M","spike_mutations":"L452M"}},"children":[{"name":"BA.2.13","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-04-08"},"Nextclade_pango":{"value":"BA.2.13"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5087194160978976}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.13.1","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-07-12"},"Nextclade_pango":{"value":"BA.2.13.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0763061479705}},"branch_attrs":{"mutations":{"nuc":["C16954T","A24383T","C28507T"],"ORF9b":["A75V"],"S":["T941S"]},"labels":{"aa":"ORF9b: A75V; S: T941S","spike_mutations":"T941S"}}}]}]},{"name":"NODE_0000033","node_attrs":{"div":3,"partiallyAliased":{"value":"BA.2.9"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.9"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-2.182354456880523}},"branch_attrs":{"mutations":{"nuc":["C25624T"],"ORF3a":["H78Y"]},"labels":{"aa":"ORF3a: H78Y"}},"children":[{"name":"BA.2.9","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-01"},"Nextclade_pango":{"value":"BA.2.9"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.182354456880523}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.9.1","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.9.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-04-08"},"Nextclade_pango":{"value":"BA.2.9.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.133251529752692}},"branch_attrs":{"mutations":{"nuc":["A1230G","T3610C","T4111C","C15342T","C20178T","C22916A","A24433G","C28472T","G29508T"],"N":["P67S","S412I"],"ORF1a":["K322R"],"S":["L452M"]},"labels":{"aa":"N: P67S, S412I; ORF1a: K322R; S: L452M","spike_mutations":"L452M"}}},{"name":"BA.2.9.2","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.9.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.9.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5835867849032237}},"branch_attrs":{"mutations":{"nuc":["C6285T"],"ORF1a":["T2007I"]},"labels":{"aa":"ORF1a: T2007I"}}},{"name":"BA.2.9.3","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.9.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-31"},"Nextclade_pango":{"value":"BA.2.9.3"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3510092037553676}},"branch_attrs":{"mutations":{"nuc":["T21752C"],"S":["W64R"]},"labels":{"aa":"S: W64R","spike_mutations":"W64R"}}},{"name":"BA.2.9.4","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.21548712660915123"},"partiallyAliased":{"value":"BA.2.9.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.11142000000000006"},"designation_date":{"value":"2022-06-02"},"Nextclade_pango":{"value":"BA.2.9.4"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.264630575685513}},"branch_attrs":{"mutations":{"nuc":["C18267T","C21911T","G22599C","C27406T"],"ORF7a":["L5F"],"S":["R346T"]},"labels":{"aa":"ORF7a: L5F; S: R346T","spike_mutations":"R346T"}}},{"name":"BA.2.9.5","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.9.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-07-09"},"Nextclade_pango":{"value":"BA.2.9.5"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2198349264091863}},"branch_attrs":{"mutations":{"nuc":["T4443C"],"ORF1a":["V1393A"]},"labels":{"aa":"ORF1a: V1393A"}}},{"name":"BA.2.9.6","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.9.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-08-08"},"Nextclade_pango":{"value":"BA.2.9.6"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.457281243806297}},"branch_attrs":{"mutations":{"nuc":["G2144T","C5183T","C22916A"],"ORF1a":["V627F","P1640S"],"S":["L452M"]},"labels":{"aa":"ORF1a: V627F, P1640S; S: L452M","spike_mutations":"L452M"}}},{"name":"BA.2.9.7","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.9.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-11-01"},"Nextclade_pango":{"value":"BA.2.9.7"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7832361784630475}},"branch_attrs":{"mutations":{"nuc":["C1426T","C2197T","C3602T","A17645G","C23751T","T27383C","C28435T"],"ORF1a":["H1113Y"],"ORF1b":["Q1393R"],"ORF6":["L61P"],"ORF9b":["P51L"],"S":["S730F"]},"labels":{"aa":"ORF1a: H1113Y; ORF1b: Q1393R; ORF6: L61P; ORF9b: P51L; S: S730F","spike_mutations":"S730F"}}}]}]},{"name":"NODE_0000034","node_attrs":{"div":3,"partiallyAliased":{"value":"BA.2.3"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.3"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-2.4801928067736045}},"branch_attrs":{"mutations":{"nuc":["C8991T","C25810T"],"ORF1a":["A2909V"],"ORF3a":["L140F"]},"labels":{"aa":"ORF1a: A2909V; ORF3a: L140F"}},"children":[{"name":"BA.2.3","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-02-25"},"Nextclade_pango":{"value":"BA.2.3"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.4801928067736045}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.3.1","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-01"},"Nextclade_pango":{"value":"BA.2.3.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.123601079602359}},"branch_attrs":{"mutations":{"nuc":["C23591G"],"S":["Q677E"]},"labels":{"aa":"S: Q677E","spike_mutations":"Q677E"}}},{"name":"BA.2.3.10","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.10"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.195713144499724}},"branch_attrs":{"mutations":{"nuc":["G25776T"],"ORF3a":["W128C"]},"labels":{"aa":"ORF3a: W128C"}}},{"name":"BA.2.3.11","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.11"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7397657494365957}},"branch_attrs":{"mutations":{"nuc":["C13326T"],"ORF1a":["T4354I"]},"labels":{"aa":"ORF1a: T4354I"}}},{"name":"BA.2.3.12","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.12"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.926590201197067}},"branch_attrs":{"mutations":{"nuc":["T2C","C12525T","C18508T"],"ORF1a":["T4087I"],"ORF1b":["L1681F"]},"labels":{"aa":"ORF1a: T4087I; ORF1b: L1681F"}}},{"name":"BA.2.3.13","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.13"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.353242417357077}},"branch_attrs":{"mutations":{"nuc":["C10277T","C19317T"],"ORF1a":["L3338F"]},"labels":{"aa":"ORF1a: L3338F"}}},{"name":"BA.2.3.14","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.14"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.853403670231518}},"branch_attrs":{"mutations":{"nuc":["T2845C","A9930C"],"ORF1a":["D3222A"]},"labels":{"aa":"ORF1a: D3222A"}}},{"name":"BA.2.3.15","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.15"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.965273871818792}},"branch_attrs":{"mutations":{"nuc":["C18060T","G18315A","T22207G"],"S":["D215E"]},"labels":{"aa":"S: D215E","spike_mutations":"D215E"}}},{"name":"BA.2.3.17","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-14"},"Nextclade_pango":{"value":"BA.2.3.17"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.81409227243765}},"branch_attrs":{"mutations":{"nuc":["G2659T","C13730T"],"ORF1a":["K798N"],"ORF1b":["A88V"]},"labels":{"aa":"ORF1a: K798N; ORF1b: A88V"}}},{"name":"BA.2.3.18","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-14"},"Nextclade_pango":{"value":"BA.2.3.18"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.321047684450031}},"branch_attrs":{"mutations":{"nuc":["C16699T","T17771G","T29867A"],"ORF1b":["R1078C","I1435S"]},"labels":{"aa":"ORF1b: R1078C, I1435S"}}},{"name":"BA.2.3.19","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":6},"immune_escape":{"value":"0.047315972860990416"},"partiallyAliased":{"value":"BA.2.3.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.23107"},"designation_date":{"value":"2022-07-15"},"Nextclade_pango":{"value":"BA.2.3.19"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.683695793453532}},"branch_attrs":{"mutations":{"nuc":["C44T","T6980G","C21859T","A22812C","T24115C","-28362G","-28363A","-28364G","-28365A","-28366A","-28367C","-28368G","-28369C","-28370A"],"N":["-31E","-32R","-33S"],"ORF1a":["C2239G"],"ORF9b":["-27E","-28N","-29A"],"S":["N417T"]},"labels":{"aa":"N: -31E, -32R, -33S; ORF1a: C2239G; ORF9b: -27E, -28N, -29A; S: N417T","spike_mutations":"N417T"}}},{"name":"BA.2.3.4","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-20"},"Nextclade_pango":{"value":"BA.2.3.4"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.176304253225902}},"branch_attrs":{"mutations":{"nuc":["C7600T","C13423T","A23484G"],"S":["N641S"]},"labels":{"aa":"S: N641S","spike_mutations":"N641S"}}},{"name":"BA.2.3.5","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-30"},"Nextclade_pango":{"value":"BA.2.3.5"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.375581224550842}},"branch_attrs":{"mutations":{"nuc":["C936T"],"ORF1a":["T224I"]},"labels":{"aa":"ORF1a: T224I"}}},{"name":"BA.2.3.7","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-04"},"Nextclade_pango":{"value":"BA.2.3.7"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8691927317550827}},"branch_attrs":{"mutations":{"nuc":["C2156T","A21851G","G29239A"],"N":["M322I"],"ORF1a":["L631F"],"S":["K97E"]},"labels":{"aa":"N: M322I; ORF1a: L631F; S: K97E","spike_mutations":"K97E"}}},{"name":"BA.2.3.8","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.8"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.79380187805228}},"branch_attrs":{"mutations":{"nuc":["T2C","C44T","C4980T","A5368C","C10165T","C17649T"],"ORF1a":["T1572I","R1701S"]},"labels":{"aa":"ORF1a: T1572I, R1701S"}}},{"name":"BA.2.3.9","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.3.9"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8576921515750833}},"branch_attrs":{"mutations":{"nuc":["G28986T"],"N":["G238V"]},"labels":{"aa":"N: G238V"}}},{"name":"internal_305a","node_attrs":{"div":4,"partiallyAliased":{"value":"BA.2.3.16"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.3.16"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.858007390899622}},"branch_attrs":{"mutations":{"nuc":["C28087T"],"ORF8":["A65V"]},"labels":{"aa":"ORF8: A65V"}},"children":[{"name":"BA.2.3.16","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-14"},"Nextclade_pango":{"value":"BA.2.3.16"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.858007390899622}},"branch_attrs":{"mutations":{}}},{"name":"BP.1","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.36609407423100015"},"partiallyAliased":{"value":"BA.2.3.16.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.9456899999999999"},"designation_date":{"value":"2022-09-02"},"Nextclade_pango":{"value":"BP.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.7316194773486675}},"branch_attrs":{"mutations":{"nuc":["G6532T","G10193C","C13197T","T15382C","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G22599C","G22770A","C22916A","C23271T","C23846G","C24117T","C26533T","C26681T"],"M":["S4F"],"ORF1a":["E2089D","E3310Q","T4311I"],"S":["H69-","V70-","R346T","R403K","L452M","A570V","Q762E","A852V"]},"labels":{"aa":"M: S4F; ORF1a: E2089D, E3310Q, T4311I; S: H69-, V70-, R346T, R403K, L452M, A570V, Q762E, A852V","spike_mutations":"H69-, V70-, R346T, R403K, L452M, A570V, Q762E, A852V"}}}]},{"name":"internal_6a11","node_attrs":{"div":5,"partiallyAliased":{"value":"BA.2.3.21"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.3.21"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.699332997271257}},"branch_attrs":{"mutations":{"nuc":["C21588T"],"S":["P9L"]},"labels":{"aa":"S: P9L","spike_mutations":"P9L"}},"children":[{"name":"BA.2.3.21","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.019709425154382818"},"partiallyAliased":{"value":"BA.2.3.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06758"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BA.2.3.21"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.841740564310284}},"branch_attrs":{"mutations":{"nuc":["G23040A"],"S":["R493Q"]},"labels":{"aa":"S: R493Q","spike_mutations":"R493Q"}}},{"name":"DD.1","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.34880558472368606"},"partiallyAliased":{"value":"BA.2.3.21.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.9683399999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"DD.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731523430998813}},"branch_attrs":{"mutations":{"nuc":["C9693T","T17901C","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T21992-","A21993-","T21994-","G22200A","G22577A","G22599C","T22907A","T22942G","T23005A","G23040T","G25177T","A28877T","G28878C"],"ORF1a":["A3143V"],"S":["H69-","V70-","Y144-","G213E","D339N","R346T","Y449N","N460K","N481K","R493L","K1205N"]},"labels":{"aa":"ORF1a: A3143V; S: H69-, V70-, Y144-, G213E, D339N, R346T, Y449N, N460K, N481K, R493L, K1205N","spike_mutations":"H69-, V70-, Y144-, G213E, D339N, R346T, Y449N, N460K, N481K, R493L, K1205N"}}}]},{"name":"NODE_0000037","node_attrs":{"div":4,"partiallyAliased":{"value":"BA.2.3"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.3"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.308269854918959}},"branch_attrs":{"mutations":{"nuc":["C22326T"],"S":["S255F"]},"labels":{"aa":"S: S255F","spike_mutations":"S255F"}},"children":[{"name":"BA.2.3.22","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.44281944854451355"},"partiallyAliased":{"value":"BA.2.3.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.37526000000000004"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BA.2.3.22"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907448232484907}},"branch_attrs":{"mutations":{"nuc":["C2842T","C4582T","C17822T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G22017T","A22194-","T22195-","T22196-","G22599C","A22812C","T23030G","T23031C","G24386T","A27243G","C27707T"],"ORF1b":["P1452L"],"ORF6":["I14M"],"ORF7a":["A105V"],"S":["H69-","V70-","W152L","N211-","L212I","R346T","N417T","F490A","A942S"]},"labels":{"aa":"ORF1b: P1452L; ORF6: I14M; ORF7a: A105V; S: H69-, V70-, W152L, N211-, L212I, R346T, N417T, F490A, A942S","spike_mutations":"H69-, V70-, W152L, N211-, L212I, R346T, N417T, F490A, A942S"}}},{"name":"BA.2.3.6","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-31"},"Nextclade_pango":{"value":"BA.2.3.6"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.987430884718884}},"branch_attrs":{"mutations":{"nuc":["C4990T"]}}}]},{"name":"internal_019b","node_attrs":{"div":4,"partiallyAliased":{"value":"BA.2.3.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.3.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.9509636840716866}},"branch_attrs":{"mutations":{"nuc":["C26408T"],"E":["S55F"]},"labels":{"aa":"E: S55F"}},"children":[{"name":"BA.2.3.2","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-04"},"Nextclade_pango":{"value":"BA.2.3.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9509636840716866}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000039","node_attrs":{"div":29,"partiallyAliased":{"value":"BA.2.3.2.1"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BS.1"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-5.5245532375010455}},"branch_attrs":{"mutations":{"nuc":["C44T","C151T","G293A","C629T","A2442C","C4763T","A5405G","A5648C","C6573T","C9979T","A10393C","C11750T","C15654T","C16418T","C20946T","T21992-","A21993-","T21994-","G22332T","G22599C","T22917G","T22942G","G22988A","G23040A","C23481T","T26733C","T27266-","T27267-","A27268-","A27269-","A27270-","G27271-","T27272-","T27273-","T27274-","C27275-","C27276-","A27277-","T27278-","T27279-","T27280-","G27281-","G27282-","A27283-","A27284-","T27285-","C27286-","T27287-","T27288-","G27289-","A27290-","T27291-","T27292-","A27293-","C27294-","A27295-","T27296-","C27297-","A27298-","T27299-","A27300-","C27707T","C28677T"],"M":["Y71H"],"N":["T135I"],"ORF1a":["E10K","L122F","E726A","H1500Y","I1714V","K1795Q","S2103F","L3829F"],"ORF1b":["T984I"],"ORF6":["F22-","K23-","V24-","S25-","I26-","W27-","N28-","L29-","D30-","Y31-","I32-","I33-"],"ORF7a":["A105V"],"S":["Y144-","G257V","R346T","L452R","N460K","G476S","R493Q","S640F"]},"labels":{"aa":"M: Y71H; N: T135I; ORF1a: E10K, L122F, E726A, H1500Y, I1714V, K1795Q, S2103F, L3829F; ORF1b: T984I; ORF6: F22-, K23-, V24-, S25-, I26-, W27-, N28-, L29-, D30-, Y31-, I32-, I33-; ORF7a: A105V; S: Y144-, G257V, R346T, L452R, N460K, G476S, R493Q, S640F","spike_mutations":"Y144-, G257V, R346T, L452R, N460K, G476S, R493Q, S640F"}},"children":[{"name":"BS.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":25},"immune_escape":{"value":"0.4679087038063218"},"partiallyAliased":{"value":"BA.2.3.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.66194"},"designation_date":{"value":"2022-09-12"},"Nextclade_pango":{"value":"BS.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":69},"frameShifts":{"value":"ORF6:34-62"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5245532375010455}},"branch_attrs":{"mutations":{}}},{"name":"BS.1.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":25},"immune_escape":{"value":"0.6369528901902152"},"partiallyAliased":{"value":"BA.2.3.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.6589000000000002"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BS.1.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":71},"frameShifts":{"value":"ORF6:34-62"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5821175187800645}},"branch_attrs":{"mutations":{"nuc":["A22629C","C27752T"],"ORF7a":["T120I"],"S":["K356T"]},"labels":{"aa":"ORF7a: T120I; S: K356T","spike_mutations":"K356T"}}},{"name":"BS.1.2","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":25},"immune_escape":{"value":"0.4747569007385626"},"partiallyAliased":{"value":"BA.2.3.2.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.66821"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"BS.1.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":70},"frameShifts":{"value":"ORF6:34-62"},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["T9580C","A13488G","C22851T"],"S":["T430I"]},"labels":{"aa":"S: T430I","spike_mutations":"T430I"}}}]}]},{"name":"NODE_0000040","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.3.20"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.3.20"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.08454588509843}},"branch_attrs":{"mutations":{"nuc":["A1C","C1471T","C2445T","T5406C","A6770G","C6786T","C8208T","C10189T","A12030G","C17678T","C18252T","T22020C","T22054G","C22295A","G22332A","A22893G","A22910G","C22916A","T22942G","G23012A","C23013G","G23040A","C28550A"],"ORF1a":["T727I","I1714T","M2169V","T2174I","T2648I","Q3922R"],"ORF1b":["T1404M"],"ORF9b":["D89E"],"S":["M153T","N164K","H245N","G257D","K444R","N450D","L452M","N460K","A484R","R493Q"]},"labels":{"aa":"ORF1a: T727I, I1714T, M2169V, T2174I, T2648I, Q3922R; ORF1b: T1404M; ORF9b: D89E; S: M153T, N164K, H245N, G257D, K444R, N450D, L452M, N460K, A484R, R493Q","spike_mutations":"M153T, N164K, H245N, G257D, K444R, N450D, L452M, N460K, A484R, R493Q"}},"children":[{"name":"BA.2.3.20","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-09-02"},"Nextclade_pango":{"value":"BA.2.3.20"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.08454588509843}},"branch_attrs":{"mutations":{}}},{"name":"CM.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"CM.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.859817613267482}},"branch_attrs":{"mutations":{"nuc":["A21612G","T22312C"],"S":["N17S"]},"labels":{"aa":"S: N17S","spike_mutations":"N17S"}}},{"name":"CM.10","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6250871638604674"},"partiallyAliased":{"value":"BA.2.3.20.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.8190299999999999"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"CM.10"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.687388241553342}},"branch_attrs":{"mutations":{"nuc":["T22896C","A22995C"],"S":["V445A","K478T"]},"labels":{"aa":"S: V445A, K478T","spike_mutations":"V445A, K478T"}}},{"name":"NODE_0000041","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.3.20.4"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.4"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.724479039553768}},"branch_attrs":{"mutations":{"nuc":["A13904G","C26822T"],"ORF1b":["D146G"]},"labels":{"aa":"ORF1b: D146G"}},"children":[{"name":"CM.4","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"CM.4"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.724479039553768}},"branch_attrs":{"mutations":{}}},{"name":"CM.4.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.5961172447408698"},"partiallyAliased":{"value":"BA.2.3.20.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.91683"},"designation_date":{"value":"2022-12-15"},"Nextclade_pango":{"value":"CM.4.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.79380187805228}},"branch_attrs":{"mutations":{"nuc":["C22522T","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_d8d0","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.3.20.6"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.6"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-5.624741025872989}},"branch_attrs":{"mutations":{"nuc":["G354C"],"ORF1a":["G30A"]},"labels":{"aa":"ORF1a: G30A"}},"children":[{"name":"CM.6","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"CM.6"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.624741025872989}},"branch_attrs":{"mutations":{}}},{"name":"CM.6.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7815072608245188"},"partiallyAliased":{"value":"BA.2.3.20.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.9440299999999998"},"designation_date":{"value":"2022-11-10"},"Nextclade_pango":{"value":"CM.6.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509701249326239}},"branch_attrs":{"mutations":{"nuc":["C44T","A2514G","C6471T","C12733T","C21306T","G22604T","T22672C"],"ORF1a":["E750G","T2069I"],"S":["A348S"]},"labels":{"aa":"ORF1a: E750G, T2069I; S: A348S","spike_mutations":"A348S"}}}]},{"name":"internal_7ac4","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.3.20.5"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.5"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-5.090651627923068}},"branch_attrs":{"mutations":{"nuc":["C44T","C10802T"]}},"children":[{"name":"CM.5","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"CM.5"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.090651627923068}},"branch_attrs":{"mutations":{}}},{"name":"CM.5.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CM.5.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.395787600868349}},"branch_attrs":{"mutations":{"nuc":["A23586G"],"S":["Q675R"]},"labels":{"aa":"S: Q675R","spike_mutations":"Q675R"}}},{"name":"CM.5.2","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6561529593771388"},"partiallyAliased":{"value":"BA.2.3.20.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.29833"},"designation_date":{"value":"2022-12-15"},"Nextclade_pango":{"value":"CM.5.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9159575181792325}},"branch_attrs":{"mutations":{"nuc":["G23016A"],"S":["G485D"]},"labels":{"aa":"S: G485D","spike_mutations":"G485D"}}}]},{"name":"internal_fc49","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.3.20.8"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.8"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-5.3967429265710205}},"branch_attrs":{"mutations":{"nuc":["T5182C","G22898A"],"S":["G446S"]},"labels":{"aa":"S: G446S","spike_mutations":"G446S"}},"children":[{"name":"CM.8","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6371240224607164"},"partiallyAliased":{"value":"BA.2.3.20.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.99403"},"designation_date":{"value":"2022-11-05"},"Nextclade_pango":{"value":"CM.8"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3967429265710205}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000045","node_attrs":{"div":30,"partiallyAliased":{"value":"BA.2.3.20.8.1"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.8.1"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.451121630713147}},"branch_attrs":{"mutations":{"nuc":["G14622A","T23019C"],"S":["F486S"]},"labels":{"aa":"S: F486S","spike_mutations":"F486S"}},"children":[{"name":"CM.8.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8890833193573787"},"partiallyAliased":{"value":"BA.2.3.20.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.17483999999999994"},"designation_date":{"value":"2022-11-10"},"Nextclade_pango":{"value":"CM.8.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.451121630713147}},"branch_attrs":{"mutations":{}}},{"name":"CM.8.1.2","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8890833193573787"},"partiallyAliased":{"value":"BA.2.3.20.8.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.17483999999999994"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"CM.8.1.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.294907633364726}},"branch_attrs":{"mutations":{"nuc":["C19185T","A22002T","C25207T"],"S":["K147I"]},"labels":{"aa":"S: K147I","spike_mutations":"K147I"}}},{"name":"CM.8.1.4","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8890833193573787"},"partiallyAliased":{"value":"BA.2.3.20.8.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.17483999999999994"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"CM.8.1.4"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430541455854619}},"branch_attrs":{"mutations":{"nuc":["A18835G","C29640T"],"ORF1b":["N1790D"]},"labels":{"aa":"ORF1b: N1790D"}}},{"name":"NODE_0000046","node_attrs":{"div":31,"partiallyAliased":{"value":"BA.2.3.20.8.1"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.8.1"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.766819879832351}},"branch_attrs":{"mutations":{"nuc":["T2068C"]}},"children":[{"name":"CM.8.1.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8890833193573787"},"partiallyAliased":{"value":"BA.2.3.20.8.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.17483999999999994"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"CM.8.1.3"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907448232484907}},"branch_attrs":{"mutations":{"nuc":["T4057C","T25376C","C27688T"],"ORF7a":["P99S"],"S":["Y1272H"]},"labels":{"aa":"ORF7a: P99S; S: Y1272H","spike_mutations":"Y1272H"}}},{"name":"CM.8.1.5","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8890833193573787"},"partiallyAliased":{"value":"BA.2.3.20.8.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.17483999999999994"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"CM.8.1.5"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509701249326239}},"branch_attrs":{"mutations":{"nuc":["G7393T","A22010G","T22304C","C28737T"],"N":["A155V"],"S":["K150E","Y248H"]},"labels":{"aa":"N: A155V; S: K150E, Y248H","spike_mutations":"K150E, Y248H"}}},{"name":"NODE_0000047","node_attrs":{"div":35,"partiallyAliased":{"value":"BA.2.3.20.8.1.1"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.8.1.1"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-5.664548050410498}},"branch_attrs":{"mutations":{"nuc":["C16391T","C18348A","T21435C","A22003T"],"ORF1b":["A975V"],"S":["K147N"]},"labels":{"aa":"ORF1b: A975V; S: K147N","spike_mutations":"K147N"}},"children":[{"name":"CM.8.1.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8890833193573787"},"partiallyAliased":{"value":"BA.2.3.20.8.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.17483999999999994"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"CM.8.1.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.664548050410498}},"branch_attrs":{"mutations":{}}},{"name":"FV.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0949454308593887"},"partiallyAliased":{"value":"BA.2.3.20.8.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.28625999999999996"},"designation_date":{"value":"2023-04-26"},"Nextclade_pango":{"value":"FV.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.606723900182219}},"branch_attrs":{"mutations":{"nuc":["G22599C","G26553C"],"M":["E11Q"],"S":["R346T"]},"labels":{"aa":"M: E11Q; S: R346T","spike_mutations":"R346T"}}}]}]}]}]},{"name":"internal_5873","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.3.20"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.3.20"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.9112994026738073}},"branch_attrs":{"mutations":{"nuc":["T25171C"]}},"children":[{"name":"CM.11","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.032207827124434"},"partiallyAliased":{"value":"BA.2.3.20.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.35566999999999993"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"CM.11"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.371809750211971}},"branch_attrs":{"mutations":{"nuc":["C44T","G22599C","T23019C","C25171T"],"S":["R346T","F486S"]},"labels":{"aa":"S: R346T, F486S","spike_mutations":"R346T, F486S"}}},{"name":"CM.12","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"CM.12"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.468428823219232}},"branch_attrs":{"mutations":{"nuc":["C2197T","C17163T","T20748C","C27928T","T28282C"],"ORF8":["T12I"]},"labels":{"aa":"ORF8: T12I"}}},{"name":"CM.3","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6561529593771388"},"partiallyAliased":{"value":"BA.2.3.20.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.29833"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"CM.3"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7774189626371815}},"branch_attrs":{"mutations":{"nuc":["T11522G","G23016A"],"ORF1a":["F3753V"],"S":["G485D"]},"labels":{"aa":"ORF1a: F3753V; S: G485D","spike_mutations":"G485D"}}},{"name":"CM.9","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-11-10"},"Nextclade_pango":{"value":"CM.9"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.204739691895498}},"branch_attrs":{"mutations":{"nuc":["C22329T"],"S":["S256L"]},"labels":{"aa":"S: S256L","spike_mutations":"S256L"}}},{"name":"internal_2a9a","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.3.20.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.367826328440359}},"branch_attrs":{"mutations":{"nuc":["C6573T"],"ORF1a":["S2103F"]},"labels":{"aa":"ORF1a: S2103F"}},"children":[{"name":"CM.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"BA.2.3.20.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"CM.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.367826328440359}},"branch_attrs":{"mutations":{}}},{"name":"CM.2.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8335258095009974"},"partiallyAliased":{"value":"BA.2.3.20.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.24425000000000008"},"designation_date":{"value":"2022-11-22"},"Nextclade_pango":{"value":"CM.2.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254505702973777}},"branch_attrs":{"mutations":{"nuc":["G16089A","T23019C","G29779T"],"S":["F486S"]},"labels":{"aa":"S: F486S","spike_mutations":"F486S"}}}]},{"name":"NODE_0000050","node_attrs":{"div":29,"partiallyAliased":{"value":"BA.2.3.20.7"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.7"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-5.225547817562854}},"branch_attrs":{"mutations":{"nuc":["T23019C","T23020C"],"S":["F486S"]},"labels":{"aa":"S: F486S","spike_mutations":"F486S"}},"children":[{"name":"CM.7","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8335258095009974"},"partiallyAliased":{"value":"BA.2.3.20.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.24425000000000008"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"CM.7"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.083511903049173}},"branch_attrs":{"mutations":{"nuc":["A19865G"],"ORF1b":["N2133S"]},"labels":{"aa":"ORF1b: N2133S"}}},{"name":"NODE_0000051","node_attrs":{"div":30,"partiallyAliased":{"value":"BA.2.3.20.7.1"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"CM.7.1"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-6.500721921093293}},"branch_attrs":{"mutations":{"nuc":["A22001G"],"S":["K147E"]},"labels":{"aa":"S: K147E","spike_mutations":"K147E"}},"children":[{"name":"CM.7.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8335258095009974"},"partiallyAliased":{"value":"BA.2.3.20.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.24425000000000008"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"CM.7.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.500721921093293}},"branch_attrs":{"mutations":{}}},{"name":"CM.7.1.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8427717785526354"},"partiallyAliased":{"value":"BA.2.3.20.7.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.9729599999999999"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"CM.7.1.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907537061225634}},"branch_attrs":{"mutations":{"nuc":["C311T","G656A","G14500T","G22770A","C26801T"],"ORF1a":["L16F","A131T"],"ORF1b":["V345L"],"S":["R403K"]},"labels":{"aa":"ORF1a: L16F, A131T; ORF1b: V345L; S: R403K","spike_mutations":"R403K"}}}]}]}]}]}]},{"name":"internal_4a77","node_attrs":{"div":2,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-2.1119284910070903}},"branch_attrs":{"mutations":{"nuc":["C25416T"]}},"children":[{"name":"BA.2.17","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.17"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.095765818526557}},"branch_attrs":{"mutations":{"nuc":["G25909T","T29867A"],"ORF3a":["D173Y"]},"labels":{"aa":"ORF3a: D173Y"}}},{"name":"BA.2.21","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"BA.2.21"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8410226664567717}},"branch_attrs":{"mutations":{"nuc":["G3482A","A8763G","G12160A"],"ORF1a":["G1073R","D2833G"]},"labels":{"aa":"ORF1a: G1073R, D2833G"}}},{"name":"BA.2.37","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-03"},"Nextclade_pango":{"value":"BA.2.37"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0427296444268146}},"branch_attrs":{"mutations":{"nuc":["G4527A"],"ORF1a":["R1421K"]},"labels":{"aa":"ORF1a: R1421K"}}},{"name":"BA.2.57","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.57"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-09"},"Nextclade_pango":{"value":"BA.2.57"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.085014645402971}},"branch_attrs":{"mutations":{"nuc":["A6024G"],"ORF1a":["Y1920C"]},"labels":{"aa":"ORF1a: Y1920C"}}},{"name":"BA.2.66","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.66"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.66"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.582485214041111}},"branch_attrs":{"mutations":{"nuc":["C1204A","G3720A","C29625T"],"ORF1a":["N313K","G1152D"]},"labels":{"aa":"ORF1a: N313K, G1152D"}}},{"name":"BA.2.68","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.68"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.68"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9065786050659765}},"branch_attrs":{"mutations":{"nuc":["G13124A"],"ORF1a":["G4287R"]},"labels":{"aa":"ORF1a: G4287R"}}},{"name":"BA.2.73","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.73"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-13"},"Nextclade_pango":{"value":"BA.2.73"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.077806008790692}},"branch_attrs":{"mutations":{"nuc":["C7124T","G22331A"],"ORF1a":["P2287S"],"S":["G257S"]},"labels":{"aa":"ORF1a: P2287S; S: G257S","spike_mutations":"G257S"}}},{"name":"BA.2.74","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.3475462623597209"},"partiallyAliased":{"value":"BA.2.74"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.21698000000000003"},"designation_date":{"value":"2022-06-23"},"Nextclade_pango":{"value":"BA.2.74"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8875377343189106}},"branch_attrs":{"mutations":{"nuc":["A1T","C583T","C14925T","G22599C","C22916A","C26110T"],"ORF3a":["P240S"],"S":["R346T","L452M"]},"labels":{"aa":"ORF3a: P240S; S: R346T, L452M","spike_mutations":"R346T, L452M"}}},{"name":"BA.2.78","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.78"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.10556"},"designation_date":{"value":"2022-07-07"},"Nextclade_pango":{"value":"BA.2.78"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.552454596312465}},"branch_attrs":{"mutations":{"nuc":["A10323G","C22916A","G29628T","A29700G"],"ORF1a":["K3353R"],"S":["L452M"]},"labels":{"aa":"ORF1a: K3353R; S: L452M","spike_mutations":"L452M"}}},{"name":"NODE_0000053","node_attrs":{"div":3,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.0457477711257126}},"branch_attrs":{"mutations":{"nuc":["C16887T"]}},"children":[{"name":"BA.2.67","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.67"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"BA.2.67"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.644041217948608}},"branch_attrs":{"mutations":{"nuc":["T8023C","T13216G"],"ORF1a":["D4317E"]},"labels":{"aa":"ORF1a: D4317E"}}},{"name":"NODE_0000054","node_attrs":{"div":6,"partiallyAliased":{"value":"BA.2.79"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.79"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.966611376386185}},"branch_attrs":{"mutations":{"nuc":["C16393T","A22305C","A22910G"],"ORF1b":["P976S"],"S":["Y248S","N450D"]},"labels":{"aa":"ORF1b: P976S; S: Y248S, N450D","spike_mutations":"Y248S, N450D"}},"children":[{"name":"BA.2.79","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.15239383266978268"},"partiallyAliased":{"value":"BA.2.79"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.058580000000000014"},"designation_date":{"value":"2022-07-07"},"Nextclade_pango":{"value":"BA.2.79"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.966611376386185}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.79.1","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.15239383266978268"},"partiallyAliased":{"value":"BA.2.79.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.058580000000000014"},"designation_date":{"value":"2022-07-07"},"Nextclade_pango":{"value":"BA.2.79.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.301769827627247}},"branch_attrs":{"mutations":{"nuc":["C6312T","A17713G"],"ORF1a":["T2016I"],"ORF1b":["I1416V"]},"labels":{"aa":"ORF1a: T2016I; ORF1b: I1416V"}}}]}]},{"name":"NODE_0000055","node_attrs":{"div":4,"partiallyAliased":{"value":"BA.2.76"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.76"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.679023582420414}},"branch_attrs":{"mutations":{"nuc":["T22304A","G22599C"],"S":["Y248N","R346T"]},"labels":{"aa":"S: Y248N, R346T","spike_mutations":"Y248N, R346T"}},"children":[{"name":"BA.2.76","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.21548712660915123"},"partiallyAliased":{"value":"BA.2.76"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.11142000000000006"},"designation_date":{"value":"2022-07-02"},"Nextclade_pango":{"value":"BA.2.76"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.679023582420414}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000056","node_attrs":{"div":6,"partiallyAliased":{"value":"BA.2.76"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.76"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.211080572958803}},"branch_attrs":{"mutations":{"nuc":["C7528T","G19684T"],"ORF1b":["V2073L"]},"labels":{"aa":"ORF1b: V2073L"}},"children":[{"name":"BA.2.76.1","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.28000063743525844"},"partiallyAliased":{"value":"BA.2.76.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.18492"},"designation_date":{"value":"2022-08-10"},"Nextclade_pango":{"value":"BA.2.76.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.091146928558343}},"branch_attrs":{"mutations":{"nuc":["G5048A","C18555T","G22632A","T29233A"],"ORF1a":["G1595S"],"S":["R357K"]},"labels":{"aa":"ORF1a: G1595S; S: R357K","spike_mutations":"R357K"}}},{"name":"BA.2.76.2","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.21548712660915123"},"partiallyAliased":{"value":"BA.2.76.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.11142000000000006"},"designation_date":{"value":"2022-08-19"},"Nextclade_pango":{"value":"BA.2.76.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.054972645695149}},"branch_attrs":{"mutations":{"nuc":["G11453A","A22115C","C28603T"],"ORF1a":["A3730T"],"S":["N185H"]},"labels":{"aa":"ORF1a: A3730T; S: N185H","spike_mutations":"N185H"}}}]}]},{"name":"internal_ab43","node_attrs":{"div":3,"partiallyAliased":{"value":"BA.2.38"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.38"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.4227156166722743}},"branch_attrs":{"mutations":{"nuc":["A22812C"],"S":["N417T"]},"labels":{"aa":"S: N417T","spike_mutations":"N417T"}},"children":[{"name":"BA.2.38","node_attrs":{"div":3,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.047315972860990416"},"partiallyAliased":{"value":"BA.2.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.23107"},"designation_date":{"value":"2022-05-06"},"Nextclade_pango":{"value":"BA.2.38"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4227156166722743}},"branch_attrs":{"mutations":{}}},{"name":"internal_1a32","node_attrs":{"div":8,"partiallyAliased":{"value":"BA.2.38.3"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.38.3"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.895589142740945}},"branch_attrs":{"mutations":{"nuc":["C21622T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","C21774T","C22786T","A22995G","G25352T"],"S":["H69-","V70-","S71F","K478R","V1264L"]},"labels":{"aa":"S: H69-, V70-, S71F, K478R, V1264L","spike_mutations":"H69-, V70-, S71F, K478R, V1264L"}},"children":[{"name":"BA.2.38.3","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.050443241158159235"},"partiallyAliased":{"value":"BA.2.38.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.08445999999999997"},"designation_date":{"value":"2022-08-06"},"Nextclade_pango":{"value":"BA.2.38.3"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.895589142740945}},"branch_attrs":{"mutations":{}}},{"name":"BH.1","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.35298099769435154"},"partiallyAliased":{"value":"BA.2.38.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0.11188000000000006"},"designation_date":{"value":"2022-08-08"},"Nextclade_pango":{"value":"BH.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.578739125840035}},"branch_attrs":{"mutations":{"nuc":["T3905A","C10335G","T21992-","A21993-","T21994-","G22898A","T22917A"],"ORF1a":["F1214I","A3357G"],"S":["Y144-","G446S","L452Q"]},"labels":{"aa":"ORF1a: F1214I, A3357G; S: Y144-, G446S, L452Q","spike_mutations":"Y144-, G446S, L452Q"}}}]},{"name":"NODE_0000059","node_attrs":{"div":3,"partiallyAliased":{"value":"BA.2.38"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.38"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.9609007267463436}},"branch_attrs":{"mutations":{"nuc":["G22894C"],"S":["K444N"]},"labels":{"aa":"S: K444N","spike_mutations":"K444N"}},"children":[{"name":"BA.2.38.1","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.22640031950314557"},"partiallyAliased":{"value":"BA.2.38.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.07569000000000004"},"designation_date":{"value":"2022-07-07"},"Nextclade_pango":{"value":"BA.2.38.1"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.032131642905157}},"branch_attrs":{"mutations":{"nuc":["T2C","G22225A","G22302A","A22305C","C22894T","G29779T"],"S":["S247N","Y248S"]},"labels":{"aa":"S: S247N, Y248S","spike_mutations":"S247N, Y248S"}}},{"name":"NODE_0000060","node_attrs":{"div":5,"partiallyAliased":{"value":"BA.2.38"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.38"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-4.982627823559881}},"branch_attrs":{"mutations":{"nuc":["T7153C"]}},"children":[{"name":"BA.2.38.2","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.22640031950314557"},"partiallyAliased":{"value":"BA.2.38.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.07569000000000004"},"designation_date":{"value":"2022-07-24"},"Nextclade_pango":{"value":"BA.2.38.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4220380441717975}},"branch_attrs":{"mutations":{"nuc":["C4893T","A11439G","C13329T","C17373T","T22032C"],"ORF1a":["T1543I","N3725S","T4355I"],"S":["F157S"]},"labels":{"aa":"ORF1a: T1543I, N3725S, T4355I; S: F157S","spike_mutations":"F157S"}}},{"name":"BA.2.38.4","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.22640031950314557"},"partiallyAliased":{"value":"BA.2.38.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.07569000000000004"},"designation_date":{"value":"2022-10-12"},"Nextclade_pango":{"value":"BA.2.38.4"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4444387278272615}},"branch_attrs":{"mutations":{"nuc":["A22001G","A23636C"],"S":["K147E","I692L"]},"labels":{"aa":"S: K147E, I692L","spike_mutations":"K147E, I692L"}}}]}]}]},{"name":"internal_096a","node_attrs":{"div":4,"partiallyAliased":{"value":"BA.2.12"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2.12"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.725403987174557}},"branch_attrs":{"mutations":{"nuc":["C11674T","C23673T"],"S":["S704L"]},"labels":{"aa":"S: S704L","spike_mutations":"S704L"}},"children":[{"name":"BA.2.12","node_attrs":{"div":4,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"BA.2.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-06"},"Nextclade_pango":{"value":"BA.2.12"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.725403987174557}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.12.2","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.0606644813713417"},"partiallyAliased":{"value":"BA.2.12.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"21L"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"21L (BA.2)"},"ace2_binding":{"value":"0.07350000000000005"},"designation_date":{"value":"2022-06-11"},"Nextclade_pango":{"value":"BA.2.12.2"},"clade_nextstrain":{"value":"21L"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.983388799556496}},"branch_attrs":{"mutations":{"nuc":["C17586T","G22632A","A27578G"],"ORF7a":["Q62R"],"S":["R357K"]},"labels":{"aa":"ORF7a: Q62R; S: R357K","spike_mutations":"R357K"}}},{"name":"NODE_0000062","node_attrs":{"div":5,"partiallyAliased":{"value":"BA.2.12.1"},"clade_membership":{"value":"22C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22C (BA.2.12.1)"},"Nextclade_pango":{"value":"BA.2.12.1"},"clade_nextstrain":{"value":"22C"},"placement_prior":{"value":-3.0571260068246597}},"branch_attrs":{"mutations":{"nuc":["T22917A"],"S":["L452Q"]},"labels":{"aa":"S: L452Q","clade":"22C","spike_mutations":"L452Q"}},"children":[{"name":"BA.2.12.1","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-04-06"},"Nextclade_pango":{"value":"BA.2.12.1"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0571260068246597}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000063","node_attrs":{"div":7,"partiallyAliased":{"value":"BA.2.12.1"},"clade_membership":{"value":"22C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22C (BA.2.12.1)"},"Nextclade_pango":{"value":"BA.2.12.1"},"clade_nextstrain":{"value":"22C"},"placement_prior":{"value":-1.8056258693543787}},"branch_attrs":{"mutations":{"nuc":["T15009C","C21721T"]}},"children":[{"name":"BG.1","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-06-14"},"Nextclade_pango":{"value":"BG.1"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.710483787740539}},"branch_attrs":{"mutations":{"nuc":["C6070T","A6458G","G16207A"],"ORF1a":["N2065D"],"ORF1b":["A914T"]},"labels":{"aa":"ORF1a: N2065D; ORF1b: A914T"}}},{"name":"BG.2","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-06-18"},"Nextclade_pango":{"value":"BG.2"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.03035052931461}},"branch_attrs":{"mutations":{"nuc":["T11522G","C11575T","C16092T","G25352T","C25521T","G27798T","C27945T","C29118T"],"N":["T282I"],"ORF1a":["F3753V"],"ORF7b":["A15S"],"ORF8":["Q18*"],"S":["V1264L"]},"labels":{"aa":"N: T282I; ORF1a: F3753V; ORF7b: A15S; ORF8: Q18*; S: V1264L","spike_mutations":"V1264L"}}},{"name":"BG.3","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BG.3"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.845314618057877}},"branch_attrs":{"mutations":{"nuc":["A9164G","T13417C"],"ORF1a":["T2967A"]},"labels":{"aa":"ORF1a: T2967A"}}},{"name":"BG.4","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BG.4"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.274299466673397}},"branch_attrs":{"mutations":{"nuc":["G4510T","T7098C","C17977T","C28708T","C28758T"],"N":["P162L"],"ORF1a":["I2278T"],"ORF1b":["L1504F"]},"labels":{"aa":"N: P162L; ORF1a: I2278T; ORF1b: L1504F"}}},{"name":"BG.5","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-07-28"},"Nextclade_pango":{"value":"BG.5"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.847053393278145}},"branch_attrs":{"mutations":{"nuc":["C44T","A12180G"],"ORF1a":["D3972G"]},"labels":{"aa":"ORF1a: D3972G"}}},{"name":"BG.6","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-08-01"},"Nextclade_pango":{"value":"BG.6"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.343498558913815}},"branch_attrs":{"mutations":{"nuc":["C5284T","G13061A","G25166C"],"ORF1a":["V4266I"],"S":["E1202Q"]},"labels":{"aa":"ORF1a: V4266I; S: E1202Q","spike_mutations":"E1202Q"}}},{"name":"BG.7","node_attrs":{"div":14,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.1718042480715419"},"partiallyAliased":{"value":"BA.2.12.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22C (BA.2.12.1)"},"ace2_binding":{"value":"-0.1269299999999999"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BG.7"},"clade_nextstrain":{"value":"22C"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.30568777722153}},"branch_attrs":{"mutations":{"nuc":["C904T","G2441A","T3324C","T5161A","T7226C","C18747T","C27630T"],"ORF1a":["E726K","V1020A","F1632L","F2321L"]},"labels":{"aa":"ORF1a: E726K, V1020A, F1632L, F2321L"}}}]}]}]},{"name":"NODE_0000064","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.2.75"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.9311947197853114}},"branch_attrs":{"mutations":{"nuc":["C3796T","C3927T","C4586T","C5183T","A12444G","G15451A","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22898A","T22942G","G23040A","A26275G"],"E":["T11A"],"ORF1a":["S1221L","P1640S","N4060S"],"ORF1b":["G662S"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","G446S","N460K","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: S1221L, P1640S, N4060S; ORF1b: G662S; S: K147E, W152R, F157L, I210V, G257S, D339H, G446S, N460K, R493Q","clade":"22D","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, G446S, N460K, R493Q"}},"children":[{"name":"BA.2.75","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BA.2.75"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9311947197853114}},"branch_attrs":{"mutations":{}}},{"name":"BA.2.75.10","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BA.2.75.10"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3842713654268355}},"branch_attrs":{"mutations":{"nuc":["A12140G"],"ORF1a":["T3959A"]},"labels":{"aa":"ORF1a: T3959A"}}},{"name":"BA.2.75.7","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.37520611252942654"},"partiallyAliased":{"value":"BA.2.75.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.35628"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BA.2.75.7"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.640558148517866}},"branch_attrs":{"mutations":{"nuc":["C44T","T23019C"],"S":["F486S"]},"labels":{"aa":"S: F486S","spike_mutations":"F486S"}}},{"name":"BA.2.75.8","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.3644849119096625"},"partiallyAliased":{"value":"BA.2.75.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.04854"},"designation_date":{"value":"2022-09-20"},"Nextclade_pango":{"value":"BA.2.75.8"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16735626437147}},"branch_attrs":{"mutations":{"nuc":["C44T","T1536C","G3774A","C3961T","A14963G","T18471C","T22917A","C23635T"],"ORF1a":["V424A","R1170H"],"ORF1b":["K499R"],"S":["L452Q"]},"labels":{"aa":"ORF1a: V424A, R1170H; ORF1b: K499R; S: L452Q","spike_mutations":"L452Q"}}},{"name":"internal_2dc7","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.2.75.9"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.9"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.595324736278115}},"branch_attrs":{"mutations":{"nuc":["G17679T","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.2.75.9","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.2.75.9"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.595324736278115}},"branch_attrs":{"mutations":{}}},{"name":"CB.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.9.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.81858"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"CB.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.632383390271301}},"branch_attrs":{"mutations":{"nuc":["T23018G"],"S":["F486V"]},"labels":{"aa":"S: F486V","spike_mutations":"F486V"}}}]},{"name":"BA2754","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.2.75.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.317734857570847}},"branch_attrs":{"mutations":{"nuc":["C9532T","G19962T","T22917G"],"S":["L452R"]},"labels":{"aa":"S: L452R","spike_mutations":"L452R"}},"children":[{"name":"BA.2.75.4","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.3644849119096625"},"partiallyAliased":{"value":"BA.2.75.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.13451"},"designation_date":{"value":"2022-08-21"},"Nextclade_pango":{"value":"BA.2.75.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.317734857570847}},"branch_attrs":{"mutations":{"nuc":["C44T"]}}},{"name":"BR.2","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.3644849119096625"},"partiallyAliased":{"value":"BA.2.75.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.13451"},"designation_date":{"value":"2022-09-17"},"Nextclade_pango":{"value":"BR.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.317734857570847}},"branch_attrs":{"mutations":{}}},{"name":"BR.2.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8052662235545595"},"partiallyAliased":{"value":"BA.2.75.4.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.7472099999999999"},"designation_date":{"value":"2022-11-09"},"Nextclade_pango":{"value":"BR.2.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.354024552118777}},"branch_attrs":{"mutations":{"nuc":["C21054T","G22599C","T23018A","C28093T"],"ORF8":["S67F"],"S":["R346T","F486I"]},"labels":{"aa":"ORF8: S67F; S: R346T, F486I","spike_mutations":"R346T, F486I"}}},{"name":"internal_b66e","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.2.75.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.72666706156571}},"branch_attrs":{"mutations":{"nuc":["C44T","G8602A"]}},"children":[{"name":"BR.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.5411505542431504"},"partiallyAliased":{"value":"BA.2.75.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.24593"},"designation_date":{"value":"2022-09-21"},"Nextclade_pango":{"value":"BR.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5162179985534365}},"branch_attrs":{"mutations":{"nuc":["A13498G","G22599C"],"ORF1b":["T11A"],"S":["R346T"]},"labels":{"aa":"ORF1b: T11A; S: R346T","spike_mutations":"R346T"}}},{"name":"NODE_0000068","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.4.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BR.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.457919945171887}},"branch_attrs":{"mutations":{"nuc":["A22893T"],"S":["K444M"]},"labels":{"aa":"S: K444M","spike_mutations":"K444M"}},"children":[{"name":"BR.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.46093339767686115"},"partiallyAliased":{"value":"BA.2.75.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.9449499999999998"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BR.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.457919945171887}},"branch_attrs":{"mutations":{}}},{"name":"BR.1.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.46093339767686115"},"partiallyAliased":{"value":"BA.2.75.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.9449499999999998"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BR.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.199845142363432}},"branch_attrs":{"mutations":{"nuc":["G21724A","A22481T","T23431C","C23683T","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"S":["T307S"]},"labels":{"aa":"S: T307S","spike_mutations":"T307S"}}},{"name":"BR.1.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7062425372120223"},"partiallyAliased":{"value":"BA.2.75.4.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.12575999999999996"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BR.1.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.729238604256968}},"branch_attrs":{"mutations":{"nuc":["T20605C","T23019C","T27071G"],"ORF1b":["F2380L"],"S":["F486S"]},"labels":{"aa":"ORF1b: F2380L; S: F486S","spike_mutations":"F486S"}}}]},{"name":"NODE_0000069","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.389374574100634}},"branch_attrs":{"mutations":{"nuc":["A22893C"],"S":["K444T"]},"labels":{"aa":"S: K444T","spike_mutations":"K444T"}},"children":[{"name":"BR.4","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.41153440903647515"},"partiallyAliased":{"value":"BA.2.75.4.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.10514"},"designation_date":{"value":"2022-10-12"},"Nextclade_pango":{"value":"BR.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.421526184847485}},"branch_attrs":{"mutations":{"nuc":["A22898G","C25487T"],"ORF3a":["T32I"],"S":["S446G"]},"labels":{"aa":"ORF3a: T32I; S: S446G","spike_mutations":"S446G"}}},{"name":"NODE_0000070","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.75.4.5"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BR.5"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.588764719609849}},"branch_attrs":{"mutations":{"nuc":["A12306G","A23283T","A26612T"],"ORF1a":["K4014R"],"S":["D574V"]},"labels":{"aa":"ORF1a: K4014R; S: D574V","spike_mutations":"D574V"}},"children":[{"name":"BR.5","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.46093339767686115"},"partiallyAliased":{"value":"BA.2.75.4.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.03573"},"designation_date":{"value":"2023-01-27"},"Nextclade_pango":{"value":"BR.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.588764719609849}},"branch_attrs":{"mutations":{}}},{"name":"BR.5.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.46093339767686115"},"partiallyAliased":{"value":"BA.2.75.4.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.03573"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"BR.5.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.539771188804138}},"branch_attrs":{"mutations":{"nuc":["G6352T","C18032T","A20289G","G25494C"],"ORF1a":["K2029N"],"ORF1b":["T1522I"]},"labels":{"aa":"ORF1a: K2029N; ORF1b: T1522I"}}}]}]}]}]},{"name":"NODE_0000071","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.2.75.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.092002232281871}},"branch_attrs":{"mutations":{"nuc":["A23283T"],"S":["D574V"]},"labels":{"aa":"S: D574V","spike_mutations":"D574V"}},"children":[{"name":"BA.2.75.1","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-08-03"},"Nextclade_pango":{"value":"BA.2.75.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.092002232281871}},"branch_attrs":{"mutations":{}}},{"name":"BL.4","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BL.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.566446350402324}},"branch_attrs":{"mutations":{"nuc":["C11224T","A22720G","C27527T"],"ORF7a":["P45L"]},"labels":{"aa":"ORF7a: P45L"}}},{"name":"NODE_0000072","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.2.75.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.183623455864968}},"branch_attrs":{"mutations":{"nuc":["G204A","A26612T"]}},"children":[{"name":"BL.3","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BL.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.733578831730486}},"branch_attrs":{"mutations":{"nuc":["C8318T"],"ORF1a":["P2685S"]},"labels":{"aa":"ORF1a: P2685S"}}},{"name":"BL.5","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.16854"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"BL.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907448232484907}},"branch_attrs":{"mutations":{"nuc":["G18443T","A22600T","C27903T","C28744T","G29179C","C29375T","G29540T"],"N":["P368S"],"ORF1b":["R1659I"],"ORF8":["L4F"],"S":["R346S"]},"labels":{"aa":"N: P368S; ORF1b: R1659I; ORF8: L4F; S: R346S","spike_mutations":"R346S"}}},{"name":"NODE_0000073","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.2.75.1.2"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BL.2"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.639126738133086}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BL.2","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BL.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.639126738133086}},"branch_attrs":{"mutations":{}}},{"name":"BL.2.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BL.2.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.96944129352598}},"branch_attrs":{"mutations":{"nuc":["C15277T","A22106G"],"ORF1b":["H604Y"],"S":["K182E"]},"labels":{"aa":"ORF1b: H604Y; S: K182E","spike_mutations":"K182E"}}}]}]},{"name":"NODE_0000074","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.2.75.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BL.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.134605974292999}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BL.1","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-08-21"},"Nextclade_pango":{"value":"BL.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.134605974292999}},"branch_attrs":{"mutations":{}}},{"name":"BL.1.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-09-17"},"Nextclade_pango":{"value":"BL.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.479916252653868}},"branch_attrs":{"mutations":{"nuc":["C10336T","G23402A","A29700G"],"S":["G614S"]},"labels":{"aa":"S: G614S","spike_mutations":"G614S"}}},{"name":"BL.1.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-09-17"},"Nextclade_pango":{"value":"BL.1.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.751422788492453}},"branch_attrs":{"mutations":{"nuc":["G22344A","G22484T","T25476C","A25506G"],"S":["G261D","V308L"]},"labels":{"aa":"S: G261D, V308L","spike_mutations":"G261D, V308L"}}},{"name":"BL.1.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.571450877330628"},"partiallyAliased":{"value":"BA.2.75.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.19193"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BL.1.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.284957986863458}},"branch_attrs":{"mutations":{"nuc":["C21302T","C21304A","G21305A","T23030C","T29867A"],"ORF1b":["P2612L","R2613N"],"S":["F490L"]},"labels":{"aa":"ORF1b: P2612L, R2613N; S: F490L","spike_mutations":"F490L"}}},{"name":"BL.1.4","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.571450877330628"},"partiallyAliased":{"value":"BA.2.75.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.3464399999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BL.1.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.184764757686821}},"branch_attrs":{"mutations":{"nuc":["C4456T","T6086C","G17756A","T23030G","T27846C"],"ORF1b":["R1430K"],"ORF7b":["S31P"],"S":["F490V"]},"labels":{"aa":"ORF1b: R1430K; ORF7b: S31P; S: F490V","spike_mutations":"F490V"}}},{"name":"BL.1.5","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.5702322973095507"},"partiallyAliased":{"value":"BA.2.75.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.56756"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"BL.1.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.925631241735997}},"branch_attrs":{"mutations":{"nuc":["C44T","C9592T","C22986T","C22993T"],"S":["A475V"]},"labels":{"aa":"S: A475V","spike_mutations":"A475V"}}},{"name":"BL.6","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.4517522963970434"},"partiallyAliased":{"value":"BA.2.75.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.11979"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"BL.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.731657272420985}},"branch_attrs":{"mutations":{"nuc":["C44T","C3653T","C7564T","T13527C","T22896C","C25276A","C25339T","C29640T"],"ORF1a":["L1130F"],"S":["V445A"]},"labels":{"aa":"ORF1a: L1130F; S: V445A","spike_mutations":"V445A"}}}]}]},{"name":"internal_94e7","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.2.75.6"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.6"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.745984212096151}},"branch_attrs":{"mutations":{"nuc":["C44T","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.2.75.6","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BA.2.75.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.745984212096151}},"branch_attrs":{"mutations":{}}},{"name":"internal_c7e6","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.2.75.6.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BY.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.228792483465241}},"branch_attrs":{"mutations":{"nuc":["T23019C"],"S":["F486S"]},"labels":{"aa":"S: F486S","spike_mutations":"F486S"}},"children":[{"name":"BY.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-09-19"},"Nextclade_pango":{"value":"BY.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.228792483465241}},"branch_attrs":{"mutations":{}}},{"name":"internal_1967","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.2.75.6.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BY.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.078579761029609}},"branch_attrs":{"mutations":{"nuc":["T22917G"],"S":["L452R"]},"labels":{"aa":"S: L452R","spike_mutations":"L452R"}},"children":[{"name":"BY.1.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8052662235545595"},"partiallyAliased":{"value":"BA.2.75.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42674000000000006"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"BY.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.078579761029609}},"branch_attrs":{"mutations":{}}},{"name":"BY.1.1.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8052662235545595"},"partiallyAliased":{"value":"BA.2.75.6.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42674000000000006"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"BY.1.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167313909487077}},"branch_attrs":{"mutations":{"nuc":["A1034G","A8577G","G8999T","A22115G","A22182G"],"ORF1a":["I257V","K2771R","A2912S"],"S":["N185D","H207R"]},"labels":{"aa":"ORF1a: I257V, K2771R, A2912S; S: N185D, H207R","spike_mutations":"N185D, H207R"}}}]},{"name":"internal_147e","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.2.75.6.1.2"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BY.1.2"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.577640086845188}},"branch_attrs":{"mutations":{"nuc":["G26828T"]}},"children":[{"name":"BY.1.2","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.6.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"BY.1.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.577640086845188}},"branch_attrs":{"mutations":{}}},{"name":"BY.1.2.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6700845939923116"},"partiallyAliased":{"value":"BA.2.75.6.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.41646999999999995"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"BY.1.2.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.6054953360703585}},"branch_attrs":{"mutations":{"nuc":["G370T","G567T","G12797A","T23042C","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"ORF1a":["G101V","G4178S"],"S":["S494P"]},"labels":{"aa":"ORF1a: G101V, G4178S; S: S494P","spike_mutations":"S494P"}}}]},{"name":"internal_a555","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.2"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.2"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.7733049334676854}},"branch_attrs":{"mutations":{"nuc":["T44C","C5192T","G25157A"],"S":["D1199N"]},"labels":{"aa":"S: D1199N","spike_mutations":"D1199N"}},"children":[{"name":"BA.2.75.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-08-19"},"Nextclade_pango":{"value":"BA.2.75.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7733049334676854}},"branch_attrs":{"mutations":{}}},{"name":"CA.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8052662235545595"},"partiallyAliased":{"value":"BA.2.75.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42674000000000006"},"designation_date":{"value":"2022-09-21"},"Nextclade_pango":{"value":"CA.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4927768840512865}},"branch_attrs":{"mutations":{"nuc":["C2925T","C6336T","T22917G","C23373T","G25522A"],"ORF1a":["S887F","S2024L"],"ORF3a":["G44R"],"S":["L452R","T604I"]},"labels":{"aa":"ORF1a: S887F, S2024L; ORF3a: G44R; S: L452R, T604I","spike_mutations":"L452R, T604I"}}},{"name":"CA.2","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6700845939923116"},"partiallyAliased":{"value":"BA.2.75.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.41646999999999995"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"CA.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8463363345945}},"branch_attrs":{"mutations":{"nuc":["C44T","T23042C"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}}},{"name":"CA.4","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.07323"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"CA.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363555197720019}},"branch_attrs":{"mutations":{"nuc":["G1820A","G3250T","C7431T","T23018C","C25378T"],"ORF1a":["G519S","E995D","S2389L"],"S":["S486P"]},"labels":{"aa":"ORF1a: G519S, E995D, S2389L; S: S486P","spike_mutations":"S486P"}}},{"name":"CA.5","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"CA.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.731665942072673}},"branch_attrs":{"mutations":{"nuc":["C2245T","C22341A","G23401T","T27104C"],"S":["A260D","Q613H"]},"labels":{"aa":"S: A260D, Q613H","spike_mutations":"A260D, Q613H"}}},{"name":"CA.6","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"CA.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.638106420389525}},"branch_attrs":{"mutations":{"nuc":["T851C"],"ORF1a":["Y196H"]},"labels":{"aa":"ORF1a: Y196H"}}},{"name":"CA.7","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8052662235545595"},"partiallyAliased":{"value":"BA.2.75.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42674000000000006"},"designation_date":{"value":"2022-10-24"},"Nextclade_pango":{"value":"CA.7"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.279368972357984}},"branch_attrs":{"mutations":{"nuc":["G943A","C11591A","T17505C","T22917G"],"ORF1a":["L3776I"],"S":["L452R"]},"labels":{"aa":"ORF1a: L3776I; S: L452R","spike_mutations":"L452R"}}},{"name":"internal_80b8","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.2.75.2.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"CA.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.936516590111648}},"branch_attrs":{"mutations":{"nuc":["G28576C"],"N":["M101I"],"ORF9b":["*98S"]},"labels":{"aa":"N: M101I; ORF9b: *98S"}},"children":[{"name":"CA.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"CA.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.936516590111648}},"branch_attrs":{"mutations":{}}},{"name":"CA.3.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.2.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.2371799999999999"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"CA.3.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.67305409165756}},"branch_attrs":{"mutations":{"nuc":["T22384C","A22893T","T22917G","T28672A"],"S":["K444M","L452R"]},"labels":{"aa":"S: K444M, L452R","spike_mutations":"K444M, L452R"}}}]}]}]}]},{"name":"internal_75e5","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.2.75.5"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.5"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.1600815095985695}},"branch_attrs":{"mutations":{"nuc":["A22629C"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}},"children":[{"name":"BA.2.75.5","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40056346367685486"},"partiallyAliased":{"value":"BA.2.75.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.1724299999999999"},"designation_date":{"value":"2022-08-22"},"Nextclade_pango":{"value":"BA.2.75.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1600815095985695}},"branch_attrs":{"mutations":{}}},{"name":"BN.4","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.5637276003498602"},"partiallyAliased":{"value":"BA.2.75.5.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.14197"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.942899967989585}},"branch_attrs":{"mutations":{"nuc":["G1440A","T23031C"],"ORF1a":["G392D"],"S":["F490S"]},"labels":{"aa":"ORF1a: G392D; S: F490S","spike_mutations":"F490S"}}},{"name":"BN.5","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40056346367685486"},"partiallyAliased":{"value":"BA.2.75.5.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.1724299999999999"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.542940059811818}},"branch_attrs":{"mutations":{"nuc":["G9128A"],"ORF1a":["V2955M"]},"labels":{"aa":"ORF1a: V2955M"}}},{"name":"BN.6","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40056346367685486"},"partiallyAliased":{"value":"BA.2.75.5.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.1724299999999999"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.597127406106119}},"branch_attrs":{"mutations":{"nuc":["A1G","A12140G"],"ORF1a":["T3959A"]},"labels":{"aa":"ORF1a: T3959A"}}},{"name":"internal_40f9","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.2.75.5.2"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.2"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.203785398311061}},"branch_attrs":{"mutations":{"nuc":["C44T","A28761T","G29868C"],"N":["Q163L"]},"labels":{"aa":"N: Q163L"}},"children":[{"name":"BN.2","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40056346367685486"},"partiallyAliased":{"value":"BA.2.75.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.1724299999999999"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BN.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.203785398311061}},"branch_attrs":{"mutations":{}}},{"name":"BN.2.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.5637276003498602"},"partiallyAliased":{"value":"BA.2.75.5.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.14197"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BN.2.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.275430510697988}},"branch_attrs":{"mutations":{"nuc":["C21707T","T23031C"],"S":["H49Y","F490S"]},"labels":{"aa":"S: H49Y, F490S","spike_mutations":"H49Y, F490S"}}}]},{"name":"internal_ece3","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.5.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.5096245483665856}},"branch_attrs":{"mutations":{"nuc":["C1093T","G1440A","A1964G","C21077T","A22910G"],"ORF1a":["G392D","I567V"],"ORF1b":["T2537I"],"S":["N450D"]},"labels":{"aa":"ORF1a: G392D, I567V; ORF1b: T2537I; S: N450D","spike_mutations":"N450D"}},"children":[{"name":"BN.3","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.5401418045789983"},"partiallyAliased":{"value":"BA.2.75.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.11385"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5096245483665856}},"branch_attrs":{"mutations":{}}},{"name":"BN.3.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6874771796544517"},"partiallyAliased":{"value":"BA.2.75.5.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.08339"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.3.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.00196772763671}},"branch_attrs":{"mutations":{"nuc":["A5844G","C8597T","T23031C"],"ORF1a":["K1860R","L2778F"],"S":["F490S"]},"labels":{"aa":"ORF1a: K1860R, L2778F; S: F490S","spike_mutations":"F490S"}}}]},{"name":"NODE_0000084","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.2.75.5.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.7275744825672414}},"branch_attrs":{"mutations":{"nuc":["A1T","C20235T","G22599C","T23031C"],"S":["R346T","F490S"]},"labels":{"aa":"S: R346T, F490S","spike_mutations":"R346T, F490S"}},"children":[{"name":"BN.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-09-02"},"Nextclade_pango":{"value":"BN.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7275744825672414}},"branch_attrs":{"mutations":{}}},{"name":"BN.1.10","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BN.1.10"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.270463958921732}},"branch_attrs":{"mutations":{"nuc":["T21995C"],"S":["Y145H"]},"labels":{"aa":"S: Y145H","spike_mutations":"Y145H"}}},{"name":"BN.1.11","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BN.1.11"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.907718622163093}},"branch_attrs":{"mutations":{"nuc":["C2462T","A3829G","C6701T","C7471T","C22088T","G24368C","C27649T"],"ORF1a":["L2146F"],"S":["L176F","D936H"]},"labels":{"aa":"ORF1a: L2146F; S: L176F, D936H","spike_mutations":"L176F, D936H"}}},{"name":"BN.1.6","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BN.1.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.402944303781793}},"branch_attrs":{"mutations":{"nuc":["G24977C","G29072T"],"N":["A267S"],"S":["D1139H"]},"labels":{"aa":"N: A267S; S: D1139H","spike_mutations":"D1139H"}}},{"name":"BN.1.7","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-11-10"},"Nextclade_pango":{"value":"BN.1.7"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1285289029087835}},"branch_attrs":{"mutations":{"nuc":["T22092C","A22194-","T22195-","T22196-","C22858T","C24863T"],"S":["M177T","V210-","N211V","L212I","H1101Y"]},"labels":{"aa":"S: M177T, V210-, N211V, L212I, H1101Y","spike_mutations":"M177T, V210-, N211V, L212I, H1101Y"}}},{"name":"BN.1.8","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.993088565158045"},"partiallyAliased":{"value":"BA.2.75.5.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.5340599999999999"},"designation_date":{"value":"2022-11-22"},"Nextclade_pango":{"value":"BN.1.8"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032640237725003}},"branch_attrs":{"mutations":{"nuc":["C13665T","T17166G","T21628C","C22986T"],"S":["A475V"]},"labels":{"aa":"S: A475V","spike_mutations":"A475V"}}},{"name":"NODE_0000085","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.2.75.5.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.411169882191129}},"branch_attrs":{"mutations":{"nuc":["T23042C","C28585T"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}},"children":[{"name":"BN.1.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7798591800949757"},"partiallyAliased":{"value":"BA.2.75.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.2021600000000001"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BN.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.411169882191129}},"branch_attrs":{"mutations":{}}},{"name":"BN.1.1.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7798591800949757"},"partiallyAliased":{"value":"BA.2.75.5.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.2021600000000001"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.1.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.249747302682193}},"branch_attrs":{"mutations":{"nuc":["A22115G","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"S":["N185D"]},"labels":{"aa":"S: N185D","spike_mutations":"N185D"}}}]},{"name":"NODE_0000086","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.2.75.5.1.5"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.5"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.961921964852823}},"branch_attrs":{"mutations":{"nuc":["C6573T","G20774A"],"ORF1a":["S2103F"],"ORF1b":["G2436D"]},"labels":{"aa":"ORF1a: S2103F; ORF1b: G2436D"}},"children":[{"name":"BN.1.5","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BN.1.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.961921964852823}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000087","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.75.5.1.5"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.5"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.6121910925576195}},"branch_attrs":{"mutations":{"nuc":["C4901T","C5986T"]}},"children":[{"name":"BN.1.5.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8028092518972544"},"partiallyAliased":{"value":"BA.2.75.5.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.31233"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BN.1.5.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.111852695111845}},"branch_attrs":{"mutations":{"nuc":["C21T","T23102A"],"S":["S514T"]},"labels":{"aa":"S: S514T","spike_mutations":"S514T"}}},{"name":"BN.1.5.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7672579356275266"},"partiallyAliased":{"value":"BA.2.75.5.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.1331"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.5.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004650879511678}},"branch_attrs":{"mutations":{"nuc":["T23005A"],"S":["N481K"]},"labels":{"aa":"S: N481K","spike_mutations":"N481K"}}}]}]},{"name":"NODE_0000088","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.5.1.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.019961983165023}},"branch_attrs":{"mutations":{"nuc":["T27501C"]}},"children":[{"name":"BN.1.4","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BN.1.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.019961983165023}},"branch_attrs":{"mutations":{}}},{"name":"BN.1.4.4","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.4.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.4.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.163471948391225}},"branch_attrs":{"mutations":{"nuc":["A518-","T519-","G520-","C8782T","G16912T","G18634A"],"ORF1a":["M85-"],"ORF1b":["V1149L","V1723M"]},"labels":{"aa":"ORF1a: M85-; ORF1b: V1149L, V1723M"}}},{"name":"BN.1.4.5","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.4.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.4.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004644914819115}},"branch_attrs":{"mutations":{"nuc":["C1348T","T10057C","C10125T","G15921T","C18252T","T20583C","T23875C"],"ORF1a":["T3287I"]},"labels":{"aa":"ORF1a: T3287I"}}},{"name":"NODE_0000089","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.5.1.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.9121347947548277}},"branch_attrs":{"mutations":{"nuc":["G10364A","C14318T"],"ORF1a":["V3367I"],"ORF1b":["T284I"]},"labels":{"aa":"ORF1a: V3367I; ORF1b: T284I"}},"children":[{"name":"BN.1.4.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BN.1.4.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828588743304752}},"branch_attrs":{"mutations":{"nuc":["A10132T","T11773C","C12789T","G22344T","C23595T","T24850C","T25502C","C26110T","A28117G","G29764A"],"ORF1a":["T4175I"],"ORF3a":["I37T","P240S"],"ORF8":["D75G"],"S":["G261V","T678I"]},"labels":{"aa":"ORF1a: T4175I; ORF3a: I37T, P240S; ORF8: D75G; S: G261V, T678I","spike_mutations":"G261V, T678I"}}},{"name":"BN.1.4.2","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.4.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6647319406660825}},"branch_attrs":{"mutations":{"nuc":["C19763T","A21137G","C24899A","C26611T"],"M":["T30I"],"ORF1b":["T2099I","K2557R"],"S":["Q1113K"]},"labels":{"aa":"M: T30I; ORF1b: T2099I, K2557R; S: Q1113K","spike_mutations":"Q1113K"}}},{"name":"BN.1.4.3","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.4.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.269280732397741}},"branch_attrs":{"mutations":{"nuc":["T3106C","C3551A"],"ORF1a":["P1096T"]},"labels":{"aa":"ORF1a: P1096T"}}}]}]},{"name":"NODE_0000090","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.5.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.141462483559613}},"branch_attrs":{"mutations":{"nuc":["T11515C"]}},"children":[{"name":"BN.1.9","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-11-28"},"Nextclade_pango":{"value":"BN.1.9"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.220137598912184}},"branch_attrs":{"mutations":{"nuc":["G26416T"],"E":["V58F"]},"labels":{"aa":"E: V58F"}}},{"name":"NODE_0000091","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.2.75.5.1.2"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.2"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.518071576455121}},"branch_attrs":{"mutations":{"nuc":["A26459G"],"E":["D72G"]},"labels":{"aa":"E: D72G"}},"children":[{"name":"BN.1.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.1.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.518071576455121}},"branch_attrs":{"mutations":{}}},{"name":"BN.1.2.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7870046851946165"},"partiallyAliased":{"value":"BA.2.75.5.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.21326"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BN.1.2.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.058548113832354}},"branch_attrs":{"mutations":{"nuc":["C1915T","A18479T","C22971A"],"ORF1b":["K1671I"],"S":["T470N"]},"labels":{"aa":"ORF1b: K1671I; S: T470N","spike_mutations":"T470N"}}},{"name":"BN.1.2.2","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.2.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8243900564919926}},"branch_attrs":{"mutations":{"nuc":["C29546T"]}}},{"name":"BN.1.2.4","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.2.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.463023814562967}},"branch_attrs":{"mutations":{"nuc":["G18703C"],"ORF1b":["D1746H"]},"labels":{"aa":"ORF1b: D1746H"}}},{"name":"BN.1.2.5","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"BN.1.2.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0269496378837655}},"branch_attrs":{"mutations":{"nuc":["C3241T","C16833T","G22225A"]}}},{"name":"BN.1.2.6","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"BN.1.2.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.446361816987671}},"branch_attrs":{"mutations":{"nuc":["C15924T","G17443T"],"ORF1b":["A1326S"]},"labels":{"aa":"ORF1b: A1326S"}}},{"name":"BN.1.2.7","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-06-26"},"Nextclade_pango":{"value":"BN.1.2.7"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.97829063228134}},"branch_attrs":{"mutations":{"nuc":["C16332T","A28296G","G28375T"],"N":["N8S"],"ORF9b":["I5V","G31V"]},"labels":{"aa":"N: N8S; ORF9b: I5V, G31V"}}},{"name":"BN.1.2.8","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"BN.1.2.8"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094813448445842}},"branch_attrs":{"mutations":{"nuc":["T4744C","T23671G","C28651T"],"S":["N703K"]},"labels":{"aa":"S: N703K","spike_mutations":"N703K"}}},{"name":"NODE_0000092","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.5.1.2.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.2.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.166444895142096}},"branch_attrs":{"mutations":{"nuc":["C1471T"]}},"children":[{"name":"BN.1.2.3","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.2.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.166444895142096}},"branch_attrs":{"mutations":{}}},{"name":"FR.2","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FR.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.385155768948685}},"branch_attrs":{"mutations":{"nuc":["T6023C","T18863G","A20364G","C29272T"],"ORF1a":["Y1920H"],"ORF1b":["I1799S"]},"labels":{"aa":"ORF1a: Y1920H; ORF1b: I1799S"}}},{"name":"NODE_0000093","node_attrs":{"div":31,"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"FR.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.574466841710752}},"branch_attrs":{"mutations":{"nuc":["C337T","C1513T","A22121G","C25572T","C29370T"],"N":["T366I"],"S":["K187E"]},"labels":{"aa":"N: T366I; S: K187E","spike_mutations":"K187E"}},"children":[{"name":"FR.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-04-21"},"Nextclade_pango":{"value":"FR.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.574466841710752}},"branch_attrs":{"mutations":{}}},{"name":"FR.1.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-05-31"},"Nextclade_pango":{"value":"FR.1.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.207773793817782}},"branch_attrs":{"mutations":{"nuc":["C6040T","T14727C","A16984G","C20703T","G22131T","C22858T"],"ORF1b":["T1173A"],"S":["R190M"]},"labels":{"aa":"ORF1b: T1173A; S: R190M","spike_mutations":"R190M"}}},{"name":"FR.1.3","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"FR.1.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.766806013843514}},"branch_attrs":{"mutations":{"nuc":["C203T","C882T","C14097T","C14599T","C15017T","C25603T","T28019C","G28374A"],"N":["-31E","G34-"],"ORF1a":["A206V"],"ORF1b":["A517V"],"ORF9b":["G31R"]},"labels":{"aa":"N: -31E, G34-; ORF1a: A206V; ORF1b: A517V; ORF9b: G31R"}}},{"name":"FR.1.5","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"FR.1.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430477534290386}},"branch_attrs":{"mutations":{"nuc":["C44T","G611A","C6990T","T8719A","C11344T","T12477C"],"ORF1a":["V116M","S2242F","M4071T"]},"labels":{"aa":"ORF1a: V116M, S2242F, M4071T"}}},{"name":"NODE_0000094","node_attrs":{"div":35,"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"FR.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-6.207773793817782}},"branch_attrs":{"mutations":{"nuc":["C1142T","T2372C","C7318T","T14961C"],"ORF1a":["L293F"]},"labels":{"aa":"ORF1a: L293F"}},"children":[{"name":"FR.1.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-05-31"},"Nextclade_pango":{"value":"FR.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.460593611887955}},"branch_attrs":{"mutations":{"nuc":["A4T","C21807A"],"S":["P82H"]},"labels":{"aa":"S: P82H","spike_mutations":"P82H"}}},{"name":"FR.1.4","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.2.3.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"FR.1.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.953517603860297}},"branch_attrs":{"mutations":{"nuc":["A3715G","C15960T"]}}}]}]}]}]}]},{"name":"NODE_0000095","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.2.75.5.1.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.599685987044817}},"branch_attrs":{"mutations":{"nuc":["G11146T","C26078T"],"ORF1a":["M3627I"],"ORF3a":["T229I"]},"labels":{"aa":"ORF1a: M3627I; ORF3a: T229I"}},"children":[{"name":"BN.1.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BN.1.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.599685987044817}},"branch_attrs":{"mutations":{}}},{"name":"internal_T4435C","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.5.1.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.403375168536403}},"branch_attrs":{"mutations":{"nuc":["T4435C"]}},"children":[{"name":"BN.1.3.3","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"BN.1.3.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.582606470760753}},"branch_attrs":{"mutations":{"nuc":["T12871C","G22001C","G28090-","T28091-","T28092-","C28093-","T28094-","A28095-"],"ORF8":["G66-","S67-","K68E"],"S":["E147Q"]},"labels":{"aa":"ORF8: G66-, S67-, K68E; S: E147Q","spike_mutations":"E147Q"}}},{"name":"BN.1.3.4","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8240038551994171"},"partiallyAliased":{"value":"BA.2.75.5.1.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.08629"},"designation_date":{"value":"2022-12-24"},"Nextclade_pango":{"value":"BN.1.3.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.257520153839741}},"branch_attrs":{"mutations":{"nuc":["C44T","T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"internal_1ee3","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.75.5.1.3.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.3.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.7856532456310448}},"branch_attrs":{"mutations":{"nuc":["C3787T","T10721C"],"ORF1a":["F3486L"]},"labels":{"aa":"ORF1a: F3486L"}},"children":[{"name":"BN.1.3.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BN.1.3.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7856532456310448}},"branch_attrs":{"mutations":{}}},{"name":"DS.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.1015496354989318"},"partiallyAliased":{"value":"BA.2.75.5.1.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.16291"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"DS.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.840795611219147}},"branch_attrs":{"mutations":{"nuc":["T7174C","G22770A","T23019C"],"S":["R403K","F486S"]},"labels":{"aa":"S: R403K, F486S","spike_mutations":"R403K, F486S"}}},{"name":"DS.2","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"DS.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.492784261708492}},"branch_attrs":{"mutations":{"nuc":["C18115T","C23277T","C26151T","C29627T"],"ORF1b":["H1550Y"],"S":["T572I"]},"labels":{"aa":"ORF1b: H1550Y; S: T572I","spike_mutations":"T572I"}}},{"name":"DS.3","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"DS.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.259027551067668}},"branch_attrs":{"mutations":{"nuc":["C25521T","G26153T"],"ORF3a":["G254V"]},"labels":{"aa":"ORF3a: G254V"}}}]}]},{"name":"internal_C593T","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.5.1.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.584121910299438}},"branch_attrs":{"mutations":{"nuc":["C593T"],"ORF1a":["H110Y"]},"labels":{"aa":"ORF1a: H110Y"}},"children":[{"name":"BN.1.3.10","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-03-30"},"Nextclade_pango":{"value":"BN.1.3.10"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363555197720019}},"branch_attrs":{"mutations":{"nuc":["A6018G","C13608T"],"ORF1a":["Q1918R"]},"labels":{"aa":"ORF1a: Q1918R"}}},{"name":"BN.1.3.12","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"BN.1.3.12"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.164120320380393}},"branch_attrs":{"mutations":{"nuc":["C14358T","T22672C"]}}},{"name":"BN.1.3.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8240038551994171"},"partiallyAliased":{"value":"BA.2.75.5.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.08629"},"designation_date":{"value":"2022-12-21"},"Nextclade_pango":{"value":"BN.1.3.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.311159888799827}},"branch_attrs":{"mutations":{"nuc":["T18815G","T22896C"],"ORF1b":["L1783R"],"S":["V445A"]},"labels":{"aa":"ORF1b: L1783R; S: V445A","spike_mutations":"V445A"}}},{"name":"BN.1.3.9","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-03-23"},"Nextclade_pango":{"value":"BN.1.3.9"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.716006561730037}},"branch_attrs":{"mutations":{"nuc":["G21809T"],"S":["V83F"]},"labels":{"aa":"S: V83F","spike_mutations":"V83F"}}},{"name":"internal_ab5b","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.75.5.1.3.8"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.3.8"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.24087403891323}},"branch_attrs":{"mutations":{"nuc":["G24977C"],"S":["D1139H"]},"labels":{"aa":"S: D1139H","spike_mutations":"D1139H"}},"children":[{"name":"BN.1.3.8","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.3.8"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.24087403891323}},"branch_attrs":{"mutations":{}}},{"name":"EJ.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"EJ.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.741756170290016}},"branch_attrs":{"mutations":{"nuc":["A25235G"],"S":["I1225V"]},"labels":{"aa":"S: I1225V","spike_mutations":"I1225V"}}},{"name":"EJ.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.8.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"EJ.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.202323820672832}},"branch_attrs":{"mutations":{"nuc":["C13329T"],"ORF1a":["T4355I"]},"labels":{"aa":"ORF1a: T4355I"}}},{"name":"EJ.3","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.8.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"EJ.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810837519991311}},"branch_attrs":{"mutations":{"nuc":["C2509T","C3241T","C17004T"]}}}]},{"name":"NODE_0000100","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.75.5.1.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BN.1.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-3.2546737699454793}},"branch_attrs":{"mutations":{"nuc":["C7390A"]}},"children":[{"name":"BN.1.3.11","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"BN.1.3.11"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254505702973777}},"branch_attrs":{"mutations":{"nuc":["C1968T","G3896T","T13339C","T22861C","C29167T"],"ORF1a":["T568I","V1211F"]},"labels":{"aa":"ORF1a: T568I, V1211F"}}},{"name":"BN.1.3.13","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8240038551994171"},"partiallyAliased":{"value":"BA.2.75.5.1.3.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.08629"},"designation_date":{"value":"2023-08-06"},"Nextclade_pango":{"value":"BN.1.3.13"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.446444147732477}},"branch_attrs":{"mutations":{"nuc":["C3817T","C17818T","T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"BN.1.3.5","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-02"},"Nextclade_pango":{"value":"BN.1.3.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9307272382176395}},"branch_attrs":{"mutations":{"nuc":["T27878G"],"ORF7b":["C41W"]},"labels":{"aa":"ORF7b: C41W"}}},{"name":"BN.1.3.6","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.3.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.795540971038511}},"branch_attrs":{"mutations":{"nuc":["G27043A"],"M":["R174Q"]},"labels":{"aa":"M: R174Q"}}},{"name":"BN.1.3.7","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7607395078976054"},"partiallyAliased":{"value":"BA.2.75.5.1.3.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.25339"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BN.1.3.7"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0983145436530215}},"branch_attrs":{"mutations":{"nuc":["C4551T"],"ORF1a":["T1429I"]},"labels":{"aa":"ORF1a: T1429I"}}}]}]}]}]}]},{"name":"internal_4ad3","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.2.75.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BA.2.75.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.338240678230394}},"branch_attrs":{"mutations":{"nuc":["G18583A"],"ORF1b":["V1706I"]},"labels":{"aa":"ORF1b: V1706I"}},"children":[{"name":"BA.2.75.3","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-08-21"},"Nextclade_pango":{"value":"BA.2.75.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.338240678230394}},"branch_attrs":{"mutations":{}}},{"name":"BM.3","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BM.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.802845414682853}},"branch_attrs":{"mutations":{"nuc":["C176T","C18421T"],"ORF1b":["P1652S"]},"labels":{"aa":"ORF1b: P1652S"}}},{"name":"BM.5","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.23507392625353313"},"partiallyAliased":{"value":"BA.2.75.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.15852"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BM.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.107500954336196}},"branch_attrs":{"mutations":{"nuc":["C44T","T22926C"],"S":["L455S"]},"labels":{"aa":"S: L455S","spike_mutations":"L455S"}}},{"name":"BM.6","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.23507392625353313"},"partiallyAliased":{"value":"BA.2.75.3.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.15852"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BM.6"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731336397073195}},"branch_attrs":{"mutations":{"nuc":["A4G","T5218C","A8667G","G21786T","T22926C","C27804T","C28610A"],"N":["L113I"],"ORF1a":["D2801G"],"S":["G75V","L455S"]},"labels":{"aa":"N: L113I; ORF1a: D2801G; S: G75V, L455S","spike_mutations":"G75V, L455S"}}},{"name":"NODE_0000102","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.2.75.3.2"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.2"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.998205514175768}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BM.2","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.40549463827541665"},"partiallyAliased":{"value":"BA.2.75.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.28689"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BM.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.998205514175768}},"branch_attrs":{"mutations":{}}},{"name":"BM.2.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.45732789883121727"},"partiallyAliased":{"value":"BA.2.75.3.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.26994"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BM.2.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.203708927286181}},"branch_attrs":{"mutations":{"nuc":["T2A","T3A","A4T","C2536T","C5822T","T6148G","C15951T","T22926C"],"ORF1a":["L1853F"],"S":["L455S"]},"labels":{"aa":"ORF1a: L1853F; S: L455S","spike_mutations":"L455S"}}},{"name":"NODE_0000103","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.2.75.3.2"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.2"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.405295295627868}},"branch_attrs":{"mutations":{"nuc":["T23018G"],"S":["F486V"]},"labels":{"aa":"S: F486V","spike_mutations":"F486V"}},"children":[{"name":"BM.2.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.81858"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BM.2.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.428353743070875}},"branch_attrs":{"mutations":{"nuc":["C21T","T9628C","C21928T","A29683-"]}}},{"name":"BM.2.3","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.78817"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BM.2.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.468611055682585}},"branch_attrs":{"mutations":{"nuc":["C44T","A21851C","G23018A"],"S":["K97Q","V486I"]},"labels":{"aa":"S: K97Q, V486I","spike_mutations":"K97Q, V486I"}}}]}]},{"name":"internal_8fe9","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.2.75.3.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.310172308722201}},"branch_attrs":{"mutations":{"nuc":["T23019C"],"S":["F486S"]},"labels":{"aa":"S: F486S","spike_mutations":"F486S"}},"children":[{"name":"BM.1","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.37520611252942654"},"partiallyAliased":{"value":"BA.2.75.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.35628"},"designation_date":{"value":"2022-08-30"},"Nextclade_pango":{"value":"BM.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.310172308722201}},"branch_attrs":{"mutations":{}}},{"name":"internal_1320","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.2.75.3.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.767462789648031}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BM.1.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-09-03"},"Nextclade_pango":{"value":"BM.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.767462789648031}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000106","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.2.75.3.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.5472205639171195}},"branch_attrs":{"mutations":{"nuc":["C16887T","G27798T"],"ORF7b":["A15S"]},"labels":{"aa":"ORF7b: A15S"}},"children":[{"name":"BM.1.1.2","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BM.1.1.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208156709485787}},"branch_attrs":{"mutations":{"nuc":["T145C","C635T","C1392T","T8855C","C24210T","C24378T","C24797A"],"ORF1a":["R124C","S376L","F2864L"],"S":["T883I","S939F","P1079T"]},"labels":{"aa":"ORF1a: R124C, S376L, F2864L; S: T883I, S939F, P1079T","spike_mutations":"T883I, S939F, P1079T"}}},{"name":"BM.1.1.5","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8052662235545595"},"partiallyAliased":{"value":"BA.2.75.3.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42674000000000006"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BM.1.1.5"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.2901396503051865}},"branch_attrs":{"mutations":{"nuc":["A22116G","T22917G"],"S":["N185S","L452R"]},"labels":{"aa":"S: N185S, L452R","spike_mutations":"N185S, L452R"}}}]},{"name":"internal_f6c6","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.2.75.3.1.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.847544420663045}},"branch_attrs":{"mutations":{"nuc":["G261A","T23031C"],"S":["F490S"]},"labels":{"aa":"S: F490S","spike_mutations":"F490S"}},"children":[{"name":"BM.1.1.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"BA.2.75.3.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.43724"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BM.1.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847544420663045}},"branch_attrs":{"mutations":{}}},{"name":"internal_a785","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"CJ.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.243200979450146}},"branch_attrs":{"mutations":{"nuc":["C44T","T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"CJ.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"CJ.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.243200979450146}},"branch_attrs":{"mutations":{}}},{"name":"internal_ed55","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"CJ.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.945791780883202}},"branch_attrs":{"mutations":{"nuc":["A5006G"],"ORF1a":["T1581A"]},"labels":{"aa":"ORF1a: T1581A"}},"children":[{"name":"CJ.1.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.904530682779505"},"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.87567"},"designation_date":{"value":"2022-12-14"},"Nextclade_pango":{"value":"CJ.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.263338833354805}},"branch_attrs":{"mutations":{"nuc":["T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"CJ.1.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-04-07"},"Nextclade_pango":{"value":"CJ.1.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.284399139637061}},"branch_attrs":{"mutations":{"nuc":["C8090T"],"ORF1a":["L2609F"]},"labels":{"aa":"ORF1a: L2609F"}}}]},{"name":"NODE_0000110","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"CJ.1.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.55898253007495}},"branch_attrs":{"mutations":{"nuc":["A261G","G4960A","C14790T"]}},"children":[{"name":"CJ.1.3","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-04-07"},"Nextclade_pango":{"value":"CJ.1.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.55898253007495}},"branch_attrs":{"mutations":{}}},{"name":"CJ.1.3.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"CJ.1.3.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305581591441108}},"branch_attrs":{"mutations":{"nuc":["C2197T","C4582T","G10997A","T11737C","C11962T","C14649T","C22202A"],"ORF1a":["G3578S"],"S":["R214S"]},"labels":{"aa":"ORF1a: G3578S; S: R214S","spike_mutations":"R214S"}}},{"name":"CJ.1.3.2","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"BA.2.75.3.1.1.1.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"CJ.1.3.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.677290851244616}},"branch_attrs":{"mutations":{"nuc":["T11618C","G24368C"],"ORF1a":["F3785L"],"S":["D936H"]},"labels":{"aa":"ORF1a: F3785L; S: D936H","spike_mutations":"D936H"}}}]}]}]},{"name":"NODE_0000111","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.2.75.3.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.154187025823606}},"branch_attrs":{"mutations":{"nuc":["C3130T"]}},"children":[{"name":"NODE_0000112","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.3.1.1.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1.1.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.0146061582959325}},"branch_attrs":{"mutations":{"nuc":["C15183T","C29580T"]}},"children":[{"name":"BM.1.1.3","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BM.1.1.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0146061582959325}},"branch_attrs":{"mutations":{}}},{"name":"CV.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8052662235545595"},"partiallyAliased":{"value":"BA.2.75.3.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42674000000000006"},"designation_date":{"value":"2022-10-23"},"Nextclade_pango":{"value":"CV.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.415517045890941}},"branch_attrs":{"mutations":{"nuc":["A2473T","T4914C","T6148A","T10249C","T22917G"],"ORF1a":["V1550A"],"S":["L452R"]},"labels":{"aa":"ORF1a: V1550A; S: L452R","spike_mutations":"L452R"}}},{"name":"CV.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.1.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.07323"},"designation_date":{"value":"2022-12-06"},"Nextclade_pango":{"value":"CV.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.342151936467701}},"branch_attrs":{"mutations":{"nuc":["G1806A","A16907G","T23018C"],"ORF1a":["G514E"],"ORF1b":["Y1147C"],"S":["S486P"]},"labels":{"aa":"ORF1a: G514E; ORF1b: Y1147C; S: S486P","spike_mutations":"S486P"}}}]},{"name":"NODE_0000113","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.75.3.1.1.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1.1.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.78244614683486}},"branch_attrs":{"mutations":{"nuc":["C912A","A2151C","A22629C","C23277T","G29527A"],"ORF1a":["S216Y","D629A"],"S":["K356T","T572I"]},"labels":{"aa":"ORF1a: S216Y, D629A; S: K356T, T572I","spike_mutations":"K356T, T572I"}},"children":[{"name":"BM.1.1.4","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8758711837540117"},"partiallyAliased":{"value":"BA.2.75.3.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.46466000000000013"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BM.1.1.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.78244614683486}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000114","node_attrs":{"div":29,"partiallyAliased":{"value":"BA.2.75.3.1.1.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.1.1.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.986335229753206}},"branch_attrs":{"mutations":{"nuc":["T3037C","C14805T"]}},"children":[{"name":"EP.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8758711837540117"},"partiallyAliased":{"value":"BA.2.75.3.1.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.46466000000000013"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"EP.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["C7735T","T19896C","C25002T","C27513T","G28907A"],"N":["G212S"],"S":["S1147L"]},"labels":{"aa":"N: G212S; S: S1147L","spike_mutations":"S1147L"}}},{"name":"NODE_0000115","node_attrs":{"div":35,"partiallyAliased":{"value":"BA.2.75.3.1.1.4.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"EP.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-8.834842814200968}},"branch_attrs":{"mutations":{"nuc":["C1102T","C7945T","A9343G","G20683A","T22917G","C29200T"],"ORF1b":["V2406I"],"S":["L452R"]},"labels":{"aa":"ORF1b: V2406I; S: L452R","spike_mutations":"L452R"}},"children":[{"name":"EP.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0382177972683748"},"partiallyAliased":{"value":"BA.2.75.3.1.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42369999999999997"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"EP.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-8.834842814200968}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000116","node_attrs":{"div":39,"partiallyAliased":{"value":"BA.2.75.3.1.1.4.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"EP.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-6.508708583035122}},"branch_attrs":{"mutations":{"nuc":["C12623T","C17010T","C27855T","A27947T"],"ORF1a":["P4120S"],"ORF8":["Q18H"]},"labels":{"aa":"ORF1a: P4120S; ORF8: Q18H"}},"children":[{"name":"EP.1.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0382177972683748"},"partiallyAliased":{"value":"BA.2.75.3.1.1.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42369999999999997"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"EP.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.508708583035122}},"branch_attrs":{"mutations":{}}},{"name":"EP.1.1.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0382177972683748"},"partiallyAliased":{"value":"BA.2.75.3.1.1.4.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.42369999999999997"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"EP.1.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["G6802A","C16887T","T18231C","C21627A","C21789T","A24578G","C25006T","C28603T","G29628A"],"S":["T22N","T76I","T1006A"]},"labels":{"aa":"S: T22N, T76I, T1006A","spike_mutations":"T22N, T76I, T1006A"}}}]}]}]}]}]}]}]},{"name":"internal_9cd1","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.2.75.3.4"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.4"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.391801037821789}},"branch_attrs":{"mutations":{"nuc":["C3857A"],"ORF1a":["Q1198K"]},"labels":{"aa":"ORF1a: Q1198K"}},"children":[{"name":"BM.4","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.19126716215613518"},"partiallyAliased":{"value":"BA.2.75.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.17547"},"designation_date":{"value":"2022-09-07"},"Nextclade_pango":{"value":"BM.4"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.391801037821789}},"branch_attrs":{"mutations":{}}},{"name":"internal_9ced","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.2.75.3.4.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.4.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.444516469067663}},"branch_attrs":{"mutations":{"nuc":["T23019C"],"S":["F486S"]},"labels":{"aa":"S: F486S","spike_mutations":"F486S"}},"children":[{"name":"BM.4.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.37520611252942654"},"partiallyAliased":{"value":"BA.2.75.3.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.35628"},"designation_date":{"value":"2022-09-07"},"Nextclade_pango":{"value":"BM.4.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.444516469067663}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000119","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.2.75.3.4.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.4.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-4.588232651615727}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BM.4.1.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-09-19"},"Nextclade_pango":{"value":"BM.4.1.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.588232651615727}},"branch_attrs":{"mutations":{}}},{"name":"CH.2","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"CH.2"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.360369982157331}},"branch_attrs":{"mutations":{"nuc":["G22111T"],"S":["Q183H"]},"labels":{"aa":"S: Q183H","spike_mutations":"Q183H"}}},{"name":"internal_635f","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.2.75.3.4.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"BM.4.1.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.224388121060273}},"branch_attrs":{"mutations":{"nuc":["A20741G"],"ORF1b":["Q2425R"]},"labels":{"aa":"ORF1b: Q2425R"}},"children":[{"name":"internal_e4db","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.3"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"CH.3"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.944998509017094}},"branch_attrs":{"mutations":{"nuc":["T13090C","T14565A","T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"CH.3","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.07323"},"designation_date":{"value":"2022-12-01"},"Nextclade_pango":{"value":"CH.3"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.944998509017094}},"branch_attrs":{"mutations":{}}},{"name":"CH.3.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6700845939923116"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"1.0219999999999998"},"designation_date":{"value":"2022-12-15"},"Nextclade_pango":{"value":"CH.3.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.407005447302874}},"branch_attrs":{"mutations":{"nuc":["T23042C"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}}}]},{"name":"internal_b60a","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1"},"clade_membership":{"value":"22D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22D (BA.2.75)"},"Nextclade_pango":{"value":"CH.1"},"clade_nextstrain":{"value":"22D"},"placement_prior":{"value":-5.457911069511304}},"branch_attrs":{"mutations":{"nuc":["A22893C"],"S":["K444T"]},"labels":{"aa":"S: K444T","spike_mutations":"K444T"}},"children":[{"name":"CH.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.7375915034594059"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22D (BA.2.75)"},"ace2_binding":{"value":"0.36891999999999997"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"CH.1"},"clade_nextstrain":{"value":"22D"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.457911069511304}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000123","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.098724754627773}},"branch_attrs":{"mutations":{"nuc":["T22917G"],"S":["L452R"]},"labels":{"aa":"S: L452R","clade":"23C","spike_mutations":"L452R"}},"children":[{"name":"CH.1.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"CH.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.098724754627773}},"branch_attrs":{"mutations":{}}},{"name":"CH.1.1.27","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"CH.1.1.27"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.52627085533862}},"branch_attrs":{"mutations":{"nuc":["C1878T"],"ORF1a":["S538L"]},"labels":{"aa":"ORF1a: S538L"}}},{"name":"CH.1.1.7","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"CH.1.1.7"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.075687864177597}},"branch_attrs":{"mutations":{"nuc":["T693G"],"ORF1a":["F143C"]},"labels":{"aa":"ORF1a: F143C"}}},{"name":"NODE_0000124","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.729847706524377}},"branch_attrs":{"mutations":{"nuc":["C11674T"]}},"children":[{"name":"CH.1.1.18","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"CH.1.1.18"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.677321067974104}},"branch_attrs":{"mutations":{"nuc":["A2015G","C3486T","A9154G","A22122C","C23086T","C25710T","C28737T"],"N":["A155V"],"ORF1a":["M584V","A1074V"],"S":["K187T"]},"labels":{"aa":"N: A155V; ORF1a: M584V, A1074V; S: K187T","spike_mutations":"K187T"}}},{"name":"CH.1.1.21","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":18},"immune_escape":{"value":"0.9143307657620676"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":1},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.08511000000000003"},"designation_date":{"value":"2023-03-29"},"Nextclade_pango":{"value":"CH.1.1.21"},"clade_nextstrain":{"value":"23C"},"qc.frameShifts.frameShifts":{"value":"ORF7a:59-122"},"totalAminoacidSubstitutions":{"value":69},"frameShifts":{"value":"ORF7a:59-122"},"qc.overallScore":{"value":56.25},"placement_prior":{"value":-5.430477534290386}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","C17118T","A17940T","A23003T","T27565-","A27748-"],"ORF1a":["G82-","H83-","V84-","M85-","V86-"],"ORF7a":["C58-"],"S":["N481Y"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-; ORF7a: C58-; S: N481Y","spike_mutations":"N481Y"}}}]},{"name":"NODE_0000125","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.3"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.3"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.650541166452543}},"branch_attrs":{"mutations":{"nuc":["T22325C"],"S":["S255P"]},"labels":{"aa":"S: S255P","spike_mutations":"S255P"}},"children":[{"name":"CH.1.1.3","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2022-12-15"},"Nextclade_pango":{"value":"CH.1.1.3"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.650541166452543}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000126","node_attrs":{"div":31,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.3.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"GQ.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.5096245483665856}},"branch_attrs":{"mutations":{"nuc":["C4900A","G18025T","A21979G","T23018C","C24358T"],"ORF1a":["H1545Q"],"ORF1b":["V1520L"],"S":["S486P"]},"labels":{"aa":"ORF1a: H1545Q; ORF1b: V1520L; S: S486P","spike_mutations":"S486P"}},"children":[{"name":"GQ.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.9334899999999999"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GQ.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5096245483665856}},"branch_attrs":{"mutations":{}}},{"name":"GQ.1.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.9334899999999999"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"GQ.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36362174907267}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T6634C","T10029C","C14183T","G22200A","C27532A","C28831A"],"ORF1a":["G82-","H83-","V84-","M85V","I3255T"],"ORF1b":["T239I"],"ORF7a":["H47N"],"S":["G213E"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85V, I3255T; ORF1b: T239I; ORF7a: H47N; S: G213E","spike_mutations":"G213E"}}}]}]},{"name":"NODE_0000127","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-3.4614234187278345}},"branch_attrs":{"mutations":{"nuc":["T27576C"]}},"children":[{"name":"CH.1.1.10","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"CH.1.1.10"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.261359926568987}},"branch_attrs":{"mutations":{"nuc":["G1589A","C9430T"],"ORF1a":["G442S"]},"labels":{"aa":"ORF1a: G442S"}}},{"name":"CH.1.1.15","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-09"},"Nextclade_pango":{"value":"CH.1.1.15"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.461737662781622}},"branch_attrs":{"mutations":{"nuc":["C9940T","A22108C"],"S":["K182N"]},"labels":{"aa":"S: K182N","spike_mutations":"K182N"}}},{"name":"CH.1.1.2","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2022-11-29"},"Nextclade_pango":{"value":"CH.1.1.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7822519133786496}},"branch_attrs":{"mutations":{"nuc":["C44T","A5802G","G7145A","C24210T"],"ORF1a":["Y1846C","G2294S"],"S":["T883I"]},"labels":{"aa":"ORF1a: Y1846C, G2294S; S: T883I","spike_mutations":"T883I"}}},{"name":"CH.1.1.24","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"CH.1.1.24"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.093117260372627}},"branch_attrs":{"mutations":{"nuc":["T931C","T6676C"]}}},{"name":"CH.1.1.25","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"CH.1.1.25"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.219698717755171}},"branch_attrs":{"mutations":{"nuc":["C1254T","C12854T"],"ORF1a":["S330L","P4197S"]},"labels":{"aa":"ORF1a: S330L, P4197S"}}},{"name":"CH.1.1.26","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"CH.1.1.26"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.319428399473628}},"branch_attrs":{"mutations":{"nuc":["C29296T","T29793C"]}}},{"name":"CH.1.1.29","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"CH.1.1.29"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["C1376T","G23401T"],"ORF1a":["P371S"],"S":["Q613H"]},"labels":{"aa":"ORF1a: P371S; S: Q613H","spike_mutations":"Q613H"}}},{"name":"CH.1.1.4","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"CH.1.1.4"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.661624937077714}},"branch_attrs":{"mutations":{"nuc":["A23604G","T23773C"],"S":["H681R"]},"labels":{"aa":"S: H681R","spike_mutations":"H681R"}}}]},{"name":"NODE_0000128","node_attrs":{"div":29,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.0684416589506025}},"branch_attrs":{"mutations":{"nuc":["C1545T","A19886G","A22115G","T24991A"],"ORF1a":["A427V"],"ORF1b":["K2140R"],"S":["N185D"]},"labels":{"aa":"ORF1a: A427V; ORF1b: K2140R; S: N185D","spike_mutations":"N185D"}},"children":[{"name":"CH.1.1.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2022-11-29"},"Nextclade_pango":{"value":"CH.1.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0684416589506025}},"branch_attrs":{"mutations":{}}},{"name":"DV.4","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"DV.4"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.71742018112936}},"branch_attrs":{"mutations":{"nuc":["C44T","A23702G"],"S":["I714V"]},"labels":{"aa":"S: I714V","spike_mutations":"I714V"}}},{"name":"internal_ddb1","node_attrs":{"div":31,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-3.631075743951731}},"branch_attrs":{"mutations":{"nuc":["T4402A","C25721T"],"ORF3a":["A110V"]},"labels":{"aa":"ORF3a: A110V"}},"children":[{"name":"DV.2","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"DV.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.87969310883419}},"branch_attrs":{"mutations":{"nuc":["A23267G"],"S":["I569V"]},"labels":{"aa":"S: I569V","spike_mutations":"I569V"}}},{"name":"DV.5","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-20"},"Nextclade_pango":{"value":"DV.5"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.859800436282966}},"branch_attrs":{"mutations":{"nuc":["C335T","G23401T"],"ORF1a":["R24C"],"S":["Q613H"]},"labels":{"aa":"ORF1a: R24C; S: Q613H","spike_mutations":"Q613H"}}},{"name":"DV.8","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"DV.8"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.595991070372123}},"branch_attrs":{"mutations":{"nuc":["C8299T","C19602T","G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}}},{"name":"internal_e719","node_attrs":{"div":32,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.954678298851471}},"branch_attrs":{"mutations":{"nuc":["C22088T"],"S":["L176F"]},"labels":{"aa":"S: L176F","spike_mutations":"L176F"}},"children":[{"name":"DV.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-14"},"Nextclade_pango":{"value":"DV.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.954678298851471}},"branch_attrs":{"mutations":{}}},{"name":"DV.1.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"DV.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.007396399080179}},"branch_attrs":{"mutations":{"nuc":["G23401T","C29067T"],"N":["T265I"],"S":["Q613H"]},"labels":{"aa":"N: T265I; S: Q613H","spike_mutations":"Q613H"}}}]},{"name":"internal_fbb9","node_attrs":{"div":33,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.3"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.3"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.866330606498299}},"branch_attrs":{"mutations":{"nuc":["G1394A","T13560C"],"ORF1a":["E377K"]},"labels":{"aa":"ORF1a: E377K"}},"children":[{"name":"DV.3","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"DV.3"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.866330606498299}},"branch_attrs":{"mutations":{}}},{"name":"DV.3.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-02-24"},"Nextclade_pango":{"value":"DV.3.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978313197513926}},"branch_attrs":{"mutations":{"nuc":["G15982A"],"ORF1b":["V839I"]},"labels":{"aa":"ORF1b: V839I"}}}]},{"name":"internal_56d62e69","node_attrs":{"div":32,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.6"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.6"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-3.867360779804928}},"branch_attrs":{"mutations":{"nuc":["T15591C"]}},"children":[{"name":"DV.6","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"DV.6"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.867360779804928}},"branch_attrs":{"mutations":{}}},{"name":"internal_656b8ca4","node_attrs":{"div":33,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.6"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.6"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-6.3833528651364535}},"branch_attrs":{"mutations":{"nuc":["G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}},"children":[{"name":"DV.6.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"DV.6.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.194460131035028}},"branch_attrs":{"mutations":{"nuc":["C12073T"]}}},{"name":"DV.6.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"DV.6.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.585526233294406}},"branch_attrs":{"mutations":{"nuc":["C6628T","C18032T"],"ORF1b":["T1522I"]},"labels":{"aa":"ORF1b: T1522I"}}}]}]},{"name":"internal_662f88a7","node_attrs":{"div":34,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.606579085457057}},"branch_attrs":{"mutations":{"nuc":["C10908T","C24134A","T25959C"],"ORF1a":["A3548V"],"S":["L858I"]},"labels":{"aa":"ORF1a: A3548V; S: L858I","spike_mutations":"L858I"}},"children":[{"name":"DV.7","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"DV.7"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606579085457057}},"branch_attrs":{"mutations":{}}},{"name":"internal_19c380a1","node_attrs":{"div":38,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.047387588348803}},"branch_attrs":{"mutations":{"nuc":["C2227T","T4036A","C15026T","G25606A"],"ORF1b":["A520V"],"ORF3a":["A72T"]},"labels":{"aa":"ORF1b: A520V; ORF3a: A72T"}},"children":[{"name":"DV.7.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"DV.7.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.7314641992338045}},"branch_attrs":{"mutations":{"nuc":["C703T"]}}},{"name":"NODE_0000136","node_attrs":{"div":40,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.291024203155805}},"branch_attrs":{"mutations":{"nuc":["G22927T","T22928C"],"S":["L455F","F456L"]},"labels":{"aa":"S: L455F, F456L","spike_mutations":"L455F, F456L"}},"children":[{"name":"DV.7.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-06-26"},"Nextclade_pango":{"value":"DV.7.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.052407873536212}},"branch_attrs":{"mutations":{"nuc":["C25959T"]}}},{"name":"DV.7.1.8","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"DV.7.1.8"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":81},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509701249326239}},"branch_attrs":{"mutations":{"nuc":["A8010G","C12119T","C24444T"],"ORF1a":["D2582G","P3952S"],"S":["T961M"]},"labels":{"aa":"ORF1a: D2582G, P3952S; S: T961M","spike_mutations":"T961M"}}},{"name":"NODE_0000137","node_attrs":{"div":41,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.187549380542668}},"branch_attrs":{"mutations":{"nuc":["C27382T"],"ORF6":["L61F"]},"labels":{"aa":"ORF6: L61F"}},"children":[{"name":"DV.7.1.6","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"DV.7.1.6"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509736794437754}},"branch_attrs":{"mutations":{"nuc":["G21724A","C22109A","T28007C","G28922T","G29830A"],"N":["A217S"],"S":["Q183K"]},"labels":{"aa":"N: A217S; S: Q183K","spike_mutations":"Q183K"}}},{"name":"DV.7.1.7","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"DV.7.1.7"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":81},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.06262596947402}},"branch_attrs":{"mutations":{"nuc":["C44T","C2262A","C3587T","T5122C","G21830A","C29095T"],"ORF1a":["T666N","H1108Y"],"S":["V90I"]},"labels":{"aa":"ORF1a: T666N, H1108Y; S: V90I","spike_mutations":"V90I"}}}]},{"name":"internal_38689e19","node_attrs":{"div":43,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.2"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7.1.2"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.872978172470629}},"branch_attrs":{"mutations":{"nuc":["C12750T","A24373G","A29558G"],"ORF1a":["A4162V"]},"labels":{"aa":"ORF1a: A4162V"}},"children":[{"name":"DV.7.1.2","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-09-11"},"Nextclade_pango":{"value":"DV.7.1.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.872978172470629}},"branch_attrs":{"mutations":{}}},{"name":"internal_47b5e065","node_attrs":{"div":44,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.2"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7.1.2"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.731657272420985}},"branch_attrs":{"mutations":{"nuc":["C7002T"],"ORF1a":["S2246L"]},"labels":{"aa":"ORF1a: S2246L"}},"children":[{"name":"JV.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.1150246801488448"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.9432199999999997"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JV.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":81},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.407066005595962}},"branch_attrs":{"mutations":{"nuc":["C44T","G23015C"],"S":["G485R"]},"labels":{"aa":"S: G485R","spike_mutations":"G485R"}}},{"name":"JV.2","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JV.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":82},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606579085457057}},"branch_attrs":{"mutations":{"nuc":["C1063T","C2334T","G23876A","G29032A"],"ORF1a":["A690V"],"S":["V772I"]},"labels":{"aa":"ORF1a: A690V; S: V772I","spike_mutations":"V772I"}}}]}]},{"name":"NODE_0000140","node_attrs":{"div":41,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.5"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7.1.5"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.601329066977138}},"branch_attrs":{"mutations":{"nuc":["A28676G"],"N":["T135A"]},"labels":{"aa":"N: T135A"}},"children":[{"name":"DV.7.1.5","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"DV.7.1.5"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.601329066977138}},"branch_attrs":{"mutations":{}}},{"name":"KG.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"KG.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36360999014139}},"branch_attrs":{"mutations":{"nuc":["C15240T","G22021T"],"S":["M153I"]},"labels":{"aa":"S: M153I","spike_mutations":"M153I"}}},{"name":"KG.2","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.1150246801488448"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.9432199999999997"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"KG.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":1.5625},"placement_prior":{"value":-5.305709998024415}},"branch_attrs":{"mutations":{"nuc":["C44T","G564A","T5356A","C10336T","C21707T","C22353A","G23015C","C26907T"],"ORF1a":["S100N","D1697E"],"S":["H49Y","A264D","G485R"]},"labels":{"aa":"ORF1a: S100N, D1697E; S: H49Y, A264D, G485R","spike_mutations":"H49Y, A264D, G485R"}}}]},{"name":"NODE_0000141","node_attrs":{"div":41,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"DV.7.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.490701369792244}},"branch_attrs":{"mutations":{"nuc":["A10323G"],"ORF1a":["K3353R"]},"labels":{"aa":"ORF1a: K3353R"}},"children":[{"name":"DV.7.1.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-09-11"},"Nextclade_pango":{"value":"DV.7.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.796594618505592}},"branch_attrs":{"mutations":{"nuc":["A23598G"],"S":["K679R"]},"labels":{"aa":"S: K679R","spike_mutations":"K679R"}}},{"name":"DV.7.1.3","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"DV.7.1.3"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6606103432465}},"branch_attrs":{"mutations":{"nuc":["C9967T","G22346T"],"S":["A262S"]},"labels":{"aa":"S: A262S","spike_mutations":"A262S"}}},{"name":"DV.7.1.4","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"DV.7.1.4"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.072338965873426}},"branch_attrs":{"mutations":{"nuc":["G28001T"]}}},{"name":"DV.7.1.9","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.1.7.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"DV.7.1.9"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.412816979536553}},"branch_attrs":{"mutations":{"nuc":["C44T","G25116A"],"S":["R1185H"]},"labels":{"aa":"S: R1185H","spike_mutations":"R1185H"}}}]}]}]}]}]}]},{"name":"NODE_0000142","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.0498141252763125}},"branch_attrs":{"mutations":{"nuc":["C21811T"]}},"children":[{"name":"CH.1.1.28","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"CH.1.1.28"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.472045070202955}},"branch_attrs":{"mutations":{"nuc":["C5812T","G16741T","T27832G"],"ORF1b":["V1092F"],"ORF7b":["I26S"]},"labels":{"aa":"ORF1b: V1092F; ORF7b: I26S"}}},{"name":"CH.1.1.32","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-09-24"},"Nextclade_pango":{"value":"CH.1.1.32"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810852865563699}},"branch_attrs":{"mutations":{"nuc":["C2455T","A3186C","C14491T","C24134A","C28512A"],"N":["P80Q"],"ORF1a":["E974A"],"ORF9b":["Q77K"],"S":["L858I"]},"labels":{"aa":"N: P80Q; ORF1a: E974A; ORF9b: Q77K; S: L858I","spike_mutations":"L858I"}}},{"name":"NODE_0000143","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.818738730265822}},"branch_attrs":{"mutations":{"nuc":["G13441A","C28093T"],"ORF8":["S67F"]},"labels":{"aa":"ORF8: S67F"}},"children":[{"name":"CH.1.1.13","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"CH.1.1.13"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.746061067265164}},"branch_attrs":{"mutations":{"nuc":["C2485T","C25904T"],"ORF3a":["S171L"]},"labels":{"aa":"ORF3a: S171L"}}},{"name":"CH.1.1.14","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"CH.1.1.14"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.818117424369369}},"branch_attrs":{"mutations":{"nuc":["C29358T"],"N":["T362I"]},"labels":{"aa":"N: T362I"}}},{"name":"CH.1.1.9","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"CH.1.1.9"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.724175986111724}},"branch_attrs":{"mutations":{"nuc":["A25256G","T28861C"],"S":["I1232V"]},"labels":{"aa":"S: I1232V","spike_mutations":"I1232V"}}}]},{"name":"NODE_0000144","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.11"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.11"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.24920772501993}},"branch_attrs":{"mutations":{"nuc":["G3791A"],"ORF1a":["A1176T"]},"labels":{"aa":"ORF1a: A1176T"}},"children":[{"name":"CH.1.1.11","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"CH.1.1.11"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.24920772501993}},"branch_attrs":{"mutations":{}}},{"name":"GP.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GP.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8840282243512405}},"branch_attrs":{"mutations":{"nuc":["G21718T","C27476T"],"ORF7a":["T28I"],"S":["Q52H"]},"labels":{"aa":"ORF7a: T28I; S: Q52H","spike_mutations":"Q52H"}}},{"name":"GP.2","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.11.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GP.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.278639698626123}},"branch_attrs":{"mutations":{"nuc":["T13450C","C27323T"],"ORF6":["S41F"]},"labels":{"aa":"ORF6: S41F"}}},{"name":"GP.3","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.11.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GP.3"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.664713548136278}},"branch_attrs":{"mutations":{"nuc":["T5218C","A16878G","A26519G","C29236T"]}}}]},{"name":"NODE_0000145","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-3.2736211657434646}},"branch_attrs":{"mutations":{"nuc":["C193T"]}},"children":[{"name":"CH.1.1.16","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-20"},"Nextclade_pango":{"value":"CH.1.1.16"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.628989352279425}},"branch_attrs":{"mutations":{"nuc":["C11620T","G23401T","C25469T"],"ORF3a":["S26L"],"S":["Q613H"]},"labels":{"aa":"ORF3a: S26L; S: Q613H","spike_mutations":"Q613H"}}},{"name":"CH.1.1.20","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9207485992073144"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"1.05667"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"CH.1.1.20"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731336397073195}},"branch_attrs":{"mutations":{"nuc":["C21T","G2357A","C22458T","G22770A","A25056G","C27389T","A29567G"],"ORF1a":["A698T"],"S":["T299I","R403K","D1165G"]},"labels":{"aa":"ORF1a: A698T; S: T299I, R403K, D1165G","spike_mutations":"T299I, R403K, D1165G"}}},{"name":"CH.1.1.22","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-29"},"Nextclade_pango":{"value":"CH.1.1.22"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731336397073195}},"branch_attrs":{"mutations":{"nuc":["C8814T","T17349C","A23598G","C24466T","C26885T","A27269T"],"ORF1a":["A2850V"],"ORF6":["K23I"],"S":["K679R"]},"labels":{"aa":"ORF1a: A2850V; ORF6: K23I; S: K679R","spike_mutations":"K679R"}}},{"name":"CH.1.1.23","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-04-11"},"Nextclade_pango":{"value":"CH.1.1.23"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.009162746250209}},"branch_attrs":{"mutations":{"nuc":["C22530A","A24772G"],"S":["T323K"]},"labels":{"aa":"S: T323K","spike_mutations":"T323K"}}},{"name":"CH.1.1.30","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"CH.1.1.30"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9494681867627905}},"branch_attrs":{"mutations":{"nuc":["T9167C","C24337T"],"ORF1a":["Y2968H"]},"labels":{"aa":"ORF1a: Y2968H"}}},{"name":"CH.1.1.5","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-13"},"Nextclade_pango":{"value":"CH.1.1.5"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.345463051089097}},"branch_attrs":{"mutations":{"nuc":["C12781T","T17112C","C25702T"],"ORF3a":["P104S"]},"labels":{"aa":"ORF3a: P104S"}}},{"name":"CH.1.1.6","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"CH.1.1.6"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.402534009122686}},"branch_attrs":{"mutations":{"nuc":["A1278G","C5622T","C23757T"],"ORF1a":["K338R","P1786L"],"S":["T732I"]},"labels":{"aa":"ORF1a: K338R, P1786L; S: T732I","spike_mutations":"T732I"}}},{"name":"CH.1.1.8","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"CH.1.1.8"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4465332218272255}},"branch_attrs":{"mutations":{"nuc":["C12412T","C24099T"],"S":["A846V"]},"labels":{"aa":"S: A846V","spike_mutations":"A846V"}}},{"name":"NODE_0000146","node_attrs":{"div":30,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.12"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.12"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.69899115243939}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","C1722T","C6016T","C24134A"],"ORF1a":["G82-","H83-","V84-","M85V","A486V"],"S":["L858I"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85V, A486V; S: L858I","spike_mutations":"L858I"}},"children":[{"name":"CH.1.1.12","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"CH.1.1.12"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.69899115243939}},"branch_attrs":{"mutations":{}}},{"name":"FS.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.12.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-04-21"},"Nextclade_pango":{"value":"FS.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.772083836082066}},"branch_attrs":{"mutations":{"nuc":["A12162G"],"ORF1a":["Q3966R"]},"labels":{"aa":"ORF1a: Q3966R"}}}]},{"name":"NODE_0000147","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.19"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.19"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.5718225771418295}},"branch_attrs":{"mutations":{"nuc":["C2773T"]}},"children":[{"name":"CH.1.1.19","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"CH.1.1.19"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5718225771418295}},"branch_attrs":{"mutations":{}}},{"name":"FJ.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.19.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-29"},"Nextclade_pango":{"value":"FJ.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8106398454528785}},"branch_attrs":{"mutations":{"nuc":["C3876T","A27277G"],"ORF1a":["A1204V"],"ORF6":["I26V"]},"labels":{"aa":"ORF1a: A1204V; ORF6: I26V"}}}]},{"name":"NODE_0000148","node_attrs":{"div":33,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.31"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.31"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-8.834842814200968}},"branch_attrs":{"mutations":{"nuc":["A2043G","C4754T","C8637T","G16537A","T16599C","A24727G"],"ORF1a":["N593S","P1497S","T2791I"],"ORF1b":["D1024N"]},"labels":{"aa":"ORF1a: N593S, P1497S, T2791I; ORF1b: D1024N"}},"children":[{"name":"CH.1.1.31","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-09-24"},"Nextclade_pango":{"value":"CH.1.1.31"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-8.834842814200968}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000149","node_attrs":{"div":38,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.31.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"JP.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-8.834842814200968}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","G7059A","G21668A","G22104A","G22770A","C25587A","C27526-","C27527-","A27528-","T27529-","T27530-","T27531-","C27532-","A27533-","T27534-","C27535-","C27536-","T27537-","C27538-","T27539-","A27540-","G27541-","C27542-","T27543-","G27544-","A27545-","T27546-","A27547-","A27548-","C27549-","A27550-","A27551-","A27552-","T27553-","T27554-","T27555-","G27556-","C27557-","A27558-","C27559-","T27560-","G27561-","A27562-","C27563-","T27564-","T27565-","G27566-","C27567-","T27568-","T27569-","T27570-","A27571-","G27572-","C27573-","A27574-","C27575-"],"ORF1a":["G82-","H83-","V84-","M85-","V86-","G2265D"],"ORF7a":["P45-","F46-","H47-","P48-","L49-","A50-","D51-","N52-","K53-","F54-","A55-","L56-","T57-","C58-","F59-","S60-","T61-"],"S":["V36I","G181E","R403K"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-, G2265D; ORF7a: P45-, F46-, H47-, P48-, L49-, A50-, D51-, N52-, K53-, F54-, A55-, L56-, T57-, C58-, F59-, S60-, T61-; S: V36I, G181E, R403K","spike_mutations":"V36I, G181E, R403K"}},"children":[{"name":"JP.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":34},"immune_escape":{"value":"0.9207485992073144"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.31.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"1.05667"},"designation_date":{"value":"2023-09-24"},"Nextclade_pango":{"value":"JP.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":76},"frameShifts":{"value":"ORF7a:62-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-8.834842814200968}},"branch_attrs":{"mutations":{}}},{"name":"JP.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":34},"immune_escape":{"value":"0.9207485992073144"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.31.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"1.05667"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"JP.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":79},"frameShifts":{"value":"ORF7a:62-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.60648321847616}},"branch_attrs":{"mutations":{"nuc":["C4890T","C14340T","G15780A","C19983T","G25218T","C26212T","T27383A"],"ORF1a":["T1542I"],"ORF3a":["P274S"],"ORF6":["L61H"],"S":["G1219V"]},"labels":{"aa":"ORF1a: T1542I; ORF3a: P274S; ORF6: L61H; S: G1219V","spike_mutations":"G1219V"}}}]}]}]},{"name":"internal_6111d1af","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"CH.1.1.17"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.04116667509002}},"branch_attrs":{"mutations":{"nuc":["A27156G","C29555T"],"M":["S212G"]},"labels":{"aa":"M: S212G"}},"children":[{"name":"CH.1.1.17","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-20"},"Nextclade_pango":{"value":"CH.1.1.17"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.04116667509002}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000151","node_attrs":{"div":32,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-6.286750092278714}},"branch_attrs":{"mutations":{"nuc":["C11750T","C18657T","A22206G","G23401T"],"ORF1a":["L3829F"],"S":["D215G","Q613H"]},"labels":{"aa":"ORF1a: L3829F; S: D215G, Q613H","spike_mutations":"D215G, Q613H"}},"children":[{"name":"FK.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-03-31"},"Nextclade_pango":{"value":"FK.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.286750092278714}},"branch_attrs":{"mutations":{}}},{"name":"internal_6bb31b02","node_attrs":{"div":35,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.2"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1.2"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.4682505348582815}},"branch_attrs":{"mutations":{"nuc":["C1415T","G1914A","C27389T"],"ORF1a":["L384F","R550H"]},"labels":{"aa":"ORF1a: L384F, R550H"}},"children":[{"name":"FK.1.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FK.1.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.4682505348582815}},"branch_attrs":{"mutations":{}}},{"name":"FK.1.2.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"FK.1.2.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777398170504154}},"branch_attrs":{"mutations":{"nuc":["C2937T"],"ORF1a":["T891I"]},"labels":{"aa":"ORF1a: T891I"}}},{"name":"FK.1.2.2","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"FK.1.2.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810818882106859}},"branch_attrs":{"mutations":{"nuc":["G680A","G942A","C1931A","T11737C","C25583A"],"ORF1a":["D139N","R226K","Q556K"],"ORF3a":["T64N"]},"labels":{"aa":"ORF1a: D139N, R226K, Q556K; ORF3a: T64N"}}}]},{"name":"NODE_0000153","node_attrs":{"div":33,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.937678176688061}},"branch_attrs":{"mutations":{"nuc":["C27804T"]}},"children":[{"name":"internal_637a2219","node_attrs":{"div":36,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.4"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1.4"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.407079002038368}},"branch_attrs":{"mutations":{"nuc":["C21T","C23673T","T27511C"],"ORF7a":["Y40H"],"S":["S704L"]},"labels":{"aa":"ORF7a: Y40H; S: S704L","spike_mutations":"S704L"}},"children":[{"name":"FK.1.4","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"FK.1.4"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.407079002038368}},"branch_attrs":{"mutations":{}}},{"name":"FK.1.4.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"FK.1.4.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["G11521A","G22104C"],"ORF1a":["M3752I"],"S":["G181A"]},"labels":{"aa":"ORF1a: M3752I; S: G181A","spike_mutations":"G181A"}}}]},{"name":"internal_d1673169","node_attrs":{"div":37,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.937678176688061}},"branch_attrs":{"mutations":{"nuc":["T1465C","C21205A","A23416T","G28374A"],"N":["-31E","G34-"],"ORF1b":["L2580I"],"ORF9b":["G31R"]},"labels":{"aa":"N: -31E, G34-; ORF1b: L2580I; ORF9b: G31R"}},"children":[{"name":"FK.1.5","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"FK.1.5"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.71740515036454}},"branch_attrs":{"mutations":{"nuc":["G5155A","C12439T"]}}},{"name":"internal_5faff5ea","node_attrs":{"div":38,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.1"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1.1"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.255357283069431}},"branch_attrs":{"mutations":{"nuc":["G3443A"],"ORF1a":["A1060T"]},"labels":{"aa":"ORF1a: A1060T"}},"children":[{"name":"FK.1.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-04-13"},"Nextclade_pango":{"value":"FK.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.255357283069431}},"branch_attrs":{"mutations":{}}},{"name":"FK.1.1.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9276735911683928"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.16085999999999998"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"FK.1.1.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509736794437754}},"branch_attrs":{"mutations":{"nuc":["C44T","C4320T","C7765T","T22896C"],"ORF1a":["A1352V"],"S":["V445A"]},"labels":{"aa":"ORF1a: A1352V; S: V445A","spike_mutations":"V445A"}}},{"name":"FK.1.1.2","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"FK.1.1.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.275982676969486}},"branch_attrs":{"mutations":{"nuc":["C9223T","T23071G"]}}}]},{"name":"NODE_0000157","node_attrs":{"div":40,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.3"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1.3"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-5.208697256712644}},"branch_attrs":{"mutations":{"nuc":["T241-","C3874T","G18984A","G26888A"],"ORF1b":["M1839I"]},"labels":{"aa":"ORF1b: M1839I"}},"children":[{"name":"FK.1.3","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"FK.1.3"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.207773793817782}},"branch_attrs":{"mutations":{"nuc":["-241C"]}}},{"name":"FK.1.3.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"FK.1.3.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430477534290386}},"branch_attrs":{"mutations":{"nuc":["G23311C"],"S":["E583D"]},"labels":{"aa":"S: E583D","spike_mutations":"E583D"}}},{"name":"NODE_0000158","node_attrs":{"div":43,"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.3.2"},"clade_membership":{"value":"23C"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23C (CH.1.1)"},"Nextclade_pango":{"value":"FK.1.3.2"},"clade_nextstrain":{"value":"23C"},"placement_prior":{"value":-4.769429932627727}},"branch_attrs":{"mutations":{"nuc":["C44T","C9391T","T13596C"]}},"children":[{"name":"FK.1.3.2","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"FK.1.3.2"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.769429932627727}},"branch_attrs":{"mutations":{}}},{"name":"JL.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.9068050561483741"},"partiallyAliased":{"value":"BA.2.75.3.4.1.1.1.1.17.1.3.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23C"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23C (CH.1.1)"},"ace2_binding":{"value":"0.32796"},"designation_date":{"value":"2023-09-04"},"Nextclade_pango":{"value":"JL.1"},"clade_nextstrain":{"value":"23C"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.677290851244615}},"branch_attrs":{"mutations":{"nuc":["C17352T","G24893C","T25812C"],"S":["E1111Q"]},"labels":{"aa":"S: E1111Q","spike_mutations":"E1111Q"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]},{"name":"BA.45_internal","node_attrs":{"div":4,"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-3.671074357499815}},"branch_attrs":{"mutations":{"nuc":["G12160A","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T22917G","T23018G","G23040A"],"S":["H69-","V70-","L452R","F486V","R493Q"]},"labels":{"aa":"S: H69-, V70-, L452R, F486V, R493Q","spike_mutations":"H69-, V70-, L452R, F486V, R493Q"}},"children":[{"name":"NODE_0000160","node_attrs":{"div":5,"partiallyAliased":{"value":"BA.4"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-4.587027997545024}},"branch_attrs":{"mutations":{"nuc":["C28724T"],"N":["P151S"]},"labels":{"aa":"N: P151S","clade":"22A"}},"children":[{"name":"BA.4.8","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-21"},"Nextclade_pango":{"value":"BA.4.8"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.587027997545024}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000161","node_attrs":{"div":6,"partiallyAliased":{"value":"BA.4"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-3.296817903523997}},"branch_attrs":{"mutations":{"nuc":["A686-","A687-","G688-","T689-","C690-","A691-","T692-","T693-","T694-","G27788T"],"ORF1a":["K141-","S142-","F143-"],"ORF7b":["L11F"]},"labels":{"aa":"ORF1a: K141-, S142-, F143-; ORF7b: L11F"}},"children":[{"name":"BA.4","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-04-06"},"Nextclade_pango":{"value":"BA.4"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.296817903523997}},"branch_attrs":{"mutations":{}}},{"name":"BA.4.2","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BA.4.2"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4614579118321602}},"branch_attrs":{"mutations":{"nuc":["C5173A","T13078C"],"ORF1a":["H1636Q"]},"labels":{"aa":"ORF1a: H1636Q"}}},{"name":"NODE_0000162","node_attrs":{"div":7,"partiallyAliased":{"value":"BA.4"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-2.8875694311552698}},"branch_attrs":{"mutations":{"nuc":["A23535G"],"S":["N658S"]},"labels":{"aa":"S: N658S","spike_mutations":"N658S"}},"children":[{"name":"BA.4.3","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BA.4.3"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.62709510203965}},"branch_attrs":{"mutations":{"nuc":["C203T","T1453C","C21365T"],"ORF1b":["P2633L"]},"labels":{"aa":"ORF1b: P2633L"}}},{"name":"BA.4.4","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BA.4.4"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2938252738858393}},"branch_attrs":{"mutations":{"nuc":["C25708T"],"ORF3a":["L106F"]},"labels":{"aa":"ORF3a: L106F"}}},{"name":"BA.4.5","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BA.4.5"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.141812226831611}},"branch_attrs":{"mutations":{"nuc":["C1684T","G22104A","A25164T","C29708T"],"S":["G181E","Q1201L"]},"labels":{"aa":"S: G181E, Q1201L","spike_mutations":"G181E, Q1201L"}}},{"name":"BA.4.7","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.4.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5513799999999999"},"designation_date":{"value":"2022-07-09"},"Nextclade_pango":{"value":"BA.4.7"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.937729764071149}},"branch_attrs":{"mutations":{"nuc":["A10114G","A22600T","A25531G","G26690T"],"ORF3a":["I47V"],"S":["R346S"]},"labels":{"aa":"ORF3a: I47V; S: R346S","spike_mutations":"R346S"}}},{"name":"NODE_0000163","node_attrs":{"div":10,"partiallyAliased":{"value":"BA.4.6"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4.6"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-2.768275859694751}},"branch_attrs":{"mutations":{"nuc":["C8140T","C14599T","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.4.6","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.4.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-07-03"},"Nextclade_pango":{"value":"BA.4.6"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.768275859694751}},"branch_attrs":{"mutations":{}}},{"name":"BA.4.6.1","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.4.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-05"},"Nextclade_pango":{"value":"BA.4.6.1"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.075430062079432}},"branch_attrs":{"mutations":{"nuc":["G22017T"],"S":["W152L"]},"labels":{"aa":"S: W152L","spike_mutations":"W152L"}}},{"name":"BA.4.6.2","node_attrs":{"div":13,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.7360939491355138"},"partiallyAliased":{"value":"BA.4.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5026299999999999"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BA.4.6.2"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5915891351337095}},"branch_attrs":{"mutations":{"nuc":["A4233G","G7042T","T22896C"],"ORF1a":["D1323G","M2259I"],"S":["V445A"]},"labels":{"aa":"ORF1a: D1323G, M2259I; S: V445A","spike_mutations":"V445A"}}},{"name":"BA.4.6.3","node_attrs":{"div":13,"totalAminoacidDeletions":{"value":18},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.4.6.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.71883"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BA.4.6.3"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.369707009448985}},"branch_attrs":{"mutations":{"nuc":["G3152T","T21992-","A21993-","T21994-","G22894C","T22942G"],"ORF1a":["G963C"],"S":["Y144-","K444N","N460K"]},"labels":{"aa":"ORF1a: G963C; S: Y144-, K444N, N460K","spike_mutations":"Y144-, K444N, N460K"}}},{"name":"BA.4.6.4","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.4.6.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BA.4.6.4"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.927273312132788}},"branch_attrs":{"mutations":{"nuc":["A27579T"],"ORF7a":["Q62H"]},"labels":{"aa":"ORF7a: Q62H"}}},{"name":"NODE_0000164","node_attrs":{"div":11,"partiallyAliased":{"value":"BA.4.6.5"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4.6.5"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-3.843153257765573}},"branch_attrs":{"mutations":{"nuc":["A28390G"],"ORF9b":["N36S"]},"labels":{"aa":"ORF9b: N36S"}},"children":[{"name":"BA.4.6.5","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.4.6.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BA.4.6.5"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.843153257765573}},"branch_attrs":{"mutations":{}}},{"name":"DC.1","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6461962433206553"},"partiallyAliased":{"value":"BA.4.6.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.66094"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"DC.1"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.626151715730607}},"branch_attrs":{"mutations":{"nuc":["A22941G"],"S":["N460S"]},"labels":{"aa":"S: N460S","spike_mutations":"N460S"}}}]}]}]},{"name":"internal_813c","node_attrs":{"div":7,"partiallyAliased":{"value":"BA.4.1"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4.1"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-2.6813370646229586}},"branch_attrs":{"mutations":{"nuc":["T21570G"],"S":["V3G"]},"labels":{"aa":"S: V3G","spike_mutations":"V3G"}},"children":[{"name":"BA.4.1","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-05-22"},"Nextclade_pango":{"value":"BA.4.1"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.6813370646229586}},"branch_attrs":{"mutations":{}}},{"name":"BA.4.1.1","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-08"},"Nextclade_pango":{"value":"BA.4.1.1"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7390535541512957}},"branch_attrs":{"mutations":{"nuc":["A23570G"],"S":["I670V"]},"labels":{"aa":"S: I670V","spike_mutations":"I670V"}}},{"name":"BA.4.1.3","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BA.4.1.3"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.461959721815146}},"branch_attrs":{"mutations":{"nuc":["A2435G","C11758T","C28435T"],"ORF1a":["R724G"],"ORF9b":["P51L"]},"labels":{"aa":"ORF1a: R724G; ORF9b: P51L"}}},{"name":"BA.4.1.4","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BA.4.1.4"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.097848875020928}},"branch_attrs":{"mutations":{"nuc":["G25266T"],"S":["C1235F"]},"labels":{"aa":"S: C1235F","spike_mutations":"C1235F"}}},{"name":"BA.4.1.5","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.4.1.5"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.476362391424523}},"branch_attrs":{"mutations":{"nuc":["A3046G","C20762T"],"ORF1b":["T2432I"]},"labels":{"aa":"ORF1b: T2432I"}}},{"name":"BA.4.1.6","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.4.1.6"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9262976941007746}},"branch_attrs":{"mutations":{"nuc":["C13329T"],"ORF1a":["T4355I"]},"labels":{"aa":"ORF1a: T4355I"}}},{"name":"BA.4.1.8","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":20},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.4.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-07-29"},"Nextclade_pango":{"value":"BA.4.1.8"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":53},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.787879596845265}},"branch_attrs":{"mutations":{"nuc":["C14322T","T18603C","G22599C","T27786-","T27787-","T27788-","T27789-","G27790-","C27791-","T27792-","T27793-","C28720T"],"ORF7b":["F11-","C12-","F13-"],"S":["R346T"]},"labels":{"aa":"ORF7b: F11-, C12-, F13-; S: R346T","spike_mutations":"R346T"}}},{"name":"BA.4.1.9","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.4.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-08-27"},"Nextclade_pango":{"value":"BA.4.1.9"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9747082588344163}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}},{"name":"NODE_0000166","node_attrs":{"div":8,"partiallyAliased":{"value":"BA.4.1"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4.1"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-5.306359895134914}},"branch_attrs":{"mutations":{"nuc":["C14407T"],"ORF1b":["L314F"]},"labels":{"aa":"ORF1b: L314F"}},"children":[{"name":"BA.4.1.2","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-09"},"Nextclade_pango":{"value":"BA.4.1.2"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.859817613267482}},"branch_attrs":{"mutations":{"nuc":["C3176T","C27644T","C29686T","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"ORF1a":["P971S"],"ORF7a":["P84L"]},"labels":{"aa":"ORF1a: P971S; ORF7a: P84L"}}},{"name":"BA.4.1.7","node_attrs":{"div":13,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.4.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.4.1.7"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.614022866157567}},"branch_attrs":{"mutations":{"nuc":["A6084G","C17439T","A18941G","A21717G","C26885T"],"ORF1a":["D1940G"],"ORF1b":["D1825G"],"S":["Q52R"]},"labels":{"aa":"ORF1a: D1940G; ORF1b: D1825G; S: Q52R","spike_mutations":"Q52R"}}}]},{"name":"NODE_0000167","node_attrs":{"div":9,"partiallyAliased":{"value":"BA.4.1"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4.1"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-4.285342681533717}},"branch_attrs":{"mutations":{"nuc":["G22599C","G29179A"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.4.1.11","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.7360939491355138"},"partiallyAliased":{"value":"BA.4.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5026299999999999"},"designation_date":{"value":"2023-02-03"},"Nextclade_pango":{"value":"BA.4.1.11"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.03269687472432}},"branch_attrs":{"mutations":{"nuc":["C10615T","T15978C","A22001G","T22896C","C27389T","C27476T","A27946T"],"ORF7a":["T28I"],"ORF8":["Q18L"],"S":["K147E","V445A"]},"labels":{"aa":"ORF7a: T28I; ORF8: Q18L; S: K147E, V445A","spike_mutations":"K147E, V445A"}}},{"name":"NODE_0000168","node_attrs":{"div":11,"partiallyAliased":{"value":"BA.4.1.10"},"clade_membership":{"value":"22A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22A (BA.4)"},"Nextclade_pango":{"value":"BA.4.1.10"},"clade_nextstrain":{"value":"22A"},"placement_prior":{"value":-4.714668948061999}},"branch_attrs":{"mutations":{"nuc":["A22622G","G25538T"],"ORF3a":["G49V"],"S":["N354D"]},"labels":{"aa":"ORF3a: G49V; S: N354D","spike_mutations":"N354D"}},"children":[{"name":"BA.4.1.10","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.6594692035378332"},"partiallyAliased":{"value":"BA.4.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.67074"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BA.4.1.10"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.714668948061999}},"branch_attrs":{"mutations":{}}},{"name":"CS.1","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.8457740335982278"},"partiallyAliased":{"value":"BA.4.1.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22A (BA.4)"},"ace2_binding":{"value":"0.5702799999999999"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"CS.1"},"clade_nextstrain":{"value":"22A"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907448232484907}},"branch_attrs":{"mutations":{"nuc":["C44T","C6070T","G17259C","A22893G","C29784T","C29837T"],"ORF1b":["E1264D"],"S":["K444R"]},"labels":{"aa":"ORF1b: E1264D; S: K444R","spike_mutations":"K444R"}}}]}]}]}]}]},{"name":"NODE_0000169","node_attrs":{"div":12,"partiallyAliased":{"value":"BA.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.183480811910299}},"branch_attrs":{"mutations":{"nuc":["G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","G29868A"],"M":["D3N"],"ORF6":["L61D"]},"labels":{"aa":"M: D3N; ORF6: L61D","clade":"22B"}},"children":[{"name":"BA.5","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-04-06"},"Nextclade_pango":{"value":"BA.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.183480811910299}},"branch_attrs":{"mutations":{}}},{"name":"BA.5.9","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39901000000000003"},"designation_date":{"value":"2022-07-24"},"Nextclade_pango":{"value":"BA.5.9"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2236604976835257}},"branch_attrs":{"mutations":{"nuc":["T1570C","C11514T","C11674T","C17676T","C18804T","G22599T"],"ORF1a":["T3750I"],"S":["R346I"]},"labels":{"aa":"ORF1a: T3750I; S: R346I","spike_mutations":"R346I"}}},{"name":"NODE_0000170","node_attrs":{"div":14,"partiallyAliased":{"value":"BA.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.0460505503957185}},"branch_attrs":{"mutations":{"nuc":["A6551C","G29032A"],"ORF1a":["M2096L"]},"labels":{"aa":"ORF1a: M2096L"}},"children":[{"name":"BA.5.7","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.5.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.140608960688018}},"branch_attrs":{"mutations":{"nuc":["G536A","C1314T","C11653T","G14400T","C27532G"],"ORF1a":["E91K","T350I"],"ORF7a":["H47D"]},"labels":{"aa":"ORF1a: E91K, T350I; ORF7a: H47D"}}},{"name":"BA.5.8","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-24"},"Nextclade_pango":{"value":"BA.5.8"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.387448365887463}},"branch_attrs":{"mutations":{"nuc":["G17278T","C20594T","C25047T"],"ORF1b":["V1271L","T2376I"],"S":["P1162L"]},"labels":{"aa":"ORF1b: V1271L, T2376I; S: P1162L","spike_mutations":"P1162L"}}}]},{"name":"NODE_0000171","node_attrs":{"div":13,"partiallyAliased":{"value":"BA.5.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.91675089466235}},"branch_attrs":{"mutations":{"nuc":["C21789T"],"S":["T76I"]},"labels":{"aa":"S: T76I","spike_mutations":"T76I"}},"children":[{"name":"BA.5.5","node_attrs":{"div":13,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-06"},"Nextclade_pango":{"value":"BA.5.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.91675089466235}},"branch_attrs":{"mutations":{}}},{"name":"BA.5.5.2","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-29"},"Nextclade_pango":{"value":"BA.5.5.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.057523501931167}},"branch_attrs":{"mutations":{"nuc":["C4540T","G15452T","C24766T"],"ORF1b":["G662V"]},"labels":{"aa":"ORF1b: G662V"}}},{"name":"NODE_0000172","node_attrs":{"div":14,"partiallyAliased":{"value":"BA.5.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.8842747742967907}},"branch_attrs":{"mutations":{"nuc":["C5512T"]}},"children":[{"name":"BA.5.5.1","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-08-16"},"Nextclade_pango":{"value":"BA.5.5.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.461888432379062}},"branch_attrs":{"mutations":{"nuc":["A22910G","G28077T"],"ORF8":["V62L"],"S":["N450D"]},"labels":{"aa":"ORF8: V62L; S: N450D","spike_mutations":"N450D"}}},{"name":"BA.5.5.3","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-02"},"Nextclade_pango":{"value":"BA.5.5.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.400468323558762}},"branch_attrs":{"mutations":{"nuc":["T4388C","G9761T","T14408G"],"ORF1a":["V3166F"],"ORF1b":["L314R"]},"labels":{"aa":"ORF1a: V3166F; ORF1b: L314R"}}}]}]},{"name":"NODE_0000173","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.6"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.6"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.0232860213605672}},"branch_attrs":{"mutations":{"nuc":["T4906C","C17402T","T18957C","C21077T"],"ORF1b":["A1312V","T2537I"]},"labels":{"aa":"ORF1b: A1312V, T2537I"}},"children":[{"name":"BA.5.6","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BA.5.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0232860213605672}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000174","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.6"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.6"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.124181831378374}},"branch_attrs":{"mutations":{"nuc":["G18984T"],"ORF1b":["M1839I"]},"labels":{"aa":"ORF1b: M1839I"}},"children":[{"name":"BA.5.6.1","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.5.6.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9598568224399195}},"branch_attrs":{"mutations":{"nuc":["T29597C"]}}},{"name":"BA.5.6.3","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.6.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BA.5.6.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.752643459178449}},"branch_attrs":{"mutations":{"nuc":["C21697T","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}},{"name":"BA.5.6.4","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.6.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5883099999999998"},"designation_date":{"value":"2022-10-17"},"Nextclade_pango":{"value":"BA.5.6.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.95345816445157}},"branch_attrs":{"mutations":{"nuc":["T979A","A22598G","G22599A"],"S":["R346E"]},"labels":{"aa":"S: R346E","spike_mutations":"R346E"}}}]},{"name":"NODE_0000175","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.6.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.6.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.313085393402389}},"branch_attrs":{"mutations":{"nuc":["C8605T","A22893C"],"S":["K444T"]},"labels":{"aa":"S: K444T","spike_mutations":"K444T"}},"children":[{"name":"BA.5.6.2","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45952999999999994"},"designation_date":{"value":"2022-08-15"},"Nextclade_pango":{"value":"BA.5.6.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.313085393402389}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000176","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.6.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BW.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.634349605966935}},"branch_attrs":{"mutations":{"nuc":["G2144A","C14599T","T22942G"],"ORF1a":["V627I"],"S":["N460K"]},"labels":{"aa":"ORF1a: V627I; S: N460K","spike_mutations":"N460K"}},"children":[{"name":"BW.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.6.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BW.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.634349605966935}},"branch_attrs":{"mutations":{}}},{"name":"BW.1.2","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.6.2.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6570799999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BW.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.840288766738841}},"branch_attrs":{"mutations":{"nuc":["A4916G","T21992-","A21993-","T21994-","A22600T"],"ORF1a":["I1551V"],"S":["Y144-","R346S"]},"labels":{"aa":"ORF1a: I1551V; S: Y144-, R346S","spike_mutations":"Y144-, R346S"}}},{"name":"NODE_0000177","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.6.2.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BW.1.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.48422753254548}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","T23019C","G29044A"],"S":["Y144-","V486A"]},"labels":{"aa":"S: Y144-, V486A","spike_mutations":"Y144-, V486A"}},"children":[{"name":"BW.1.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.6.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.77355"},"designation_date":{"value":"2022-11-20"},"Nextclade_pango":{"value":"BW.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.48422753254548}},"branch_attrs":{"mutations":{}}},{"name":"BW.1.1.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.6.2.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.77355"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BW.1.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.412668452347307}},"branch_attrs":{"mutations":{"nuc":["C2855T","C23557T"],"ORF1a":["L864F"]},"labels":{"aa":"ORF1a: L864F"}}},{"name":"BW.1.1.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.6.2.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.77355"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BW.1.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.746358962425221}},"branch_attrs":{"mutations":{"nuc":["C16468T"],"ORF1b":["P1001S"]},"labels":{"aa":"ORF1b: P1001S"}}}]}]}]}]},{"name":"NODE_0000178","node_attrs":{"div":14,"partiallyAliased":{"value":"BA.5.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.2582376736538334}},"branch_attrs":{"mutations":{"nuc":["T27438C","C29666T"]}},"children":[{"name":"BA.5.1","node_attrs":{"div":14,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-05-11"},"Nextclade_pango":{"value":"BA.5.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.2582376736538334}},"branch_attrs":{"mutations":{}}},{"name":"BA.5.1.11","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-18"},"Nextclade_pango":{"value":"BA.5.1.11"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.445028705969379}},"branch_attrs":{"mutations":{"nuc":["T6376C","T7368C","A12030G","G28904T","T29867A"],"N":["A211S"],"ORF1a":["I2368T","Q3922R"]},"labels":{"aa":"N: A211S; ORF1a: I2368T, Q3922R"}}},{"name":"BA.5.1.12","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2022-08-22"},"Nextclade_pango":{"value":"BA.5.1.12"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.407608573087075}},"branch_attrs":{"mutations":{"nuc":["T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"BA.5.1.14","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-22"},"Nextclade_pango":{"value":"BA.5.1.14"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16632631491336}},"branch_attrs":{"mutations":{"nuc":["G7452T"],"ORF1a":["S2396I"]},"labels":{"aa":"ORF1a: S2396I"}}},{"name":"BA.5.1.16","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.1.16"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.999539020012406}},"branch_attrs":{"mutations":{"nuc":["A2969G","G27470A"],"ORF1a":["M902V"],"ORF7a":["G26D"]},"labels":{"aa":"ORF1a: M902V; ORF7a: G26D"}}},{"name":"BA.5.1.17","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.1.17"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8031532596208417}},"branch_attrs":{"mutations":{"nuc":["C25517T"],"ORF3a":["P42L"]},"labels":{"aa":"ORF3a: P42L"}}},{"name":"BA.5.1.2","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-25"},"Nextclade_pango":{"value":"BA.5.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2562164976815335}},"branch_attrs":{"mutations":{"nuc":["G27214A"],"ORF6":["V5I"]},"labels":{"aa":"ORF6: V5I"}}},{"name":"BA.5.1.24","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BA.5.1.24"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3193515672986305}},"branch_attrs":{"mutations":{"nuc":["A1T","G17278T"],"ORF1b":["V1271L"]},"labels":{"aa":"ORF1b: V1271L"}}},{"name":"BA.5.1.28","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.1.28"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2083900316419705}},"branch_attrs":{"mutations":{"nuc":["A18480G","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}},{"name":"BA.5.1.3","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-26"},"Nextclade_pango":{"value":"BA.5.1.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.125161480407533}},"branch_attrs":{"mutations":{"nuc":["G22427A"],"S":["V289I"]},"labels":{"aa":"S: V289I","spike_mutations":"V289I"}}},{"name":"BA.5.1.30","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-23"},"Nextclade_pango":{"value":"BA.5.1.30"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.912374061497095}},"branch_attrs":{"mutations":{"nuc":["C16323T","A27218G"],"ORF6":["D6G"]},"labels":{"aa":"ORF6: D6G"}}},{"name":"BA.5.1.34","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":20},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.1.34"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.023904688294735}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","C2142T","C11530T","C15720T","A22001-","A22002-","A22003-","A22004-","A22005-","C22006-","C25046T"],"ORF1a":["G82-","H83-","V84-","M85-","P626L"],"S":["K147-","N148-","P1162S"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, P626L; S: K147-, N148-, P1162S","spike_mutations":"K147-, N148-, P1162S"}}},{"name":"BA.5.1.4","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-03"},"Nextclade_pango":{"value":"BA.5.1.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.031021897955873}},"branch_attrs":{"mutations":{"nuc":["G3614A","C4794G","G16700T","C18303A"],"ORF1a":["V1117I","S1510C"],"ORF1b":["R1078L"]},"labels":{"aa":"ORF1a: V1117I, S1510C; ORF1b: R1078L"}}},{"name":"BA.5.1.5","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-20"},"Nextclade_pango":{"value":"BA.5.1.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.1861392919242655}},"branch_attrs":{"mutations":{"nuc":["C16428T","C25350A"],"S":["P1263Q"]},"labels":{"aa":"S: P1263Q","spike_mutations":"P1263Q"}}},{"name":"BA.5.1.6","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.5.1.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.540626377452803}},"branch_attrs":{"mutations":{"nuc":["G4622A","T5653C"],"ORF1a":["V1453I"]},"labels":{"aa":"ORF1a: V1453I"}}},{"name":"BA.5.1.7","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.5.1.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.83148004566073}},"branch_attrs":{"mutations":{"nuc":["C44T","C15026T","C16293T","C20462T"],"ORF1b":["A520V","T2332I"]},"labels":{"aa":"ORF1b: A520V, T2332I"}}},{"name":"BA.5.1.8","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.5.1.8"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.610278391430805}},"branch_attrs":{"mutations":{"nuc":["C10798T","C12747T","C21110T"],"ORF1a":["T4161I"],"ORF1b":["T2548I"]},"labels":{"aa":"ORF1a: T4161I; ORF1b: T2548I"}}},{"name":"NODE_0000179","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.1.10"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.10"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.330852166370201}},"branch_attrs":{"mutations":{"nuc":["A11781G","C28462T"],"ORF1a":["K3839R"],"ORF9b":["T60I"]},"labels":{"aa":"ORF1a: K3839R; ORF9b: T60I"}},"children":[{"name":"BA.5.1.10","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-16"},"Nextclade_pango":{"value":"BA.5.1.10"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.330852166370201}},"branch_attrs":{"mutations":{}}},{"name":"BK.1","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-16"},"Nextclade_pango":{"value":"BK.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9006379968187574}},"branch_attrs":{"mutations":{"nuc":["G1820A"],"ORF1a":["G519S"]},"labels":{"aa":"ORF1a: G519S"}}}]},{"name":"internal_6f22","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.1.15"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.15"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.079035974715932}},"branch_attrs":{"mutations":{"nuc":["C10790T"],"ORF1a":["H3509Y"]},"labels":{"aa":"ORF1a: H3509Y"}},"children":[{"name":"BA.5.1.15","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.1.15"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.079035974715932}},"branch_attrs":{"mutations":{}}},{"name":"DL.1","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-12-03"},"Nextclade_pango":{"value":"DL.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8108592652610196}},"branch_attrs":{"mutations":{"nuc":["C8140T","C19029T","G22894T","T22942G","G23593T"],"S":["K444N","N460K","Q677H"]},"labels":{"aa":"S: K444N, N460K, Q677H","spike_mutations":"K444N, N460K, Q677H"}}}]},{"name":"NODE_0000181","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.1.22"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.22"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.228723472610151}},"branch_attrs":{"mutations":{"nuc":["C17285T"],"ORF1b":["S1273L"]},"labels":{"aa":"ORF1b: S1273L"}},"children":[{"name":"BA.5.1.22","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BA.5.1.22"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.228723472610151}},"branch_attrs":{"mutations":{}}},{"name":"DH.1","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.22.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-11-09"},"Nextclade_pango":{"value":"DH.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.415380162195194}},"branch_attrs":{"mutations":{"nuc":["C6543T","G6860A","A8456G","A21993-","T21994-","T21995-","A21996-","C21997-","C21998-"],"ORF1a":["T2093I","A2199T","S2731G"],"S":["Y145-","H146-"]},"labels":{"aa":"ORF1a: T2093I, A2199T, S2731G; S: Y145-, H146-","spike_mutations":"Y145-, H146-"}}}]},{"name":"NODE_0000182","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.1.26"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.26"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.484752339208776}},"branch_attrs":{"mutations":{"nuc":["G22599C","A25594G","C26681T"],"ORF3a":["R68G"],"S":["R346T"]},"labels":{"aa":"ORF3a: R68G; S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.5.1.26","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.1.26"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.484752339208776}},"branch_attrs":{"mutations":{}}},{"name":"CU.1","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.26.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"CU.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.06083836083348}},"branch_attrs":{"mutations":{"nuc":["C21846T","C23202A"],"S":["T95I","T547K"]},"labels":{"aa":"S: T95I, T547K","spike_mutations":"T95I, T547K"}}}]},{"name":"internal_35cd","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.298268670052671}},"branch_attrs":{"mutations":{"nuc":["G25855T"],"ORF3a":["D155Y"]},"labels":{"aa":"ORF3a: D155Y"}},"children":[{"name":"BA.5.1.31","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-11-15"},"Nextclade_pango":{"value":"BA.5.1.31"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777429636797247}},"branch_attrs":{"mutations":{"nuc":["A5317G","C5339T","C6310T","C12853T","G16975A","C26636T","C28435T"],"ORF1a":["P1692S"],"ORF1b":["V1170I"],"ORF9b":["P51L"]},"labels":{"aa":"ORF1a: P1692S; ORF1b: V1170I; ORF9b: P51L"}}},{"name":"BA.5.1.38","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.1.38"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.965751778107672}},"branch_attrs":{"mutations":{"nuc":["A13611G","G21232A","G21255T","G22599C","C24700T","C28201T","C28531T","C29518T","T29867A"],"ORF1b":["A2589T"],"ORF8":["S103L"],"ORF9b":["T83I"],"S":["R346T"]},"labels":{"aa":"ORF1b: A2589T; ORF8: S103L; ORF9b: T83I; S: R346T","spike_mutations":"R346T"}}}]},{"name":"NODE_0000184","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.1.33"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.33"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.33606033114432}},"branch_attrs":{"mutations":{"nuc":["A4595G","G15451A","G25352T","C28567T"],"ORF1a":["T1444A"],"ORF1b":["G662S"],"ORF9b":["T95M"],"S":["V1264L"]},"labels":{"aa":"ORF1a: T1444A; ORF1b: G662S; ORF9b: T95M; S: V1264L","spike_mutations":"V1264L"}},"children":[{"name":"BA.5.1.33","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.1.33"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.33606033114432}},"branch_attrs":{"mutations":{}}},{"name":"EQ.1","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.33.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-28"},"Nextclade_pango":{"value":"EQ.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.66888277245874}},"branch_attrs":{"mutations":{"nuc":["G21604T"],"S":["Q14H"]},"labels":{"aa":"S: Q14H","spike_mutations":"Q14H"}}}]},{"name":"internal_8226","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.1.35"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.35"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.104698100157261}},"branch_attrs":{"mutations":{"nuc":["A4840G"],"ORF1a":["I1525M"]},"labels":{"aa":"ORF1a: I1525M"}},"children":[{"name":"BA.5.1.35","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.1.35"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.104698100157261}},"branch_attrs":{"mutations":{}}},{"name":"EB.1","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.35.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"EB.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.716499605178185}},"branch_attrs":{"mutations":{"nuc":["A9409G","A13623G","G22599C","C28531T"],"ORF9b":["T83I"],"S":["R346T"]},"labels":{"aa":"ORF9b: T83I; S: R346T","spike_mutations":"R346T"}}}]},{"name":"internal_bae4","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.1.23"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.23"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.810681080222586}},"branch_attrs":{"mutations":{"nuc":["C1170T"],"ORF1a":["S302F"]},"labels":{"aa":"ORF1a: S302F"}},"children":[{"name":"BA.5.1.23","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BA.5.1.23"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.810681080222586}},"branch_attrs":{"mutations":{}}},{"name":"internal_4e3e","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.1.23"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.23"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.0878973833344494}},"branch_attrs":{"mutations":{"nuc":["T27696C"]}},"children":[{"name":"DE.1","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.23.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-11-05"},"Nextclade_pango":{"value":"DE.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3637396195028915}},"branch_attrs":{"mutations":{"nuc":["C23643T"],"S":["A694V"]},"labels":{"aa":"S: A694V","spike_mutations":"A694V"}}},{"name":"DE.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.23.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-05"},"Nextclade_pango":{"value":"DE.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167391139161463}},"branch_attrs":{"mutations":{"nuc":["G2267A","G2494A","T4579A","G12211A","T15326C","C22000T","G22104T","G22599C","C25792T"],"ORF1a":["A668T"],"ORF1b":["M620T"],"ORF3a":["R134C"],"S":["G181V","R346T"]},"labels":{"aa":"ORF1a: A668T; ORF1b: M620T; ORF3a: R134C; S: G181V, R346T","spike_mutations":"G181V, R346T"}}}]}]},{"name":"NODE_0000188","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.4173395127711825}},"branch_attrs":{"mutations":{"nuc":["C10507T","G19174A"],"ORF1b":["D1903N"]},"labels":{"aa":"ORF1b: D1903N"}},"children":[{"name":"BA.5.1.18","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-08-28"},"Nextclade_pango":{"value":"BA.5.1.18"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.738323555417599}},"branch_attrs":{"mutations":{"nuc":["C1514T","C10279T","C14396T","G17893T","G22599C","T27482A"],"ORF1a":["H417Y"],"ORF1b":["T310I","A1476S"],"ORF7a":["L30H"],"S":["R346T"]},"labels":{"aa":"ORF1a: H417Y; ORF1b: T310I, A1476S; ORF7a: L30H; S: R346T","spike_mutations":"R346T"}}},{"name":"NODE_0000189","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.1.21"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.21"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.087747755874607}},"branch_attrs":{"mutations":{"nuc":["G15451A","C29284T"],"ORF1b":["G662S"]},"labels":{"aa":"ORF1b: G662S"}},"children":[{"name":"BA.5.1.21","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-14"},"Nextclade_pango":{"value":"BA.5.1.21"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.087747755874607}},"branch_attrs":{"mutations":{}}},{"name":"BT.1","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.21.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-14"},"Nextclade_pango":{"value":"BT.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.63573489006066}},"branch_attrs":{"mutations":{"nuc":["C27494A"],"ORF7a":["P34H"]},"labels":{"aa":"ORF7a: P34H"}}},{"name":"BT.2","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.21.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-17"},"Nextclade_pango":{"value":"BT.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3400576112322575}},"branch_attrs":{"mutations":{"nuc":["A28288G"],"ORF9b":["D2G"]},"labels":{"aa":"ORF9b: D2G"}}}]}]},{"name":"internal_2d50","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.1.25"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.25"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.722587191177646}},"branch_attrs":{"mutations":{"nuc":["C11494T","C27879T"],"ORF7b":["H42Y"]},"labels":{"aa":"ORF7b: H42Y"}},"children":[{"name":"BA.5.1.25","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BA.5.1.25"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.722587191177646}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000191","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.1.25.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"DJ.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.8514784655121}},"branch_attrs":{"mutations":{"nuc":["T2C","G22894T"],"S":["K444N"]},"labels":{"aa":"S: K444N","spike_mutations":"K444N"}},"children":[{"name":"DJ.1","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.1.25.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.40293000000000007"},"designation_date":{"value":"2022-11-23"},"Nextclade_pango":{"value":"DJ.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8514784655121}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000192","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.1.25.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"DJ.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.1474295590639825}},"branch_attrs":{"mutations":{"nuc":["T22942G"],"S":["N460K"]},"labels":{"aa":"S: N460K","spike_mutations":"N460K"}},"children":[{"name":"DJ.1.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":19},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.25.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-12-10"},"Nextclade_pango":{"value":"DJ.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094842958234737}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","C4234T","G8872T","A12644G","C14599T","C22088T","G28287A"],"N":["G5E"],"ORF1a":["G82-","H83-","V84-","M85-","V86-","L2869F","I4127V"],"ORF9b":["D2N"],"S":["L176F"]},"labels":{"aa":"N: G5E; ORF1a: G82-, H83-, V84-, M85-, V86-, L2869F, I4127V; ORF9b: D2N; S: L176F","spike_mutations":"L176F"}}},{"name":"DJ.1.3","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.25.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-12-23"},"Nextclade_pango":{"value":"DJ.1.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430619107148178}},"branch_attrs":{"mutations":{"nuc":["T9070C","C10125T","A18556G","A22924G"],"ORF1a":["T3287I"],"ORF1b":["T1697A"]},"labels":{"aa":"ORF1a: T3287I; ORF1b: T1697A"}}},{"name":"NODE_0000193","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.1.25.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"DJ.1.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.186169893515141}},"branch_attrs":{"mutations":{"nuc":["C21757T","A29066T"],"N":["T265S"]},"labels":{"aa":"N: T265S"}},"children":[{"name":"DJ.1.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.25.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-11-23"},"Nextclade_pango":{"value":"DJ.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.186169893515141}},"branch_attrs":{"mutations":{}}},{"name":"DJ.1.1.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.25.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-01-31"},"Nextclade_pango":{"value":"DJ.1.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.167405683761405}},"branch_attrs":{"mutations":{"nuc":["C2T","C920T","G12661A","T15516C","C18747T","A22003T","G28027C"],"ORF8":["W45S"],"S":["K147N"]},"labels":{"aa":"ORF8: W45S; S: K147N","spike_mutations":"K147N"}}}]}]}]}]},{"name":"internal_b005","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.470383073771662}},"branch_attrs":{"mutations":{"nuc":["A16541G"],"ORF1b":["N1025S"]},"labels":{"aa":"ORF1b: N1025S"}},"children":[{"name":"BA.5.1.27","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.1.27"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"frameShifts":{"value":"ORF8:122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.82679003682444}},"branch_attrs":{"mutations":{"nuc":["A12949G","G22599C","A28254-"],"ORF8":["I121-"],"S":["R346T"]},"labels":{"aa":"ORF8: I121-; S: R346T","spike_mutations":"R346T"}}},{"name":"internal_1b4f","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.1.29"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1.29"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.846395943699607}},"branch_attrs":{"mutations":{"nuc":["G22894T","G28925T"],"N":["A218S"],"S":["K444N"]},"labels":{"aa":"N: A218S; S: K444N","spike_mutations":"K444N"}},"children":[{"name":"BA.5.1.29","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.40293000000000007"},"designation_date":{"value":"2022-10-07"},"Nextclade_pango":{"value":"BA.5.1.29"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.846395943699607}},"branch_attrs":{"mutations":{}}},{"name":"internal_f0e8","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.1.29.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CL.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.165174160402473}},"branch_attrs":{"mutations":{"nuc":["A1G","C9226T","A22010G","T22942A","T28015G"],"ORF8":["F41C"],"S":["K150E","N460K"]},"labels":{"aa":"ORF8: F41C; S: K150E, N460K","spike_mutations":"K150E, N460K"}},"children":[{"name":"CL.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.29.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"CL.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.165174160402473}},"branch_attrs":{"mutations":{}}},{"name":"CL.1.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.29.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"CL.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.333736351351515}},"branch_attrs":{"mutations":{"nuc":["C10894T","C13968T","C25047T"],"S":["P1162L"]},"labels":{"aa":"S: P1162L","spike_mutations":"P1162L"}}},{"name":"NODE_0000197","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.1.29.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CL.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.412917123346063}},"branch_attrs":{"mutations":{"nuc":["T17319C","C22120T"]}},"children":[{"name":"CL.1.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.29.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"CL.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.623334638104589}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"CL.1.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.1.29.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"CL.1.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.717432556672498}},"branch_attrs":{"mutations":{"nuc":["C21774T"],"S":["S71F"]},"labels":{"aa":"S: S71F","spike_mutations":"S71F"}}}]}]}]}]},{"name":"NODE_0000198","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.7339326741036056}},"branch_attrs":{"mutations":{"nuc":["C29614T"]}},"children":[{"name":"BA.5.1.1","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BA.5.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.06482069537232}},"branch_attrs":{"mutations":{"nuc":["C25672A"],"ORF3a":["L94I"]},"labels":{"aa":"ORF3a: L94I"}}},{"name":"BA.5.1.19","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-04"},"Nextclade_pango":{"value":"BA.5.1.19"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.061833772273446}},"branch_attrs":{"mutations":{"nuc":["G15451T"],"ORF1b":["G662C"]},"labels":{"aa":"ORF1b: G662C"}}},{"name":"BA.5.1.32","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-15"},"Nextclade_pango":{"value":"BA.5.1.32"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.906818026467339}},"branch_attrs":{"mutations":{"nuc":["C10615T","C14265T","C17130T","C17746T","G18160A","C23191T","G28509T","G29090T"],"N":["S79I","A273S"],"ORF1b":["P1427S","D1565N"],"ORF9b":["V76F"]},"labels":{"aa":"N: S79I, A273S; ORF1b: P1427S, D1565N; ORF9b: V76F"}}},{"name":"BA.5.1.9","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-03"},"Nextclade_pango":{"value":"BA.5.1.9"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.212974101290871}},"branch_attrs":{"mutations":{"nuc":["C5221T","A14827G","A27218G"],"ORF1b":["M454V"],"ORF6":["D6G"]},"labels":{"aa":"ORF1b: M454V; ORF6: D6G"}}},{"name":"NODE_0000199","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.163786551860201}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.5.1.20","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-07"},"Nextclade_pango":{"value":"BA.5.1.20"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6218696868882265}},"branch_attrs":{"mutations":{"nuc":["A4485T"],"ORF1a":["K1407M"]},"labels":{"aa":"ORF1a: K1407M"}}},{"name":"BA.5.1.36","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.1.36"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978340606648043}},"branch_attrs":{"mutations":{"nuc":["T2884C","T11940C","T13983C","G22344T","G28325T"],"N":["G18C"],"ORF1a":["V3892A"],"ORF9b":["L14F"],"S":["G261V"]},"labels":{"aa":"N: G18C; ORF1a: V3892A; ORF9b: L14F; S: G261V","spike_mutations":"G261V"}}},{"name":"BA.5.1.37","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.1.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.1.37"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.040814541341375}},"branch_attrs":{"mutations":{"nuc":["G17721T","T22304A"],"S":["Y248N"]},"labels":{"aa":"S: Y248N","spike_mutations":"Y248N"}}}]}]}]},{"name":"NODE_0000200","node_attrs":{"div":13,"partiallyAliased":{"value":"BA.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.139891967395101}},"branch_attrs":{"mutations":{"nuc":["C1627T"]}},"children":[{"name":"BA.5.11","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":22},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BA.5.11"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.830814375925189}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","G22599C","C27389T","T27523C","G27667-","A27668-","A27669-","G27670-","T27671-","T27672-","C27673-","A27674-","A27675-","A27677G"],"ORF1a":["G82-","H83-","V84-","M85-","V86-"],"ORF7a":["S44P","E92-","V93-","Q94-","E95G"],"S":["R346T"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-; ORF7a: S44P, E92-, V93-, Q94-, E95G; S: R346T","spike_mutations":"R346T"}}},{"name":"internal_6f02","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.10"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.10"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.379380405897037}},"branch_attrs":{"mutations":{"nuc":["C884T","A12030G","G22346T","A26392G","G29422T"],"E":["S50G"],"ORF1a":["R207C","Q3922R"],"S":["A262S"]},"labels":{"aa":"E: S50G; ORF1a: R207C, Q3922R; S: A262S","spike_mutations":"A262S"}},"children":[{"name":"BA.5.10","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-18"},"Nextclade_pango":{"value":"BA.5.10"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.379380405897037}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000202","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.10.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.10.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.289712473505369}},"branch_attrs":{"mutations":{"nuc":["C44T","C9803T","C20762T","G22599C"],"ORF1b":["T2432I"],"S":["R346T"]},"labels":{"aa":"ORF1b: T2432I; S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.5.10.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BA.5.10.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.289712473505369}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000203","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.10.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"DF.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.46384133206768}},"branch_attrs":{"mutations":{"nuc":["A3858G","T13794C","T21992-","A21993-","T21994-"],"ORF1a":["Q1198R"],"S":["Y144-"]},"labels":{"aa":"ORF1a: Q1198R; S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"DF.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.10.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-06"},"Nextclade_pango":{"value":"DF.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.46384133206768}},"branch_attrs":{"mutations":{}}},{"name":"DF.1.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.7360939491355138"},"partiallyAliased":{"value":"BA.5.10.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5026299999999999"},"designation_date":{"value":"2023-01-01"},"Nextclade_pango":{"value":"DF.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.293214791073974}},"branch_attrs":{"mutations":{"nuc":["C15738T","T22896C","C28045T"],"ORF8":["A51V"],"S":["V445A"]},"labels":{"aa":"ORF8: A51V; S: V445A","spike_mutations":"V445A"}}}]}]}]},{"name":"BA52_BA510_internal","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.720389420521949}},"branch_attrs":{"mutations":{"nuc":["A1G","A28330G"],"ORF9b":["D16G"]},"labels":{"aa":"ORF9b: D16G"}},"children":[{"name":"BA.5.2","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-05-25"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.720389420521949}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000205","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.646598415721534}},"branch_attrs":{"mutations":{"nuc":["A27038G"]}},"children":[{"name":"BA.5.2.1","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-02"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.646598415721534}},"branch_attrs":{"mutations":{}}},{"name":"BF.12","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5279"},"designation_date":{"value":"2022-07-27"},"Nextclade_pango":{"value":"BF.12"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8628501767100625}},"branch_attrs":{"mutations":{"nuc":["G23018A"],"S":["V486I"]},"labels":{"aa":"S: V486I","spike_mutations":"V486I"}}},{"name":"BF.14","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-08-16"},"Nextclade_pango":{"value":"BF.14"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.0836336994676667}},"branch_attrs":{"mutations":{"nuc":["C16726T","A22910G"],"ORF1b":["H1087Y"],"S":["N450D"]},"labels":{"aa":"ORF1b: H1087Y; S: N450D","spike_mutations":"N450D"}}},{"name":"BF.17","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BF.17"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.385027796002946}},"branch_attrs":{"mutations":{"nuc":["T1570C","G8903A"],"ORF1a":["D2880N"]},"labels":{"aa":"ORF1a: D2880N"}}},{"name":"BF.18","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BF.18"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.08868018326049}},"branch_attrs":{"mutations":{"nuc":["G25489T"],"ORF3a":["A33S"]},"labels":{"aa":"ORF3a: A33S"}}},{"name":"BF.19","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BF.19"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810810068096922}},"branch_attrs":{"mutations":{"nuc":["C9223T","C19017T","G22200A","C28695T"],"N":["T141I"],"S":["G213E"]},"labels":{"aa":"N: T141I; S: G213E","spike_mutations":"G213E"}}},{"name":"BF.30","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BF.30"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.000753302991087}},"branch_attrs":{"mutations":{"nuc":["C3330T","C7945T","C9559T","C12789T","C14599T","G22599C","C25916T"],"ORF1a":["T1022I","T4175I"],"ORF3a":["T175I"],"S":["R346T"]},"labels":{"aa":"ORF1a: T1022I, T4175I; ORF3a: T175I; S: R346T","spike_mutations":"R346T"}}},{"name":"BF.33","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6461962433206553"},"partiallyAliased":{"value":"BA.5.2.1.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6034899999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BF.33"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731263003376903}},"branch_attrs":{"mutations":{"nuc":["C10834T","A15812G","C20762T","G22599T","T22942G"],"ORF1b":["N782S","T2432I"],"S":["R346I","N460K"]},"labels":{"aa":"ORF1b: N782S, T2432I; S: R346I, N460K","spike_mutations":"R346I, N460K"}}},{"name":"BF.4","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-25"},"Nextclade_pango":{"value":"BF.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5403712130288487}},"branch_attrs":{"mutations":{"nuc":["A22337G"],"S":["T259A"]},"labels":{"aa":"S: T259A","spike_mutations":"T259A"}}},{"name":"BF.6","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-14"},"Nextclade_pango":{"value":"BF.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.935044873522545}},"branch_attrs":{"mutations":{"nuc":["C18084T","G22104C"],"S":["G181A"]},"labels":{"aa":"S: G181A","spike_mutations":"G181A"}}},{"name":"BF.8","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BF.8"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4427033276393906}},"branch_attrs":{"mutations":{"nuc":["C29358A"],"N":["T362K"]},"labels":{"aa":"N: T362K"}}},{"name":"NODE_0000206","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.2.1.31"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.31"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.183705999853839}},"branch_attrs":{"mutations":{"nuc":["C23758T"]}},"children":[{"name":"BF.31","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-11-01"},"Nextclade_pango":{"value":"BF.31"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.183705999853839}},"branch_attrs":{"mutations":{}}},{"name":"BF.31.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.31.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-11-01"},"Nextclade_pango":{"value":"BF.31.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.333728297794076}},"branch_attrs":{"mutations":{"nuc":["C14724T","G18651A","G22302-","T22303-","T22304-","C23664T","C28013T","C28744T"],"S":["S247-","Y248N","A701V"]},"labels":{"aa":"S: S247-, Y248N, A701V","spike_mutations":"S247-, Y248N, A701V"}}}]},{"name":"internal_f84b","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.2.1.39"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.39"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.014164684543725}},"branch_attrs":{"mutations":{"nuc":["G1C","G22104T"],"S":["G181V"]},"labels":{"aa":"S: G181V","spike_mutations":"G181V"}},"children":[{"name":"BF.39","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.39"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.39"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.014164684543725}},"branch_attrs":{"mutations":{}}},{"name":"BF.39.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6146603640773621"},"partiallyAliased":{"value":"BA.5.2.1.39.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.33263"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.39.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.72330162882601}},"branch_attrs":{"mutations":{"nuc":["T2290C","C11833T","G16700T","T22896C","A22910G","C29675T"],"ORF1b":["R1078L"],"S":["V445A","N450D"]},"labels":{"aa":"ORF1b: R1078L; S: V445A, N450D","spike_mutations":"V445A, N450D"}}}]},{"name":"internal_a7a7","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.2.1.41"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.41"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.124233464905166}},"branch_attrs":{"mutations":{"nuc":["C27883T"],"ORF7b":["A43V"]},"labels":{"aa":"ORF7b: A43V"}},"children":[{"name":"BF.41","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.41"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.41"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.124233464905166}},"branch_attrs":{"mutations":{}}},{"name":"BF.41.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.41.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.41.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.749061573650758}},"branch_attrs":{"mutations":{"nuc":["C678T","G10943A","G22599C","C23893T"],"ORF1a":["A138V","V3560I"],"S":["R346T"]},"labels":{"aa":"ORF1a: A138V, V3560I; S: R346T","spike_mutations":"R346T"}}}]},{"name":"NODE_0000209","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.1.11"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.11"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.538323398719725}},"branch_attrs":{"mutations":{"nuc":["C140T","G22599C","C26151T","T28271C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BF.11","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-07-25"},"Nextclade_pango":{"value":"BF.11"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.538323398719725}},"branch_attrs":{"mutations":{}}},{"name":"BF.11.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.11.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1387514991522245}},"branch_attrs":{"mutations":{"nuc":["C25317T"],"S":["S1252F"]},"labels":{"aa":"S: S1252F","spike_mutations":"S1252F"}}},{"name":"BF.11.4","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.11.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.11.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.526789159009637}},"branch_attrs":{"mutations":{"nuc":["C23673T"],"S":["S704L"]},"labels":{"aa":"S: S704L","spike_mutations":"S704L"}}},{"name":"BF.11.5","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.11.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.11.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.333722084904922}},"branch_attrs":{"mutations":{"nuc":["A1856G","C6190T","G22225T","T28255A"],"ORF1a":["S531G"],"ORF8":["I121N"]},"labels":{"aa":"ORF1a: S531G; ORF8: I121N"}}},{"name":"NODE_0000210","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.1.11"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.11"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.580259610274661}},"branch_attrs":{"mutations":{"nuc":["C27389T"]}},"children":[{"name":"BF.11.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.11.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.11.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.240310114451193}},"branch_attrs":{"mutations":{"nuc":["T3541C","A6467C","C14877T","G21255C","A22003C","C27998T"],"ORF1a":["T2068P"],"S":["K147N"]},"labels":{"aa":"ORF1a: T2068P; S: K147N","spike_mutations":"K147N"}}},{"name":"BF.11.3","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.11.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.11.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.476394304020439}},"branch_attrs":{"mutations":{"nuc":["C629T"],"ORF1a":["L122F"]},"labels":{"aa":"ORF1a: L122F"}}}]}]},{"name":"NODE_0000211","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.7568727319042505}},"branch_attrs":{"mutations":{"nuc":["T6979G"]}},"children":[{"name":"BF.2","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BF.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.749161382059495}},"branch_attrs":{"mutations":{"nuc":["G14398T"],"ORF1b":["V311L"]},"labels":{"aa":"ORF1b: V311L"}}},{"name":"BF.28","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BF.28"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.177455157565232}},"branch_attrs":{"mutations":{"nuc":["A396T"],"ORF1a":["Q44L"]},"labels":{"aa":"ORF1a: Q44L"}}},{"name":"BF.35","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.1.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.35"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032665811269405}},"branch_attrs":{"mutations":{"nuc":["T2454G","C4921T","T9727C","C12789T","G15138T","A22910G","C25452T","C27434T","C29509T"],"ORF1a":["L730R","T4175I"],"ORF1b":["M557I"],"ORF7a":["T14I"],"S":["N450D"]},"labels":{"aa":"ORF1a: L730R, T4175I; ORF1b: M557I; ORF7a: T14I; S: N450D","spike_mutations":"N450D"}}},{"name":"BF.36","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.36"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.805542508971896}},"branch_attrs":{"mutations":{"nuc":["A761G","C17285T","C17750T"],"ORF1a":["S166G"],"ORF1b":["S1273L","A1428V"]},"labels":{"aa":"ORF1a: S166G; ORF1b: S1273L, A1428V"}}},{"name":"BF.9","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BF.9"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4768065526712655}},"branch_attrs":{"mutations":{"nuc":["G5555A","G9220A","G11053C","C16859T","C21727T","C28651T"],"ORF1a":["G1764S","Q3596H"],"ORF1b":["A1131V"]},"labels":{"aa":"ORF1a: G1764S, Q3596H; ORF1b: A1131V"}}},{"name":"NODE_0000212","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.4245961854732196}},"branch_attrs":{"mutations":{"nuc":["T4690C","G21520T","C22879T"],"ORF1b":["V2685F"]},"labels":{"aa":"ORF1b: V2685F"}},"children":[{"name":"BF.1","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-02"},"Nextclade_pango":{"value":"BF.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4245961854732196}},"branch_attrs":{"mutations":{}}},{"name":"BF.1.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BF.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.484503927075209}},"branch_attrs":{"mutations":{"nuc":["G526T","T3038C","A3213G","G10835A","G11837T","C13297T"],"ORF1a":["E87D","Y925H","D983G","V3524I","V3858L"]},"labels":{"aa":"ORF1a: E87D, Y925H, D983G, V3524I, V3858L"}}}]},{"name":"NODE_0000213","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2.1.10"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.10"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.120061673896527}},"branch_attrs":{"mutations":{"nuc":["C17339T","C28310T"],"N":["L13F"],"ORF1b":["A1291V"]},"labels":{"aa":"N: L13F; ORF1b: A1291V"}},"children":[{"name":"BF.10","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BF.10"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.120061673896527}},"branch_attrs":{"mutations":{}}},{"name":"BF.10.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5857111385129393"},"partiallyAliased":{"value":"BA.5.2.1.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.3218"},"designation_date":{"value":"2022-12-18"},"Nextclade_pango":{"value":"BF.10.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.866927007603129}},"branch_attrs":{"mutations":{"nuc":["C22591T","T22896C","G22898A","A29824T"],"S":["V445A","G446S"]},"labels":{"aa":"S: V445A, G446S","spike_mutations":"V445A, G446S"}}}]},{"name":"NODE_0000214","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.144339570059547}},"branch_attrs":{"mutations":{"nuc":["C26625T","C27371T"],"ORF6":["P57L"]},"labels":{"aa":"ORF6: P57L"}},"children":[{"name":"BF.15","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-21"},"Nextclade_pango":{"value":"BF.15"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.236107733861962}},"branch_attrs":{"mutations":{"nuc":["T22304C"],"S":["Y248H"]},"labels":{"aa":"S: Y248H","spike_mutations":"Y248H"}}},{"name":"BF.20","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BF.20"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.568065297722572}},"branch_attrs":{"mutations":{"nuc":["C7086A"],"ORF1a":["T2274N"]},"labels":{"aa":"ORF1a: T2274N"}}}]},{"name":"NODE_0000215","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.790566378257354}},"branch_attrs":{"mutations":{"nuc":["C28087A"],"ORF8":["A65D"]},"labels":{"aa":"ORF8: A65D"}},"children":[{"name":"BF.21","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BF.21"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.147786873154956}},"branch_attrs":{"mutations":{"nuc":["C936T","C2189T","A3069G","C25916T"],"ORF1a":["T224I","L642F","D935G"],"ORF3a":["T175I"]},"labels":{"aa":"ORF1a: T224I, L642F, D935G; ORF3a: T175I"}}},{"name":"BF.27","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BF.27"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3087774022965006}},"branch_attrs":{"mutations":{"nuc":["C8616T","C21114T"],"ORF1a":["A2784V"]},"labels":{"aa":"ORF1a: A2784V"}}}]},{"name":"NODE_0000216","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.455536820870864}},"branch_attrs":{"mutations":{"nuc":["A3859G"]}},"children":[{"name":"BF.13","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5513799999999999"},"designation_date":{"value":"2022-08-15"},"Nextclade_pango":{"value":"BF.13"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.781419165853493}},"branch_attrs":{"mutations":{"nuc":["A8031G","A19337G","A22600T","T24079C","G26196A"],"ORF1a":["K2589R"],"ORF1b":["K1957R"],"S":["R346S"]},"labels":{"aa":"ORF1a: K2589R; ORF1b: K1957R; S: R346S","spike_mutations":"R346S"}}},{"name":"BF.16","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45785000000000003"},"designation_date":{"value":"2022-08-23"},"Nextclade_pango":{"value":"BF.16"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.301109482784748}},"branch_attrs":{"mutations":{"nuc":["T11177C","A22893G"],"S":["K444R"]},"labels":{"aa":"S: K444R","spike_mutations":"K444R"}}},{"name":"BF.22","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-31"},"Nextclade_pango":{"value":"BF.22"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9622346512502746}},"branch_attrs":{"mutations":{"nuc":["A9343G","T23269C","C28419T","C29409T"],"N":["T49I","T379I"]},"labels":{"aa":"N: T49I, T379I"}}},{"name":"BF.25","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.2.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2022-09-22"},"Nextclade_pango":{"value":"BF.25"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5010122863853312}},"branch_attrs":{"mutations":{"nuc":["C18657T","T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"BF.29","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-12"},"Nextclade_pango":{"value":"BF.29"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.759423785191389}},"branch_attrs":{"mutations":{"nuc":["T26171A","G26172A"],"ORF3a":["M260K"]},"labels":{"aa":"ORF3a: M260K"}}},{"name":"BF.34","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-08"},"Nextclade_pango":{"value":"BF.34"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.144234442049878}},"branch_attrs":{"mutations":{"nuc":["C21516T","G22599C","G23499A","G25737T"],"ORF3a":["L115F"],"S":["R346T","R646H"]},"labels":{"aa":"ORF3a: L115F; S: R346T, R646H","spike_mutations":"R346T, R646H"}}}]},{"name":"NODE_0000217","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.643205500507501}},"branch_attrs":{"mutations":{"nuc":["G24620T"],"S":["A1020S"]},"labels":{"aa":"S: A1020S","spike_mutations":"A1020S"}},"children":[{"name":"BF.23","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-15"},"Nextclade_pango":{"value":"BF.23"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.628983553380841}},"branch_attrs":{"mutations":{"nuc":["C4784T","C17076A"],"ORF1a":["L1507F"]},"labels":{"aa":"ORF1a: L1507F"}}},{"name":"internal_faef","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2.1.3"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.3"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.250125724406628}},"branch_attrs":{"mutations":{"nuc":["C23202T"],"S":["T547I"]},"labels":{"aa":"S: T547I","spike_mutations":"T547I"}},"children":[{"name":"BF.3","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BF.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.250125724406628}},"branch_attrs":{"mutations":{}}},{"name":"BF.3.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"BA.5.2.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.48889999999999995"},"designation_date":{"value":"2022-07-27"},"Nextclade_pango":{"value":"BF.3.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.175023890640625}},"branch_attrs":{"mutations":{"nuc":["G22898A","C27549T"],"S":["G446S"]},"labels":{"aa":"S: G446S","spike_mutations":"G446S"}}}]},{"name":"internal_3b8c","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.842229055289558}},"branch_attrs":{"mutations":{"nuc":["C9967T"]}},"children":[{"name":"BF.24","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-19"},"Nextclade_pango":{"value":"BF.24"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7227635606027096}},"branch_attrs":{"mutations":{"nuc":["G2177T"],"ORF1a":["G638C"]},"labels":{"aa":"ORF1a: G638C"}}},{"name":"NODE_0000220","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.1.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.2208121016075655}},"branch_attrs":{"mutations":{"nuc":["C19524T","C27532T"],"ORF7a":["H47Y"]},"labels":{"aa":"ORF7a: H47Y"}},"children":[{"name":"BF.5","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-01"},"Nextclade_pango":{"value":"BF.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2208121016075655}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000221","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.1.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.75715732781051}},"branch_attrs":{"mutations":{"nuc":["A28402G"],"ORF9b":["K40R"]},"labels":{"aa":"ORF9b: K40R"}},"children":[{"name":"BF.5.5","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.5.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"BF.5.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.516084047856}},"branch_attrs":{"mutations":{"nuc":["A22003T"],"S":["K147N"]},"labels":{"aa":"S: K147N","spike_mutations":"K147N"}}},{"name":"NODE_0000222","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.1.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.0685054423975764}},"branch_attrs":{"mutations":{"nuc":["A8882G"],"ORF1a":["I2873V"]},"labels":{"aa":"ORF1a: I2873V"}},"children":[{"name":"BF.5.1","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-12-27"},"Nextclade_pango":{"value":"BF.5.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.215897117231356}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}},{"name":"NODE_0000223","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.2.1.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.606859245592803}},"branch_attrs":{"mutations":{"nuc":["C16954T"]}},"children":[{"name":"BF.5.4","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.5.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"BF.5.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.847635586279267}},"branch_attrs":{"mutations":{"nuc":["A11781G"],"ORF1a":["K3839R"]},"labels":{"aa":"ORF1a: K3839R"}}},{"name":"NODE_0000224","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.2.1.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.305612284433229}},"branch_attrs":{"mutations":{"nuc":["C29077T"]}},"children":[{"name":"BF.5.2","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.2.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2022-12-27"},"Nextclade_pango":{"value":"BF.5.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.953517603860297}},"branch_attrs":{"mutations":{"nuc":["C44T","C11668T","T22896C","T23443C","C27393T"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"BF.5.3","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-08"},"Nextclade_pango":{"value":"BF.5.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.9074680814626355}},"branch_attrs":{"mutations":{"nuc":["T1965C","T2158C","G3719A","A7863G","C9442T","T11045C","C12915T","G16360A","A20463G","A20472G","C21178T","G21372A","T22090C","T22711C","C23170T","C24964T","C25702T","A28877T","G28878C"],"ORF1a":["I567T","G1152S","K2533R","T4217I"],"ORF1b":["V965I","H2571Y"],"ORF3a":["P104S"]},"labels":{"aa":"ORF1a: I567T, G1152S, K2533R, T4217I; ORF1b: V965I, H2571Y; ORF3a: P104S"}}}]}]}]}]}]}]}]}]},{"name":"NODE_0000225","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.5935700650825524}},"branch_attrs":{"mutations":{"nuc":["G28361T","G28371T"],"N":["G30-","-33F"],"ORF9b":["M26-","-29I","V30L"]},"labels":{"aa":"N: G30-, -33F; ORF9b: M26-, -29I, V30L"}},"children":[{"name":"BF.42","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.42"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-04-11"},"Nextclade_pango":{"value":"BF.42"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":60},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254418855715381}},"branch_attrs":{"mutations":{"nuc":["C1059T","C1968T","C8025T","C12068T","A12820G","C16608T","C17747T","C21054T","A21137G","T27792-","A28008G"],"ORF1a":["T265I","T568I","A2587V"],"ORF1b":["P1427L","K2557R"],"ORF7b":["F13-"],"ORF8":["I39V"]},"labels":{"aa":"ORF1a: T265I, T568I, A2587V; ORF1b: P1427L, K2557R; ORF7b: F13-; ORF8: I39V"}}},{"name":"internal_928a","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.383333705742499}},"branch_attrs":{"mutations":{"nuc":["C5284T"]}},"children":[{"name":"BF.26","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BF.26"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.1697947552392542}},"branch_attrs":{"mutations":{"nuc":["G14593A"],"ORF1b":["G376S"]},"labels":{"aa":"ORF1b: G376S"}}},{"name":"BF.32","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-11-01"},"Nextclade_pango":{"value":"BF.32"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.36059316940858}},"branch_attrs":{"mutations":{"nuc":["C4920A","G15451A","A22910G"],"ORF1a":["T1552N"],"ORF1b":["G662S"],"S":["N450D"]},"labels":{"aa":"ORF1a: T1552N; ORF1b: G662S; S: N450D","spike_mutations":"N450D"}}},{"name":"BF.37","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"BA.5.2.1.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.35979999999999995"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.37"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.592366384578093}},"branch_attrs":{"mutations":{"nuc":["C3096T","T7855C","G22899A"],"ORF1a":["S944L"],"S":["G446D"]},"labels":{"aa":"ORF1a: S944L; S: G446D","spike_mutations":"G446D"}}},{"name":"BF.40","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.2.1.40"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.40"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.329615119231951}},"branch_attrs":{"mutations":{"nuc":["G3838A","T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}}]},{"name":"internal_1cd3","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2.1.38"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.38"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.287770374476042}},"branch_attrs":{"mutations":{"nuc":["C17304T"]}},"children":[{"name":"BF.38","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.38"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.287770374476042}},"branch_attrs":{"mutations":{}}},{"name":"BF.38.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.38.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.38.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.884223730098797}},"branch_attrs":{"mutations":{"nuc":["C44T","C25162A","C25163A"],"S":["Q1201K"]},"labels":{"aa":"S: Q1201K","spike_mutations":"Q1201K"}}},{"name":"BF.38.2","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.2.1.38.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.38.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.112039770139194}},"branch_attrs":{"mutations":{"nuc":["C15277T","T22896C"],"ORF1b":["H604Y"],"S":["V445A"]},"labels":{"aa":"ORF1b: H604Y; S: V445A","spike_mutations":"V445A"}}},{"name":"BF.38.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.1.38.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.38.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"frameShifts":{"value":"ORF8:122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36352372759101}},"branch_attrs":{"mutations":{"nuc":["T1582C","C6395T","T11122C","C25046T","C25416T","C28087T","A28254-"],"ORF8":["A65V","I121-"],"S":["P1162S"]},"labels":{"aa":"ORF8: A65V, I121-; S: P1162S","spike_mutations":"P1162S"}}}]},{"name":"NODE_0000228","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.1.7"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.823403747200986}},"branch_attrs":{"mutations":{"nuc":["G1T","C7528T","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BF.7","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-07-16"},"Nextclade_pango":{"value":"BF.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.823403747200986}},"branch_attrs":{"mutations":{}}},{"name":"BF.7.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-05"},"Nextclade_pango":{"value":"BF.7.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.130039302428008}},"branch_attrs":{"mutations":{"nuc":["G22344T"],"S":["G261V"]},"labels":{"aa":"S: G261V","spike_mutations":"G261V"}}},{"name":"BF.7.10","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.10"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6071457739304424}},"branch_attrs":{"mutations":{"nuc":["C44T","C25162A","C25163A"],"S":["Q1201K"]},"labels":{"aa":"S: Q1201K","spike_mutations":"Q1201K"}}},{"name":"BF.7.11","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.11"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.907707604939226}},"branch_attrs":{"mutations":{"nuc":["C2842T","A14475G","G25340T"],"S":["D1260Y"]},"labels":{"aa":"S: D1260Y","spike_mutations":"D1260Y"}}},{"name":"BF.7.12","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.12"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6119976421475775}},"branch_attrs":{"mutations":{"nuc":["G24386T"],"S":["A942S"]},"labels":{"aa":"S: A942S","spike_mutations":"A942S"}}},{"name":"BF.7.15","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BF.7.15"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5642496244901087}},"branch_attrs":{"mutations":{"nuc":["C5700T","G22332A"],"ORF1a":["A1812V"],"S":["G257D"]},"labels":{"aa":"ORF1a: A1812V; S: G257D","spike_mutations":"G257D"}}},{"name":"BF.7.17","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.7.17"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305612284433229}},"branch_attrs":{"mutations":{"nuc":["C4719T","A16687G","C23625T","G25061A"],"ORF1a":["A1485V"],"ORF1b":["I1074V"],"S":["A688V","G1167S"]},"labels":{"aa":"ORF1a: A1485V; ORF1b: I1074V; S: A688V, G1167S","spike_mutations":"A688V, G1167S"}}},{"name":"BF.7.18","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.7.18"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.615433519847196}},"branch_attrs":{"mutations":{"nuc":["C44T","G21853T"],"S":["K97N"]},"labels":{"aa":"S: K97N","spike_mutations":"K97N"}}},{"name":"BF.7.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6393200000000001"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BF.7.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9500091753383035}},"branch_attrs":{"mutations":{"nuc":["G23018A","C24863T","C25919T"],"ORF3a":["T176I"],"S":["V486I","H1101Y"]},"labels":{"aa":"ORF3a: T176I; S: V486I, H1101Y","spike_mutations":"V486I, H1101Y"}}},{"name":"BF.7.20","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.20"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.766100498617997}},"branch_attrs":{"mutations":{"nuc":["G15543T"]}}},{"name":"BF.7.21","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.21"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9021861728896106}},"branch_attrs":{"mutations":{"nuc":["A6058G","C28603T"]}}},{"name":"BF.7.22","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.22"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.96443327652882}},"branch_attrs":{"mutations":{"nuc":["T9107C","T27794C","G28134A"],"ORF8":["V81I"]},"labels":{"aa":"ORF8: V81I"}}},{"name":"BF.7.23","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.23"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.029372607936585}},"branch_attrs":{"mutations":{"nuc":["C14183T"],"ORF1b":["T239I"]},"labels":{"aa":"ORF1b: T239I"}}},{"name":"BF.7.24","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.24"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.959107386915955}},"branch_attrs":{"mutations":{"nuc":["T10939C"]}}},{"name":"BF.7.26","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.26"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.045499560619344}},"branch_attrs":{"mutations":{"nuc":["G20679A"]}}},{"name":"BF.7.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"BF.7.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4434146240119}},"branch_attrs":{"mutations":{"nuc":["C44T","C15951T","A22106G","C29870A"],"S":["K182E"]},"labels":{"aa":"S: K182E","spike_mutations":"K182E"}}},{"name":"BF.7.6","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.615695421825965}},"branch_attrs":{"mutations":{"nuc":["A2692T","C15540T","G26109T"],"ORF3a":["E239D"]},"labels":{"aa":"ORF3a: E239D"}}},{"name":"BF.7.7","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.199974749013608}},"branch_attrs":{"mutations":{"nuc":["A11506G","C20436T","A21801G","A29868G"],"S":["D80G"]},"labels":{"aa":"S: D80G","spike_mutations":"D80G"}}},{"name":"BF.7.8","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.8"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2448530303053955}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"BF.7.9","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.9"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.905738294338552}},"branch_attrs":{"mutations":{"nuc":["T22615C","G23593T","C26681T"],"S":["Q677H"]},"labels":{"aa":"S: Q677H","spike_mutations":"Q677H"}}},{"name":"NODE_0000229","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.1.7.16"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.16"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.757053283425212}},"branch_attrs":{"mutations":{"nuc":["C1758T","T2080C"],"ORF1a":["A498V"]},"labels":{"aa":"ORF1a: A498V"}},"children":[{"name":"BF.7.16","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.7.16"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.757053283425212}},"branch_attrs":{"mutations":{}}},{"name":"BF.7.16.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.16.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BF.7.16.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.287887425594363}},"branch_attrs":{"mutations":{"nuc":["C6633T","C22792T","C23625T"],"ORF1a":["A2123V"],"S":["A688V"]},"labels":{"aa":"ORF1a: A2123V; S: A688V","spike_mutations":"A688V"}}}]},{"name":"NODE_0000230","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.1.7.19"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.19"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.2525726207994685}},"branch_attrs":{"mutations":{"nuc":["A27747C"],"ORF7a":["R118S"]},"labels":{"aa":"ORF7a: R118S"}},"children":[{"name":"BF.7.19","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.19"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2525726207994685}},"branch_attrs":{"mutations":{}}},{"name":"BF.7.19.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.19.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BF.7.19.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.140603458632937}},"branch_attrs":{"mutations":{"nuc":["C1915T","T7111C","C16470T","A26219G","C28153T"],"ORF8":["T87I"]},"labels":{"aa":"ORF8: T87I"}}}]},{"name":"NODE_0000231","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.2.1.7.5"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.5"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.7386385410033545}},"branch_attrs":{"mutations":{"nuc":["A17622G","C17747T","A28777G"],"ORF1b":["P1427L"]},"labels":{"aa":"ORF1b: P1427L"}},"children":[{"name":"BF.7.5","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7386385410033545}},"branch_attrs":{"mutations":{}}},{"name":"BF.7.5.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-13"},"Nextclade_pango":{"value":"BF.7.5.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.347447575215644}},"branch_attrs":{"mutations":{"nuc":["C1288T","C2399A","T21992-","A21993-","T21994-","G22104T","C26985T"],"M":["H155Y"],"ORF1a":["H712N"],"S":["Y144-","G181V"]},"labels":{"aa":"M: H155Y; ORF1a: H712N; S: Y144-, G181V","spike_mutations":"Y144-, G181V"}}}]},{"name":"NODE_0000232","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.1.7.13"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.13"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.369395761678645}},"branch_attrs":{"mutations":{"nuc":["C1427T","C3743T"],"ORF1a":["H388Y","H1160Y"]},"labels":{"aa":"ORF1a: H388Y, H1160Y"}},"children":[{"name":"BF.7.13","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BF.7.13"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.369395761678645}},"branch_attrs":{"mutations":{}}},{"name":"BF.7.13.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6092635944504471"},"partiallyAliased":{"value":"BA.5.2.1.7.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6759999999999999"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BF.7.13.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731263003376903}},"branch_attrs":{"mutations":{"nuc":["T21462C","C22851T","C23603T"],"S":["T430I","H681Y"]},"labels":{"aa":"S: T430I, H681Y","spike_mutations":"T430I, H681Y"}}},{"name":"BF.7.13.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.13.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BF.7.13.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810810068096922}},"branch_attrs":{"mutations":{"nuc":["A3601G","C23520T","T29760C","T29867A"],"S":["A653V"]},"labels":{"aa":"S: A653V","spike_mutations":"A653V"}}}]},{"name":"NODE_0000233","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.1.7.4"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.4"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.963204317185833}},"branch_attrs":{"mutations":{"nuc":["T21483C","C27942T"],"ORF8":["H17Y"]},"labels":{"aa":"ORF8: H17Y"}},"children":[{"name":"BF.7.4","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BF.7.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.963204317185833}},"branch_attrs":{"mutations":{}}},{"name":"BF.7.4.3","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-03-10"},"Nextclade_pango":{"value":"BF.7.4.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.555570098329036}},"branch_attrs":{"mutations":{"nuc":["T1683C","C20703T","C22033A","A26927G","C27532A","G28541T"],"N":["A90S"],"ORF1a":["I473T"],"ORF7a":["H47N"],"ORF9b":["E86D"],"S":["F157L"]},"labels":{"aa":"N: A90S; ORF1a: I473T; ORF7a: H47N; ORF9b: E86D; S: F157L","spike_mutations":"F157L"}}},{"name":"NODE_0000234","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.2.1.7.4"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.4"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.7521765799422333}},"branch_attrs":{"mutations":{"nuc":["T13096C"]}},"children":[{"name":"BF.7.4.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BF.7.4.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3188433898543397}},"branch_attrs":{"mutations":{"nuc":["C9365T","C17746T","T21180C"],"ORF1b":["P1427S"]},"labels":{"aa":"ORF1b: P1427S"}}},{"name":"BF.7.4.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"BF.7.4.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.300299561745727}},"branch_attrs":{"mutations":{"nuc":["C6336T","T18700A","T21763C","C23191T"],"ORF1a":["S2024L"],"ORF1b":["S1745T"]},"labels":{"aa":"ORF1a: S2024L; ORF1b: S1745T"}}}]}]},{"name":"NODE_0000235","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.1.7"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.044324412254667}},"branch_attrs":{"mutations":{"nuc":["G14181C","C27532T"],"ORF1b":["L238F"],"ORF7a":["H47Y"]},"labels":{"aa":"ORF1b: L238F; ORF7a: H47Y"}},"children":[{"name":"BF.7.27","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BF.7.27"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.514085669473774}},"branch_attrs":{"mutations":{"nuc":["C8752T"]}}},{"name":"NODE_0000236","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.2.1.7.14"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.14"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.01883030930423}},"branch_attrs":{"mutations":{"nuc":["G1085T","G25290T","C29632T"],"ORF1a":["V274L"],"S":["C1243F"]},"labels":{"aa":"ORF1a: V274L; S: C1243F","spike_mutations":"C1243F"}},"children":[{"name":"BF.7.14","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-06"},"Nextclade_pango":{"value":"BF.7.14"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.01883030930423}},"branch_attrs":{"mutations":{}}},{"name":"BF.7.14.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-25"},"Nextclade_pango":{"value":"BF.7.14.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.312211361673167}},"branch_attrs":{"mutations":{"nuc":["A3872G","A8967C"],"ORF1a":["I1203V","K2901T"]},"labels":{"aa":"ORF1a: I1203V, K2901T"}}},{"name":"BF.7.14.4","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BF.7.14.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.475244375786141}},"branch_attrs":{"mutations":{"nuc":["C5796T","C25701T","A29868G"],"ORF1a":["T1844I"]},"labels":{"aa":"ORF1a: T1844I"}}},{"name":"BF.7.14.5","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BF.7.14.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.324655511353768}},"branch_attrs":{"mutations":{"nuc":["C20703T","A29868G"]}}},{"name":"BF.7.14.7","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-24"},"Nextclade_pango":{"value":"BF.7.14.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129553594131899}},"branch_attrs":{"mutations":{"nuc":["C44T","T11587C","C24624T"],"S":["S1021F"]},"labels":{"aa":"S: S1021F","spike_mutations":"S1021F"}}},{"name":"NODE_0000237","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.2.1.7.14"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BF.7.14"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.7625818879230595}},"branch_attrs":{"mutations":{"nuc":["G210T"]}},"children":[{"name":"BF.7.14.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BF.7.14.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.135626824380959}},"branch_attrs":{"mutations":{"nuc":["G21604T"],"S":["Q14H"]},"labels":{"aa":"S: Q14H","spike_mutations":"Q14H"}}},{"name":"BF.7.14.3","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BF.7.14.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363590274120979}},"branch_attrs":{"mutations":{"nuc":["C44T","C23439T"],"S":["A626V"]},"labels":{"aa":"S: A626V","spike_mutations":"A626V"}}},{"name":"BF.7.14.6","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.1.7.14.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"BF.7.14.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.571959846342161}},"branch_attrs":{"mutations":{"nuc":["C1973T","A29868G"]}}}]}]}]}]}]}]},{"name":"NODE_0000238","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.6050280265796815}},"branch_attrs":{"mutations":{"nuc":["G12310A"]}},"children":[{"name":"BA.5.2.23","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.2.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2022-09-20"},"Nextclade_pango":{"value":"BA.5.2.23"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.819330351580752}},"branch_attrs":{"mutations":{"nuc":["A4576T","T4579A","C22326T","T22896C"],"S":["S255F","V445A"]},"labels":{"aa":"S: S255F, V445A","spike_mutations":"S255F, V445A"}}},{"name":"BA.5.2.4","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-01"},"Nextclade_pango":{"value":"BA.5.2.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.160418515284046}},"branch_attrs":{"mutations":{"nuc":["C23202T"],"S":["T547I"]},"labels":{"aa":"S: T547I","spike_mutations":"T547I"}}},{"name":"BA.5.2.40","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.40"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BA.5.2.40"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606428161196393}},"branch_attrs":{"mutations":{"nuc":["G1148T","A17406G","C18252T","G19666T","C21575T","A22910G"],"ORF1a":["G295C"],"ORF1b":["D2067Y"],"S":["L5F","N450D"]},"labels":{"aa":"ORF1a: G295C; ORF1b: D2067Y; S: L5F, N450D","spike_mutations":"L5F, N450D"}}},{"name":"BA.5.2.5","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"BA.5.2.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.891730320431409}},"branch_attrs":{"mutations":{"nuc":["G3606T","C3903T","C10138T","C11454T","T18429C","T27053C"],"ORF1a":["C1114F","P1213L","A3730V"]},"labels":{"aa":"ORF1a: C1114F, P1213L, A3730V"}}},{"name":"BA.5.2.9","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.2.9"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.9682506495047107}},"branch_attrs":{"mutations":{"nuc":["C10369T","A15002G"],"ORF1b":["Y512C"]},"labels":{"aa":"ORF1b: Y512C"}}},{"name":"NODE_0000239","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.26555552072358}},"branch_attrs":{"mutations":{"nuc":["C16616A"],"ORF1b":["T1050N"]},"labels":{"aa":"ORF1b: T1050N"}},"children":[{"name":"BA.5.2.10","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.2.10"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.53070499593492}},"branch_attrs":{"mutations":{"nuc":["G3514T","G28646A"],"N":["A125T"],"ORF1a":["M1083I"]},"labels":{"aa":"N: A125T; ORF1a: M1083I"}}},{"name":"BA.5.2.2","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BA.5.2.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5487712675922176}},"branch_attrs":{"mutations":{"nuc":["G20356A","C29510A"],"N":["R413S"],"ORF1b":["G2297S"]},"labels":{"aa":"N: R413S; ORF1b: G2297S"}}},{"name":"NODE_0000240","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.2.26"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.26"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.859076364859403}},"branch_attrs":{"mutations":{"nuc":["C25714G"],"ORF3a":["L108V"]},"labels":{"aa":"ORF3a: L108V"}},"children":[{"name":"BA.5.2.26","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BA.5.2.26"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.859076364859403}},"branch_attrs":{"mutations":{}}},{"name":"CG.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.26.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.36874999999999986"},"designation_date":{"value":"2022-10-03"},"Nextclade_pango":{"value":"CG.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.281072785832121}},"branch_attrs":{"mutations":{"nuc":["C4824T","A22893T","C24133T","C27143T"],"ORF1a":["S1520F"],"S":["K444M"]},"labels":{"aa":"ORF1a: S1520F; S: K444M","spike_mutations":"K444M"}}}]},{"name":"NODE_0000241","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.18990837149294}},"branch_attrs":{"mutations":{"nuc":["C27012T","C27513T"]}},"children":[{"name":"BA.5.2.22","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-20"},"Nextclade_pango":{"value":"BA.5.2.22"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.522163020965573}},"branch_attrs":{"mutations":{"nuc":["C3330T"],"ORF1a":["T1022I"]},"labels":{"aa":"ORF1a: T1022I"}}},{"name":"BA.5.2.28","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BA.5.2.28"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2162139288196396}},"branch_attrs":{"mutations":{"nuc":["C4575T"],"ORF1a":["T1437I"]},"labels":{"aa":"ORF1a: T1437I"}}},{"name":"BA.5.2.29","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.2.29"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4501164046032144}},"branch_attrs":{"mutations":{"nuc":["T6218C","C13517T"],"ORF1b":["T17I"]},"labels":{"aa":"ORF1b: T17I"}}},{"name":"BA.5.2.45","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.45"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5131699999999999"},"designation_date":{"value":"2022-12-03"},"Nextclade_pango":{"value":"BA.5.2.45"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.000076697259005}},"branch_attrs":{"mutations":{"nuc":["T239C","C21595T","A22892C","C25710T","C27557T"],"ORF7a":["A55V"],"S":["K444Q"]},"labels":{"aa":"ORF7a: A55V; S: K444Q","spike_mutations":"K444Q"}}},{"name":"BA.5.2.52","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.52"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.52"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.196374799980282}},"branch_attrs":{"mutations":{"nuc":["G6443A","A22910G"],"ORF1a":["D2060N"],"S":["N450D"]},"labels":{"aa":"ORF1a: D2060N; S: N450D","spike_mutations":"N450D"}}},{"name":"BA.5.2.55","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.55"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.55"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9650886786336277}},"branch_attrs":{"mutations":{"nuc":["C5548A"]}}},{"name":"BA.5.2.59","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.59"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.59"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.314713923244738}},"branch_attrs":{"mutations":{"nuc":["C10138T","G25352T"],"S":["V1264L"]},"labels":{"aa":"S: V1264L","spike_mutations":"V1264L"}}},{"name":"NODE_0000242","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.33"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.33"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.983844398170498}},"branch_attrs":{"mutations":{"nuc":["C28170T"],"ORF8":["P93S"]},"labels":{"aa":"ORF8: P93S"}},"children":[{"name":"BA.5.2.33","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.2.33"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.983844398170498}},"branch_attrs":{"mutations":{}}},{"name":"CE.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.33.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39901000000000003"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"CE.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.418686190546701}},"branch_attrs":{"mutations":{"nuc":["G22599T"],"S":["R346I"]},"labels":{"aa":"S: R346I","spike_mutations":"R346I"}}}]},{"name":"NODE_0000243","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.49"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.49"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.596241812125212}},"branch_attrs":{"mutations":{"nuc":["A14673G","T16456C","C24210T","G29810T"],"ORF1b":["S997P"],"S":["T883I"]},"labels":{"aa":"ORF1b: S997P; S: T883I","spike_mutations":"T883I"}},"children":[{"name":"BA.5.2.49","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.49"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BA.5.2.49"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.596241812125212}},"branch_attrs":{"mutations":{}}},{"name":"DZ.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.49.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"DZ.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.497556058832246}},"branch_attrs":{"mutations":{"nuc":["C8626T","G11266T","T13698C","G24998T"],"ORF1a":["L3667F"],"S":["D1146Y"]},"labels":{"aa":"ORF1a: L3667F; S: D1146Y","spike_mutations":"D1146Y"}}},{"name":"DZ.2","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.49.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-31"},"Nextclade_pango":{"value":"DZ.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.77680937024483}},"branch_attrs":{"mutations":{"nuc":["C44T","C8950T","G21786T"],"S":["G75V"]},"labels":{"aa":"S: G75V","spike_mutations":"G75V"}}}]}]},{"name":"ORF1b1050_internal","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.18990837149294}},"branch_attrs":{"mutations":{"nuc":["C27012T","C27513T"]}},"children":[{"name":"BA.5.2.12","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.2.12"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.451158577279559}},"branch_attrs":{"mutations":{"nuc":["C29358T"],"N":["T362I"]},"labels":{"aa":"N: T362I"}}},{"name":"BA.5.2.13","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-06"},"Nextclade_pango":{"value":"BA.5.2.13"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.632423035108696}},"branch_attrs":{"mutations":{"nuc":["A13136G","C13264T","G22599C"],"ORF1a":["I4291V"],"S":["R346T"]},"labels":{"aa":"ORF1a: I4291V; S: R346T","spike_mutations":"R346T"}}},{"name":"BA.5.2.14","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.36874999999999986"},"designation_date":{"value":"2022-09-06"},"Nextclade_pango":{"value":"BA.5.2.14"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.388898024347801}},"branch_attrs":{"mutations":{"nuc":["C6720T","T16617C","G21753T","A22893T","G29422T"],"ORF1a":["T2152I"],"S":["W64L","K444M"]},"labels":{"aa":"ORF1a: T2152I; S: W64L, K444M","spike_mutations":"W64L, K444M"}}},{"name":"BA.5.2.19","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BA.5.2.19"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8671295046543452}},"branch_attrs":{"mutations":{"nuc":["C25433T"],"ORF3a":["T14I"]},"labels":{"aa":"ORF3a: T14I"}}},{"name":"BA.5.2.30","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"BA.5.2.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.35979999999999995"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.2.30"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.666583873297046}},"branch_attrs":{"mutations":{"nuc":["C8605T","G22899A"],"S":["G446D"]},"labels":{"aa":"S: G446D","spike_mutations":"G446D"}}},{"name":"BA.5.2.34","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-12"},"Nextclade_pango":{"value":"BA.5.2.34"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4810407682346387}},"branch_attrs":{"mutations":{"nuc":["G18079T","G22599C","G23587A"],"ORF1b":["V1538L"],"S":["R346T"]},"labels":{"aa":"ORF1b: V1538L; S: R346T","spike_mutations":"R346T"}}},{"name":"BA.5.2.35","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BA.5.2.35"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.620741221080676}},"branch_attrs":{"mutations":{"nuc":["C7006T","T16617C","G22599C","G28423C"],"ORF9b":["R47P"],"S":["R346T"]},"labels":{"aa":"ORF9b: R47P; S: R346T","spike_mutations":"R346T"}}},{"name":"BA.5.2.37","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-17"},"Nextclade_pango":{"value":"BA.5.2.37"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.388743738524737}},"branch_attrs":{"mutations":{"nuc":["G6943T","T21995C"],"S":["Y145H"]},"labels":{"aa":"S: Y145H","spike_mutations":"Y145H"}}},{"name":"BA.5.2.39","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.39"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BA.5.2.39"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.967654695264281}},"branch_attrs":{"mutations":{"nuc":["C44T","C1471T","T2698C","C4543T","T8662C","A12976T","G22599C","A29700G"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}},{"name":"BA.5.2.42","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.42"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45952999999999994"},"designation_date":{"value":"2022-11-23"},"Nextclade_pango":{"value":"BA.5.2.42"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004631142816721}},"branch_attrs":{"mutations":{"nuc":["C1426T","C7011T","C11750T","C17012T","A22893C","T24352C","C24503A","C26873T"],"ORF1a":["A2249V","L3829F"],"ORF1b":["S1182L"],"S":["K444T","L981I"]},"labels":{"aa":"ORF1a: A2249V, L3829F; ORF1b: S1182L; S: K444T, L981I","spike_mutations":"K444T, L981I"}}},{"name":"BA.5.2.43","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5696198980975616"},"partiallyAliased":{"value":"BA.5.2.43"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5642800000000001"},"designation_date":{"value":"2022-11-26"},"Nextclade_pango":{"value":"BA.5.2.43"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.017600600861851}},"branch_attrs":{"mutations":{"nuc":["C5301T","C15933T","G22899A","T22942G"],"ORF1a":["A1679V"],"S":["G446D","N460K"]},"labels":{"aa":"ORF1a: A1679V; S: G446D, N460K","spike_mutations":"G446D, N460K"}}},{"name":"BA.5.2.44","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.44"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-11-29"},"Nextclade_pango":{"value":"BA.5.2.44"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.052548423366883}},"branch_attrs":{"mutations":{"nuc":["C7955T"],"ORF1a":["L2564F"]},"labels":{"aa":"ORF1a: L2564F"}}},{"name":"BA.5.2.46","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.46"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-12-30"},"Nextclade_pango":{"value":"BA.5.2.46"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.01975658125957}},"branch_attrs":{"mutations":{"nuc":["A1793G","A22893C","T22942G","C26681T","T29867A"],"ORF1a":["K510E"],"S":["K444T","N460K"]},"labels":{"aa":"ORF1a: K510E; S: K444T, N460K","spike_mutations":"K444T, N460K"}}},{"name":"BA.5.2.53","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.53"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.53"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.308763727934946}},"branch_attrs":{"mutations":{"nuc":["T17928C","C23520T"],"S":["A653V"]},"labels":{"aa":"S: A653V","spike_mutations":"A653V"}}},{"name":"BA.5.2.54","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.54"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.54"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3370101945576955}},"branch_attrs":{"mutations":{"nuc":["C11020T","A22910G"],"S":["N450D"]},"labels":{"aa":"S: N450D","spike_mutations":"N450D"}}},{"name":"BA.5.2.57","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.57"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5513799999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.57"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7557769778058625}},"branch_attrs":{"mutations":{"nuc":["A22600T"],"S":["R346S"]},"labels":{"aa":"S: R346S","spike_mutations":"R346S"}}},{"name":"BA.5.2.58","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.58"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5513799999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.58"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.197953995476185}},"branch_attrs":{"mutations":{"nuc":["C9565T","C11479T","C12085T","A22600T"],"S":["R346S"]},"labels":{"aa":"S: R346S","spike_mutations":"R346S"}}},{"name":"BA.5.2.61","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.61"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BA.5.2.61"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.77887202100326}},"branch_attrs":{"mutations":{"nuc":["A19676T","A22910G","G29706C"],"ORF1b":["Q2070L"],"S":["N450D"]},"labels":{"aa":"ORF1b: Q2070L; S: N450D","spike_mutations":"N450D"}}},{"name":"BA.5.2.62","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.62"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BA.5.2.62"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.237876152480363}},"branch_attrs":{"mutations":{"nuc":["C23520T"],"S":["A653V"]},"labels":{"aa":"S: A653V","spike_mutations":"A653V"}}},{"name":"BA.5.2.63","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.63"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-02-14"},"Nextclade_pango":{"value":"BA.5.2.63"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004244993904329}},"branch_attrs":{"mutations":{"nuc":["G2407A","C2485T","C2592T","C5646T","C8752T","T21992-","A21993-","T21994-","G22894T","T22942A","A27293G","C29733-","-29759T"],"ORF1a":["A776V","T1794I"],"ORF6":["Y31C"],"S":["Y144-","K444N","N460K"]},"labels":{"aa":"ORF1a: A776V, T1794I; ORF6: Y31C; S: Y144-, K444N, N460K","spike_mutations":"Y144-, K444N, N460K"}}},{"name":"BA.5.2.8","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.2.8"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9465737385357538}},"branch_attrs":{"mutations":{"nuc":["G8872T","T19305C"],"ORF1a":["L2869F"]},"labels":{"aa":"ORF1a: L2869F"}}},{"name":"internal_236a","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.36009363665646}},"branch_attrs":{"mutations":{"nuc":["C27294T"]}},"children":[{"name":"BA.5.2.11","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BA.5.2.11"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.24635842360805}},"branch_attrs":{"mutations":{"nuc":["C15951T","C25693G"],"ORF3a":["L101V"]},"labels":{"aa":"ORF3a: L101V"}}},{"name":"BA.5.2.32","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.2.32"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.503468929787016}},"branch_attrs":{"mutations":{"nuc":["A22910G","C28153T"],"ORF8":["T87I"],"S":["N450D"]},"labels":{"aa":"ORF8: T87I; S: N450D","spike_mutations":"N450D"}}}]},{"name":"internal_f0ba","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.27"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.27"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.7933229370722286}},"branch_attrs":{"mutations":{"nuc":["A7259G"],"ORF1a":["I2332V"]},"labels":{"aa":"ORF1a: I2332V"}},"children":[{"name":"BA.5.2.27","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-29"},"Nextclade_pango":{"value":"BA.5.2.27"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7933229370722286}},"branch_attrs":{"mutations":{}}},{"name":"CF.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.27.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"CF.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.151196131380373}},"branch_attrs":{"mutations":{"nuc":["A21852C"],"S":["K97T"]},"labels":{"aa":"S: K97T","spike_mutations":"K97T"}}}]},{"name":"internal_1651","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.36"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.36"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.188043716905034}},"branch_attrs":{"mutations":{"nuc":["A22893C"],"S":["K444T"]},"labels":{"aa":"S: K444T","spike_mutations":"K444T"}},"children":[{"name":"BA.5.2.36","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45952999999999994"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BA.5.2.36"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.188043716905034}},"branch_attrs":{"mutations":{}}},{"name":"CT.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8348090082863573"},"partiallyAliased":{"value":"BA.5.2.36.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4564899999999999"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"CT.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.26066831511712}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","A22629C","G29212T"],"S":["Y144-","K356T"]},"labels":{"aa":"S: Y144-, K356T","spike_mutations":"Y144-, K356T"}}}]},{"name":"internal_a10d","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.38"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.38"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.397924160586163}},"branch_attrs":{"mutations":{"nuc":["C22851T"],"S":["T430I"]},"labels":{"aa":"S: T430I","spike_mutations":"T430I"}},"children":[{"name":"BA.5.2.38","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3931466019920671"},"partiallyAliased":{"value":"BA.5.2.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.56458"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BA.5.2.38"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.397924160586163}},"branch_attrs":{"mutations":{}}},{"name":"DA.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6092635944504471"},"partiallyAliased":{"value":"BA.5.2.38.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6759999999999999"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"DA.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9811745167604675}},"branch_attrs":{"mutations":{"nuc":["C478T","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}}]},{"name":"NODE_0000249","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.015661797157143}},"branch_attrs":{"mutations":{"nuc":["A22893G"]}},"children":[{"name":"BA.5.2.41","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.41"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45785000000000003"},"designation_date":{"value":"2022-11-13"},"Nextclade_pango":{"value":"BA.5.2.41"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.664890438004474}},"branch_attrs":{"mutations":{"nuc":["C8655T"],"ORF1a":["S2797F"],"S":["K444R"]},"labels":{"aa":"ORF1a: S2797F; S: K444R","spike_mutations":"K444R"}}},{"name":"BA.5.2.56","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.56"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.36874999999999986"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.56"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.058211286847232}},"branch_attrs":{"mutations":{"nuc":["G22893T"],"S":["K444M"]},"labels":{"aa":"S: K444M","spike_mutations":"K444M"}}}]},{"name":"internal_ea0e","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.47"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.47"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.307579582204385}},"branch_attrs":{"mutations":{"nuc":["C12616T","G22599C","C24745T"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.5.2.47","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.47"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-01"},"Nextclade_pango":{"value":"BA.5.2.47"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.307579582204385}},"branch_attrs":{"mutations":{}}},{"name":"DQ.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.47.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-01"},"Nextclade_pango":{"value":"DQ.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5098143450282855}},"branch_attrs":{"mutations":{"nuc":["C6781T","T12673G","C19011T","A22003T"],"S":["K147N"]},"labels":{"aa":"S: K147N","spike_mutations":"K147N"}}}]},{"name":"NODE_0000251","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.20"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.20"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.091133449037685}},"branch_attrs":{"mutations":{"nuc":["C23707T"]}},"children":[{"name":"BA.5.2.20","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BA.5.2.20"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.091133449037685}},"branch_attrs":{"mutations":{}}},{"name":"BV.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.20.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BV.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.765125276238453}},"branch_attrs":{"mutations":{"nuc":["C22314A","G24603A","C27059T"],"S":["P251H","R1014K"]},"labels":{"aa":"S: P251H, R1014K","spike_mutations":"P251H, R1014K"}}},{"name":"BV.2","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.20.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.40293000000000007"},"designation_date":{"value":"2022-09-23"},"Nextclade_pango":{"value":"BV.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.325303972366909}},"branch_attrs":{"mutations":{"nuc":["G22894T"],"S":["K444N"]},"labels":{"aa":"S: K444N","spike_mutations":"K444N"}}}]},{"name":"internal_d5b0","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.21"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.21"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.447872452841183}},"branch_attrs":{"mutations":{"nuc":["C5284T"]}},"children":[{"name":"BA.5.2.21","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-18"},"Nextclade_pango":{"value":"BA.5.2.21"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.447872452841183}},"branch_attrs":{"mutations":{}}},{"name":"CN.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.21.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-10-12"},"Nextclade_pango":{"value":"CN.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.254254892678271}},"branch_attrs":{"mutations":{"nuc":["A22910G","C25626T"],"S":["N450D"]},"labels":{"aa":"S: N450D","spike_mutations":"N450D"}}},{"name":"CN.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.21.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-12-15"},"Nextclade_pango":{"value":"CN.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.452911413829289}},"branch_attrs":{"mutations":{"nuc":["A17943G","T18345C","T21644C","G22599C"],"S":["Y28H","R346T"]},"labels":{"aa":"S: Y28H, R346T","spike_mutations":"Y28H, R346T"}}}]},{"name":"internal_6217","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.3"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.3"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.546541918934428}},"branch_attrs":{"mutations":{"nuc":["G625T","G2305A"],"ORF1a":["K120N"]},"labels":{"aa":"ORF1a: K120N"}},"children":[{"name":"BA.5.2.3","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BA.5.2.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.546541918934428}},"branch_attrs":{"mutations":{}}},{"name":"BZ.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-21"},"Nextclade_pango":{"value":"BZ.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.023112424307435}},"branch_attrs":{"mutations":{"nuc":["G315A","G17331T","G23593C","C28657T"],"ORF1a":["S17N"],"ORF1b":["E1288D"],"S":["Q677H"]},"labels":{"aa":"ORF1a: S17N; ORF1b: E1288D; S: Q677H","spike_mutations":"Q677H"}}},{"name":"BZ.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BZ.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8854074272419385}},"branch_attrs":{"mutations":{"nuc":["C8645T","C16887T","A22910G"],"ORF1a":["H2794Y"],"S":["N450D"]},"labels":{"aa":"ORF1a: H2794Y; S: N450D","spike_mutations":"N450D"}}}]},{"name":"internal_74ef","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.31"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.31"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.136946714297421}},"branch_attrs":{"mutations":{"nuc":["C21812A"],"S":["L84I"]},"labels":{"aa":"S: L84I","spike_mutations":"L84I"}},"children":[{"name":"BA.5.2.31","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BA.5.2.31"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.136946714297421}},"branch_attrs":{"mutations":{}}},{"name":"CD.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"BA.5.2.31.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.35979999999999995"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"CD.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.225601941355886}},"branch_attrs":{"mutations":{"nuc":["C44T","G22899A","G23624A"],"S":["G446D","A688T"]},"labels":{"aa":"S: G446D, A688T","spike_mutations":"G446D, A688T"}}},{"name":"CD.2","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.38661183056048837"},"partiallyAliased":{"value":"BA.5.2.31.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5594199999999998"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"CD.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004631142816721}},"branch_attrs":{"mutations":{"nuc":["C6558T","G22865T","G28703A"],"N":["D144N"],"ORF1a":["A2098V"],"S":["A435S"]},"labels":{"aa":"N: D144N; ORF1a: A2098V; S: A435S","spike_mutations":"A435S"}}}]},{"name":"NODE_0000255","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.012876954755027}},"branch_attrs":{"mutations":{"nuc":["C18647T"],"ORF1b":["P1727L"]},"labels":{"aa":"ORF1b: P1727L"}},"children":[{"name":"BA.5.2.50","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.50"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-21"},"Nextclade_pango":{"value":"BA.5.2.50"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.752659760395259}},"branch_attrs":{"mutations":{"nuc":["C7728T"],"ORF1a":["S2488F"]},"labels":{"aa":"ORF1a: S2488F"}}},{"name":"BA.5.2.51","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.51"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45785000000000003"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BA.5.2.51"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032777248943862}},"branch_attrs":{"mutations":{"nuc":["A22893G","C29095T"],"S":["K444R"]},"labels":{"aa":"S: K444R","spike_mutations":"K444R"}}},{"name":"BA.5.2.60","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.60"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"BA.5.2.60"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.760171445481757}},"branch_attrs":{"mutations":{"nuc":["A11760G","A22910G"],"ORF1a":["K3832R"],"S":["N450D"]},"labels":{"aa":"ORF1a: K3832R; S: N450D","spike_mutations":"N450D"}}}]},{"name":"NODE_0000256","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.7"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.7"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.098864153020359}},"branch_attrs":{"mutations":{"nuc":["T2058C","C17958T","A22893T"],"ORF1a":["M598T"],"S":["K444M"]},"labels":{"aa":"ORF1a: M598T; S: K444M","spike_mutations":"K444M"}},"children":[{"name":"BA.5.2.7","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.36874999999999986"},"designation_date":{"value":"2022-08-21"},"Nextclade_pango":{"value":"BA.5.2.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.098864153020359}},"branch_attrs":{"mutations":{}}},{"name":"CY.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.57323"},"designation_date":{"value":"2022-11-01"},"Nextclade_pango":{"value":"CY.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.415039510257165}},"branch_attrs":{"mutations":{"nuc":["C44T","T22942G","G27933A"],"ORF8":["A14T"],"S":["N460K"]},"labels":{"aa":"ORF8: A14T; S: N460K","spike_mutations":"N460K"}}},{"name":"CY.2","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.7.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.36874999999999986"},"designation_date":{"value":"2023-02-28"},"Nextclade_pango":{"value":"CY.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828556169664857}},"branch_attrs":{"mutations":{"nuc":["C106T","C3619T","C3695T","T7734G","C16954T","C18312T","C24759A","C28331T"],"N":["P20S"],"ORF1a":["I2490S"],"S":["T1066N"]},"labels":{"aa":"N: P20S; ORF1a: I2490S; S: T1066N","spike_mutations":"T1066N"}}}]},{"name":"NODE_0000257","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.16"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.16"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.167087269738523}},"branch_attrs":{"mutations":{"nuc":["C11355T"],"ORF1a":["A3697V"]},"labels":{"aa":"ORF1a: A3697V"}},"children":[{"name":"BA.5.2.16","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-14"},"Nextclade_pango":{"value":"BA.5.2.16"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.167087269738523}},"branch_attrs":{"mutations":{}}},{"name":"BU.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.16.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.57323"},"designation_date":{"value":"2022-09-16"},"Nextclade_pango":{"value":"BU.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.168752065635678}},"branch_attrs":{"mutations":{"nuc":["C10335T","T21992-","A21993-","T21994-","A22893T","T22942G"],"ORF1a":["A3357V"],"S":["Y144-","K444M","N460K"]},"labels":{"aa":"ORF1a: A3357V; S: Y144-, K444M, N460K","spike_mutations":"Y144-, K444M, N460K"}}},{"name":"internal_2ba3","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.16"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.16"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.774855729809832}},"branch_attrs":{"mutations":{"nuc":["C16332T","C25658T"],"ORF3a":["T89I"]},"labels":{"aa":"ORF3a: T89I"}},"children":[{"name":"BU.2","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.2.16.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BU.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.02499652044098}},"branch_attrs":{"mutations":{"nuc":["T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"BU.3","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.2.16.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-10-23"},"Nextclade_pango":{"value":"BU.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.545470170794193}},"branch_attrs":{"mutations":{"nuc":["T3960C","C18747T","A22003T","A22910G"],"ORF1a":["I1232T"],"S":["K147N","N450D"]},"labels":{"aa":"ORF1a: I1232T; S: K147N, N450D","spike_mutations":"K147N, N450D"}}}]}]},{"name":"internal_28cf","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.25"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.25"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.447854951251119}},"branch_attrs":{"mutations":{"nuc":["C1471T","T2698C","A22893C","A29700G"],"S":["K444T"]},"labels":{"aa":"S: K444T","spike_mutations":"K444T"}},"children":[{"name":"BA.5.2.25","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45952999999999994"},"designation_date":{"value":"2022-09-25"},"Nextclade_pango":{"value":"BA.5.2.25"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.447854951251119}},"branch_attrs":{"mutations":{}}},{"name":"DB.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.2.25.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"DB.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.369756091002144}},"branch_attrs":{"mutations":{"nuc":["C22450T","G22599C","T22942G","C27741T"],"S":["R346T","N460K"]},"labels":{"aa":"S: R346T, N460K","spike_mutations":"R346T, N460K"}}},{"name":"DB.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.25.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45952999999999994"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"DB.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.248650803573753}},"branch_attrs":{"mutations":{"nuc":["G22346T"],"S":["A262S"]},"labels":{"aa":"S: A262S","spike_mutations":"A262S"}}},{"name":"DB.3","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.2.25.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-23"},"Nextclade_pango":{"value":"DB.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208018891174064}},"branch_attrs":{"mutations":{"nuc":["C44T","C1348T","A2182G","C2334T","T14565G","T16950A","C18744T","G19542T","T21992-","A21993-","T21994-","G22599C","T22942A","C26151T","G28109A"],"ORF1a":["A690V"],"ORF1b":["M2025I"],"S":["Y144-","R346T","N460K"]},"labels":{"aa":"ORF1a: A690V; ORF1b: M2025I; S: Y144-, R346T, N460K","spike_mutations":"Y144-, R346T, N460K"}}}]},{"name":"NODE_0000260","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.18"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.18"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.015661797157143}},"branch_attrs":{"mutations":{"nuc":["A22893G"],"S":["K444R"]},"labels":{"aa":"S: K444R","spike_mutations":"K444R"}},"children":[{"name":"BA.5.2.18","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45785000000000003"},"designation_date":{"value":"2022-09-17"},"Nextclade_pango":{"value":"BA.5.2.18"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.015661797157143}},"branch_attrs":{"mutations":{}}},{"name":"CR.2","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.18.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45785000000000003"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"CR.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828535360852687}},"branch_attrs":{"mutations":{"nuc":["T21995C"],"S":["Y145H"]},"labels":{"aa":"S: Y145H","spike_mutations":"Y145H"}}},{"name":"NODE_0000261","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.18.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CR.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.689684175941948}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","G22599C"],"S":["Y144-","R346T"]},"labels":{"aa":"S: Y144-, R346T","spike_mutations":"Y144-, R346T"}},"children":[{"name":"CR.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.7787021841865673"},"partiallyAliased":{"value":"BA.5.2.18.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5692699999999998"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"CR.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.689684175941948}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000262","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.18.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CR.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.43658406757796}},"branch_attrs":{"mutations":{"nuc":["G15957T","C29730-","A29731-","C29732-","C29733-","T29760-","A29761-","C29762-","A29763-","G29764-","T29765-","G29766-","A29767-","A29768-","C29769-","A29770-","A29771-"]}},"children":[{"name":"CR.1.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.7787021841865673"},"partiallyAliased":{"value":"BA.5.2.18.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5692699999999998"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CR.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.214806844373574}},"branch_attrs":{"mutations":{"nuc":["C3267T","C16954T","G21746A"],"ORF1a":["T1001I"],"S":["V62I"]},"labels":{"aa":"ORF1a: T1001I; S: V62I","spike_mutations":"V62I"}}},{"name":"CR.1.2","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8220667608305177"},"partiallyAliased":{"value":"BA.5.2.18.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.40216999999999997"},"designation_date":{"value":"2022-11-05"},"Nextclade_pango":{"value":"CR.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731418209559792}},"branch_attrs":{"mutations":{"nuc":["C1593T","T22896C","C26873T","G29402T","T29728-","T29729-"],"N":["D377Y"],"ORF1a":["S443F"],"S":["V445A"]},"labels":{"aa":"N: D377Y; ORF1a: S443F; S: V445A","spike_mutations":"V445A"}}},{"name":"CR.1.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.7787021841865673"},"partiallyAliased":{"value":"BA.5.2.18.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5692699999999998"},"designation_date":{"value":"2022-12-16"},"Nextclade_pango":{"value":"CR.1.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.270857693823627}},"branch_attrs":{"mutations":{"nuc":["A8040G","C22000A","T29665C","-29771A"],"ORF1a":["D2592G"],"S":["H146Q"]},"labels":{"aa":"ORF1a: D2592G; S: H146Q","spike_mutations":"H146Q"}}}]}]}]},{"name":"NODE_0000263","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.2.48"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.48"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.152574400082965}},"branch_attrs":{"mutations":{"nuc":["C2710T","C8626T","C16887T","T17208C"]}},"children":[{"name":"BA.5.2.48","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.48"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-06"},"Nextclade_pango":{"value":"BA.5.2.48"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.152574400082965}},"branch_attrs":{"mutations":{}}},{"name":"DY.4","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.48.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"DY.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7077411801892035}},"branch_attrs":{"mutations":{"nuc":["C20762T","A29868G"],"ORF1b":["T2432I"]},"labels":{"aa":"ORF1b: T2432I"}}},{"name":"NODE_0000264","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.2.48.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"DY.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.185999993977373}},"branch_attrs":{"mutations":{"nuc":["C44T","G23270T"],"S":["A570S"]},"labels":{"aa":"S: A570S","spike_mutations":"A570S"}},"children":[{"name":"DY.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.48.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"DY.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.185999993977373}},"branch_attrs":{"mutations":{}}},{"name":"DY.1.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.48.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-01-31"},"Nextclade_pango":{"value":"DY.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305612284433229}},"branch_attrs":{"mutations":{"nuc":["A1208G","C18377T","A22001G"],"ORF1a":["M315V"],"ORF1b":["T1637I"],"S":["K147E"]},"labels":{"aa":"ORF1a: M315V; ORF1b: T1637I; S: K147E","spike_mutations":"K147E"}}}]},{"name":"NODE_0000265","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.2.48"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.48"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.8188400826518527}},"branch_attrs":{"mutations":{"nuc":["C11824T"]}},"children":[{"name":"DY.2","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.48.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"DY.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.532790996968169}},"branch_attrs":{"mutations":{"nuc":["C28994A","A29868G"],"N":["Q241K"]},"labels":{"aa":"N: Q241K"}}},{"name":"DY.3","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.2.48.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"DY.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9110355354127866}},"branch_attrs":{"mutations":{"nuc":["C4573T","C5628T"],"ORF1a":["T1788M"]},"labels":{"aa":"ORF1a: T1788M"}}}]}]},{"name":"internal_7385","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.6"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.6"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.191543774781307}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BA.5.2.6","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-08-21"},"Nextclade_pango":{"value":"BA.5.2.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.191543774781307}},"branch_attrs":{"mutations":{}}},{"name":"CP.2","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6402691070822483"},"partiallyAliased":{"value":"BA.5.2.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6942999999999999"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CP.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3166191725169}},"branch_attrs":{"mutations":{"nuc":["G15025A","T21992-","A21993-","T21994-","C22564A","C23707T"],"ORF1b":["A520T"],"S":["Y144-","N334K"]},"labels":{"aa":"ORF1b: A520T; S: Y144-, N334K","spike_mutations":"Y144-, N334K"}}},{"name":"CP.3","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6461962433206553"},"partiallyAliased":{"value":"BA.5.2.6.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.38661"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CP.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.811500108517835}},"branch_attrs":{"mutations":{"nuc":["A10323G","A22940T"],"ORF1a":["K3353R"],"S":["N460Y"]},"labels":{"aa":"ORF1a: K3353R; S: N460Y","spike_mutations":"N460Y"}}},{"name":"CP.4","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CP.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5893007579233664}},"branch_attrs":{"mutations":{"nuc":["C1387T","A13327G","A23870G"],"S":["I770V"]},"labels":{"aa":"S: I770V","spike_mutations":"I770V"}}},{"name":"CP.5","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CP.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.639779252863143}},"branch_attrs":{"mutations":{"nuc":["G25302T"],"S":["C1247F"]},"labels":{"aa":"S: C1247F","spike_mutations":"C1247F"}}},{"name":"CP.6","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CP.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.4532799822514075}},"branch_attrs":{"mutations":{"nuc":["T10330C","G25352T","T26485-","T26486-"],"S":["V1264L"]},"labels":{"aa":"S: V1264L","spike_mutations":"V1264L"}}},{"name":"CP.7","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-03-02"},"Nextclade_pango":{"value":"CP.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.731672804638093}},"branch_attrs":{"mutations":{"nuc":["C44T","T809C","T7831C","A23669T","A25531G","T26270C","T27384C","G27516T","G28048T"],"E":["I9T"],"ORF1a":["Y182H"],"ORF3a":["I47V"],"ORF7a":["E41D"],"ORF8":["R52I"],"S":["N703Y"]},"labels":{"aa":"E: I9T; ORF1a: Y182H; ORF3a: I47V; ORF7a: E41D; ORF8: R52I; S: N703Y","spike_mutations":"N703Y"}}},{"name":"internal_7ebe","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.2.6.8"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CP.8"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.717194242089881}},"branch_attrs":{"mutations":{"nuc":["C15240T","A15486G","A19283G","C28651T"],"ORF1b":["D1939G"]},"labels":{"aa":"ORF1b: D1939G"}},"children":[{"name":"CP.8","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"CP.8"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.717194242089881}},"branch_attrs":{"mutations":{}}},{"name":"CP.8.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-03-23"},"Nextclade_pango":{"value":"CP.8.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731418209559792}},"branch_attrs":{"mutations":{"nuc":["C3140T","C3619T","C6255T","G6662A","C18568A","C23997G"],"ORF1a":["P959S","A1997V","V2133I"],"ORF1b":["L1701I"],"S":["P812R"]},"labels":{"aa":"ORF1a: P959S, A1997V, V2133I; ORF1b: L1701I; S: P812R","spike_mutations":"P812R"}}}]},{"name":"NODE_0000268","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.6.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CP.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.439924424553888}},"branch_attrs":{"mutations":{"nuc":["T26485-","T26486-","T27360C","T28240-","T28241-"],"ORF8":["V116-"]},"labels":{"aa":"ORF8: V116-"}},"children":[{"name":"CP.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"CP.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"frameShifts":{"value":"ORF8:117-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.439924424553888}},"branch_attrs":{"mutations":{}}},{"name":"CP.1.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.7360939491355138"},"partiallyAliased":{"value":"BA.5.2.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5026299999999999"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"CP.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"frameShifts":{"value":"ORF8:117-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.845720303321896}},"branch_attrs":{"mutations":{"nuc":["T8704C","T22896C","C27389T","T29524C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"CP.1.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.2.6.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CP.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"frameShifts":{"value":"ORF8:117-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062659251597256}},"branch_attrs":{"mutations":{"nuc":["C829T","C6606T","T6703C","A22012C"],"ORF1a":["S2114F"],"S":["K150N"]},"labels":{"aa":"ORF1a: S2114F; S: K150N","spike_mutations":"K150N"}}},{"name":"CP.1.3","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"BA.5.2.6.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6003199999999999"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"CP.1.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"frameShifts":{"value":"ORF8:117-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208622250419278}},"branch_attrs":{"mutations":{"nuc":["C11355T","A12064G","T21992-","A21993-","T21994-","G22898A"],"ORF1a":["A3697V"],"S":["Y144-","G446S"]},"labels":{"aa":"ORF1a: A3697V; S: Y144-, G446S","spike_mutations":"Y144-, G446S"}}}]}]},{"name":"NODE_0000269","node_attrs":{"div":20,"partiallyAliased":{"value":"BA.5.2.24"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.2.24"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.049880715359295}},"branch_attrs":{"mutations":{"nuc":["G22894T"],"S":["K444N"]},"labels":{"aa":"S: K444N","spike_mutations":"K444N"}},"children":[{"name":"BA.5.2.24","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.40293000000000007"},"designation_date":{"value":"2022-09-22"},"Nextclade_pango":{"value":"BA.5.2.24"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.049880715359295}},"branch_attrs":{"mutations":{}}},{"name":"CK.3","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-11-14"},"Nextclade_pango":{"value":"CK.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.301051769452735}},"branch_attrs":{"mutations":{"nuc":["T22942A","C27509T"],"ORF7a":["T39I"],"S":["N460K"]},"labels":{"aa":"ORF7a: T39I; S: N460K","spike_mutations":"N460K"}}},{"name":"internal_36cf","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.24.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CK.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.834918102425568}},"branch_attrs":{"mutations":{"nuc":["G26428T"],"E":["V62F"]},"labels":{"aa":"E: V62F"}},"children":[{"name":"CK.2","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.2.24.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.40293000000000007"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"CK.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.834918102425568}},"branch_attrs":{"mutations":{}}},{"name":"internal_3525","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.24.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CK.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.506054352195956}},"branch_attrs":{"mutations":{"nuc":["T22942G"],"S":["N460K"]},"labels":{"aa":"S: N460K","spike_mutations":"N460K"}},"children":[{"name":"CK.2.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"CK.2.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.506054352195956}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000272","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.2.24.2.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CK.2.1.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.1055604147046365}},"branch_attrs":{"mutations":{"nuc":["G2393A","C8389T","G10998A","C13423T","C22326T"],"ORF1a":["V710I","G3578D"],"S":["S255F"]},"labels":{"aa":"ORF1a: V710I, G3578D; S: S255F","spike_mutations":"S255F"}},"children":[{"name":"CK.2.1.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"CK.2.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1055604147046365}},"branch_attrs":{"mutations":{}}},{"name":"DG.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.2.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-11-09"},"Nextclade_pango":{"value":"DG.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.751395517371638}},"branch_attrs":{"mutations":{"nuc":["G22316A"],"S":["G252S"]},"labels":{"aa":"S: G252S","spike_mutations":"G252S"}}}]}]}]},{"name":"NODE_0000273","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.2.24.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CK.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.126582228154306}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","T22942G"],"S":["Y144-","N460K"]},"labels":{"aa":"S: Y144-, N460K","spike_mutations":"Y144-, N460K"}},"children":[{"name":"CK.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"CK.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.126582228154306}},"branch_attrs":{"mutations":{"nuc":["-21992T","-21993A","-21994T"],"S":["-144Y"]},"labels":{"aa":"S: -144Y","spike_mutations":"-144Y"}}},{"name":"NODE_0000274","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.24.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CK.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.023652968547823}},"branch_attrs":{"mutations":{"nuc":["G22104T"],"S":["G181V"]},"labels":{"aa":"S: G181V","spike_mutations":"G181V"}},"children":[{"name":"CK.1.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.2.24.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.71883"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"CK.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.031522988487648}},"branch_attrs":{"mutations":{"nuc":["C8655T","-21992T","-21993A","-21994T","G22599C","G23383A"],"ORF1a":["S2797F"],"S":["-144Y","R346T"]},"labels":{"aa":"ORF1a: S2797F; S: -144Y, R346T","spike_mutations":"-144Y, R346T"}}},{"name":"CK.1.3","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"CK.1.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.660207637944207}},"branch_attrs":{"mutations":{"nuc":["C22033A"],"S":["F157L"]},"labels":{"aa":"S: F157L","spike_mutations":"F157L"}}}]},{"name":"NODE_0000275","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.24.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CK.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.576330875806531}},"branch_attrs":{"mutations":{"nuc":["C25614T"]}},"children":[{"name":"CK.1.4","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"CK.1.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.222020191065355}},"branch_attrs":{"mutations":{"nuc":["C10228T","T25519C","C25824T","C27741T"],"ORF3a":["F43L"]},"labels":{"aa":"ORF3a: F43L"}}},{"name":"CK.1.5","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"CK.1.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.430306828338304}},"branch_attrs":{"mutations":{"nuc":["C9118T","A11462G","C15951T"],"ORF1a":["M3733V"]},"labels":{"aa":"ORF1a: M3733V"}}}]},{"name":"NODE_0000276","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.2.24.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CK.1.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.9886272404827645}},"branch_attrs":{"mutations":{"nuc":["A24129G"],"S":["N856S"]},"labels":{"aa":"S: N856S","spike_mutations":"N856S"}},"children":[{"name":"CK.1.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-12-29"},"Nextclade_pango":{"value":"CK.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9886272404827645}},"branch_attrs":{"mutations":{}}},{"name":"CK.1.1.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"CK.1.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363590274120979}},"branch_attrs":{"mutations":{"nuc":["C5628T","G6742T","C8782T","G23522A"],"ORF1a":["T1788M"],"S":["E654K"]},"labels":{"aa":"ORF1a: T1788M; S: E654K","spike_mutations":"E654K"}}},{"name":"CK.1.1.2","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.2.24.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"CK.1.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828556169664857}},"branch_attrs":{"mutations":{"nuc":["C44T","G25352T","C26907T","A27753C"],"S":["V1264L"]},"labels":{"aa":"S: V1264L","spike_mutations":"V1264L"}}}]}]}]}]}]}]}]}]},{"name":"NODE_0000277","node_attrs":{"div":13,"partiallyAliased":{"value":"BA.5.3"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.3"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.120831115886555}},"branch_attrs":{"mutations":{"nuc":["C1931A"],"ORF1a":["Q556K"]},"labels":{"aa":"ORF1a: Q556K"}},"children":[{"name":"BA.5.3","node_attrs":{"div":13,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-05-29"},"Nextclade_pango":{"value":"BA.5.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.120831115886555}},"branch_attrs":{"mutations":{}}},{"name":"BA.5.3.3","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":36},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BA.5.3.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"frameShifts":{"value":"ORF7a:72-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7528762315293944}},"branch_attrs":{"mutations":{"nuc":["T2C","G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","C6843T","G27556-","C27557-","A27558-","C27559-","T27560-","G27561-","A27562-","C27563-","T27564-","T27565-","G27566-","C27567-","T27568-","T27569-","T27570-","A27571-","G27572-","C27573-","A27574-","C27575-","T27576-","C27577-","A27578-","A27579-","T27580-","T27581-","T27582-","G27583-","C27584-","T27585-","T27586-","T27587-","T27588-","G27589-","C27590-","T27591-","T27592-","G27593-","T27594-","C27595-","C27596-","T27597-","G27598-","A27599-","C27600-","G27601-","G27602-","C27603-","G27604-","T27605-"],"ORF1a":["G82-","H83-","V84-","M85-","V86-","S2193F"],"ORF7a":["A55-","L56-","T57-","C58-","F59-","S60-","T61-","Q62-","F63-","A64-","F65-","A66-","C67-","P68-","D69-","G70-","V71-"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-, S2193F; ORF7a: A55-, L56-, T57-, C58-, F59-, S60-, T61-, Q62-, F63-, A64-, F65-, A66-, C67-, P68-, D69-, G70-, V71-"}}},{"name":"BA.5.3.5","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":36},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-07"},"Nextclade_pango":{"value":"BA.5.3.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.260499052466834}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","C13252T","G22599C","C27389T","G27556-","C27557-","A27558-","C27559-","T27560-","G27561-","A27562-","C27563-","T27564-","T27565-","G27566-","C27567-","T27568-","T27569-","T27570-","A27571-","G27572-","C27573-","A27574-","C27575-","T27576-","C27577-","A27578-","A27579-","T27580-","T27581-","T27582-","G27583-","C27584-","T27585-","T27586-","T27587-","T27588-","G27589-","C27590-","T27591-","T27592-","G27593-","T27594-","C27595-","C27596-","T27597-","G27598-","A27599-","C27600-","G27601-","G27602-","C27603-","G27604-","T27605-","A27606-"],"ORF1a":["G82-","H83-","V84-","M85-","V86-"],"ORF7a":["A55-","L56-","T57-","C58-","F59-","S60-","T61-","Q62-","F63-","A64-","F65-","A66-","C67-","P68-","D69-","G70-","V71-"],"S":["R346T"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-; ORF7a: A55-, L56-, T57-, C58-, F59-, S60-, T61-, Q62-, F63-, A64-, F65-, A66-, C67-, P68-, D69-, G70-, V71-; S: R346T","spike_mutations":"R346T"}}},{"name":"NODE_0000278","node_attrs":{"div":14,"partiallyAliased":{"value":"BA.5.3"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.3"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.7477837537410537}},"branch_attrs":{"mutations":{"nuc":["C11074T"]}},"children":[{"name":"BA.5.3.2","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-13"},"Nextclade_pango":{"value":"BA.5.3.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7888086357735067}},"branch_attrs":{"mutations":{"nuc":["G621A"],"ORF1a":["R119H"]},"labels":{"aa":"ORF1a: R119H"}}},{"name":"BA.5.3.4","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BA.5.3.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.258236246775843}},"branch_attrs":{"mutations":{"nuc":["G20718T"],"ORF1b":["M2417I"]},"labels":{"aa":"ORF1b: M2417I"}}}]},{"name":"NODE_0000279","node_attrs":{"div":14,"partiallyAliased":{"value":"BA.5.3.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.3.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.247209202528485}},"branch_attrs":{"mutations":{"nuc":["G28681T"],"N":["E136D"]},"labels":{"aa":"N: E136D"}},"children":[{"name":"BA.5.3.1","node_attrs":{"div":14,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-05-31"},"Nextclade_pango":{"value":"BA.5.3.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.247209202528485}},"branch_attrs":{"mutations":{}}},{"name":"BE.10","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-12-15"},"Nextclade_pango":{"value":"BE.10"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7855516818328554}},"branch_attrs":{"mutations":{"nuc":["C486T","C8730T","T11997C","C12919T","T14367C","A22893C","T22942G","C26681T","C27393T"],"ORF1a":["S74L","S2822F","M3911T"],"S":["K444T","N460K"]},"labels":{"aa":"ORF1a: S74L, S2822F, M3911T; S: K444T, N460K","spike_mutations":"K444T, N460K"}}},{"name":"BE.3","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-01"},"Nextclade_pango":{"value":"BE.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.22163012903978}},"branch_attrs":{"mutations":{"nuc":["A17207G","C17304T","C28724T"],"N":["P151S"],"ORF1b":["Y1247C"]},"labels":{"aa":"N: P151S; ORF1b: Y1247C"}}},{"name":"BE.5","node_attrs":{"div":14,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BE.5"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.247209202528485}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000280","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.3.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.3.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.38214944225331}},"branch_attrs":{"mutations":{"nuc":["A518-","G22599C","A27512-","C27513-","G27514-","A27515-","G27516-","G27517-","G27518-","C27519-","A27520-","A27521-","T27522-","T27523-","C27524-","A27525-","C27526-","C27527-","A27528-","T27529-","T27530-","T27531-","C27532-","A27533-","T27534-","C27535-","C27536-","T27537-","C27538-","T27539-","A27540-","G27541-","C27542-","T27543-","G27544-","A27545-","T27546-","A27547-","A27548-","C27549-","A27550-","A27551-","A27552-","T27553-","T27554-","T27555-","G27556-","C27557-","A27558-","C27559-","T27560-","G27561-","A27562-","C27563-","T27564-","T27565-","G27566-","C27567-","T27568-","T27569-","T27570-","A27571-","G27572-","C27573-","A27574-","C27575-","T27576-","C27577-","A27578-","A27579-","T27580-","T27581-","T27582-","G27583-","C27584-","T27585-","T27586-","T27587-","T27588-","G27589-","C27590-","T27591-","T27592-","G27593-","T27594-","C27595-","C27596-","T27597-","G27598-","A27599-","C27600-","G27601-","G27602-","C27603-","G27604-","T27605-","A27606-","A27607-","A27608-","A27609-","C27610-","A27611-","C27612-","G27613-","T27614-","C27615-","T27616-","A27617-","T27618-","C27619-","A27620-","G27621-","T27622-","T27623-","A27624-","C27625-","G27626-","T27627-","G27628-","C27629-","C27630-","A27631-","G27632-","A27633-","T27634-","C27635-","A27636-","G27637-","T27638-","T27639-","T27640-","C27641-","A27642-","C27643-","C27644-","T27645-","A27646-","A27647-","A27648-","C27649-","T27650-","G27651-","T27652-","T27653-","C27654-","A27655-","T27656-","C27657-","A27658-","G27659-","A27660-","C27661-","A27662-","A27663-","G27664-","A27665-","G27666-","G27667-","A27668-","A27669-","G27670-","T27671-","T27672-","C27673-","A27674-","A27675-","G27676-","A27677-","A27678-","C27679-","T27680-","T27681-","T27682-","A27683-","C27684-","T27685-","C27686-","T27687-","C27688-","C27689-","A27690-","A27691-","T27692-","T27693-","T27694-","T27695-","T27696-","C27697-","T27698-","T27699-","A27700-","T27701-","T27702-","G27703-","T27704-","T27705-","G27706-","C27707-","G27708-","G27709-","C27710-","A27711-","A27712-","T27713-","A27714-","G27715-","T27716-","G27717-","T27718-","T27719-","T27720-","A27721-","T27722-","A27723-","A27724-","C27725-","A27726-","C27727-","T27728-","T27729-","T27730-","G27731-","C27732-","T27733-","T27734-","C27735-","A27736-","C27737-","A27738-","C27739-","T27740-","C27741-","A27742-","A27743-","A27744-","A27745-","G27746-","A27747-","T28693C"],"ORF1a":["M85-"],"ORF7a":["Y40-","E41-","G42-","N43-","S44-","P45-","F46-","H47-","P48-","L49-","A50-","D51-","N52-","K53-","F54-","A55-","L56-","T57-","C58-","F59-","S60-","T61-","Q62-","F63-","A64-","F65-","A66-","C67-","P68-","D69-","G70-","V71-","K72-","H73-","V74-","Y75-","Q76-","L77-","R78-","A79-","R80-","S81-","V82-","S83-","P84-","K85-","L86-","F87-","I88-","R89-","Q90-","E91-","E92-","V93-","Q94-","E95-","L96-","Y97-","S98-","P99-","I100-","F101-","L102-","I103-","V104-","A105-","A106-","I107-","V108-","F109-","I110-","T111-","L112-","C113-","F114-","T115-","L116-","K117-","R118-"],"S":["R346T"]},"labels":{"aa":"ORF1a: M85-; ORF7a: Y40-, E41-, G42-, N43-, S44-, P45-, F46-, H47-, P48-, L49-, A50-, D51-, N52-, K53-, F54-, A55-, L56-, T57-, C58-, F59-, S60-, T61-, Q62-, F63-, A64-, F65-, A66-, C67-, P68-, D69-, G70-, V71-, K72-, H73-, V74-, Y75-, Q76-, L77-, R78-, A79-, R80-, S81-, V82-, S83-, P84-, K85-, L86-, F87-, I88-, R89-, Q90-, E91-, E92-, V93-, Q94-, E95-, L96-, Y97-, S98-, P99-, I100-, F101-, L102-, I103-, V104-, A105-, A106-, I107-, V108-, F109-, I110-, T111-, L112-, C113-, F114-, T115-, L116-, K117-, R118-; S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BE.13","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":95},"immune_escape":{"value":"0.6043853357193693"},"partiallyAliased":{"value":"BA.5.3.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5231200000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"BE.13"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.91137181712749}},"branch_attrs":{"mutations":{"nuc":["T516-","T517-","T2665C","C3176T","A22995G","C23802T","A26170G","C27393T","A27508-","C27509-","A27510-","T27511-"],"ORF1a":["P971S"],"ORF3a":["M260V"],"ORF7a":["T39-"],"S":["K478R","T747I"]},"labels":{"aa":"ORF1a: P971S; ORF3a: M260V; ORF7a: T39-; S: K478R, T747I","spike_mutations":"K478R, T747I"}}},{"name":"BE.8","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":94},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.3.1.8"},"qc.stopCodons.totalStopCodons":{"value":1},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BE.8"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":56.25},"placement_prior":{"value":-4.546018892937942}},"branch_attrs":{"mutations":{"nuc":["T519-","G520-","C1853T","C14178T","C22498T","C26110T","A27748-"],"ORF3a":["P240S"],"ORF7a":["K119*"]},"labels":{"aa":"ORF3a: P240S; ORF7a: K119*"}}}]},{"name":"NODE_0000281","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.3.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.3.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.6812676708796794}},"branch_attrs":{"mutations":{"nuc":["T28693C"]}},"children":[{"name":"BE.11","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"BE.11"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9004454437176532}},"branch_attrs":{"mutations":{"nuc":["T3049C","A29868G"]}}},{"name":"BE.12","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"BE.12"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.351450158682529}},"branch_attrs":{"mutations":{"nuc":["T224C","C10834T","T18975C","A29359G"]}}},{"name":"BE.9","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-11-12"},"Nextclade_pango":{"value":"BE.9"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5584462490859465}},"branch_attrs":{"mutations":{"nuc":["G515-","T516-","T517-","A518-","T519-","G520-","T21992-","A21993-","T21994-","A22893C","T22942A"],"ORF1a":["V84-","M85-"],"S":["Y144-","K444T","N460K"]},"labels":{"aa":"ORF1a: V84-, M85-; S: Y144-, K444T, N460K","spike_mutations":"Y144-, K444T, N460K"}}},{"name":"NODE_0000282","node_attrs":{"div":16,"partiallyAliased":{"value":"BA.5.3.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.3.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.1994267793440185}},"branch_attrs":{"mutations":{"nuc":["A518-","T519-","G520-","C22624T"],"ORF1a":["M85-"]},"labels":{"aa":"ORF1a: M85-"}},"children":[{"name":"BE.6","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.3.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5513799999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BE.6"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.567932504415854}},"branch_attrs":{"mutations":{"nuc":["A22600T"],"S":["R346S"]},"labels":{"aa":"S: R346S","spike_mutations":"R346S"}}},{"name":"BE.7","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":95},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.3.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BE.7"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.337389383014086}},"branch_attrs":{"mutations":{"nuc":["G22599C","A27508-","C27509-","A27510-","T27511-","A27512-","C27513-","G27514-","A27515-","G27516-","G27517-","G27518-","C27519-","A27520-","A27521-","T27522-","T27523-","C27524-","A27525-","C27526-","C27527-","A27528-","T27529-","T27530-","T27531-","C27532-","A27533-","T27534-","C27535-","C27536-","T27537-","C27538-","T27539-","A27540-","G27541-","C27542-","T27543-","G27544-","A27545-","T27546-","A27547-","A27548-","C27549-","A27550-","A27551-","A27552-","T27553-","T27554-","T27555-","G27556-","C27557-","A27558-","C27559-","T27560-","G27561-","A27562-","C27563-","T27564-","T27565-","G27566-","C27567-","T27568-","T27569-","T27570-","A27571-","G27572-","C27573-","A27574-","C27575-","T27576-","C27577-","A27578-","A27579-","T27580-","T27581-","T27582-","G27583-","C27584-","T27585-","T27586-","T27587-","T27588-","G27589-","C27590-","T27591-","T27592-","G27593-","T27594-","C27595-","C27596-","T27597-","G27598-","A27599-","C27600-","G27601-","G27602-","C27603-","G27604-","T27605-","A27606-","A27607-","A27608-","A27609-","C27610-","A27611-","C27612-","G27613-","T27614-","C27615-","T27616-","A27617-","T27618-","C27619-","A27620-","G27621-","T27622-","T27623-","A27624-","C27625-","G27626-","T27627-","G27628-","C27629-","C27630-","A27631-","G27632-","A27633-","T27634-","C27635-","A27636-","G27637-","T27638-","T27639-","T27640-","C27641-","A27642-","C27643-","C27644-","T27645-","A27646-","A27647-","A27648-","C27649-","T27650-","G27651-","T27652-","T27653-","C27654-","A27655-","T27656-","C27657-","A27658-","G27659-","A27660-","C27661-","A27662-","A27663-","G27664-","A27665-","G27666-","G27667-","A27668-","A27669-","G27670-","T27671-","T27672-","C27673-","A27674-","A27675-","G27676-","A27677-","A27678-","C27679-","T27680-","T27681-","T27682-","A27683-","C27684-","T27685-","C27686-","T27687-","C27688-","C27689-","A27690-","A27691-","T27692-","T27693-","T27694-","T27695-","T27696-","C27697-","T27698-","T27699-","A27700-","T27701-","T27702-","G27703-","T27704-","T27705-","G27706-","C27707-","G27708-","G27709-","C27710-","A27711-","A27712-","T27713-","A27714-","G27715-","T27716-","G27717-","T27718-","T27719-","T27720-","A27721-","T27722-","A27723-","A27724-","C27725-","A27726-","C27727-","T27728-","T27729-","T27730-","G27731-","C27732-","T27733-","T27734-","C27735-","A27736-","C27737-","A27738-","C27739-","T27740-","C27741-","A27742-","A27743-","A27744-","A27745-","G27746-","A27747-"],"ORF7a":["T39-","Y40-","E41-","G42-","N43-","S44-","P45-","F46-","H47-","P48-","L49-","A50-","D51-","N52-","K53-","F54-","A55-","L56-","T57-","C58-","F59-","S60-","T61-","Q62-","F63-","A64-","F65-","A66-","C67-","P68-","D69-","G70-","V71-","K72-","H73-","V74-","Y75-","Q76-","L77-","R78-","A79-","R80-","S81-","V82-","S83-","P84-","K85-","L86-","F87-","I88-","R89-","Q90-","E91-","E92-","V93-","Q94-","E95-","L96-","Y97-","S98-","P99-","I100-","F101-","L102-","I103-","V104-","A105-","A106-","I107-","V108-","F109-","I110-","T111-","L112-","C113-","F114-","T115-","L116-","K117-","R118-"],"S":["R346T"]},"labels":{"aa":"ORF7a: T39-, Y40-, E41-, G42-, N43-, S44-, P45-, F46-, H47-, P48-, L49-, A50-, D51-, N52-, K53-, F54-, A55-, L56-, T57-, C58-, F59-, S60-, T61-, Q62-, F63-, A64-, F65-, A66-, C67-, P68-, D69-, G70-, V71-, K72-, H73-, V74-, Y75-, Q76-, L77-, R78-, A79-, R80-, S81-, V82-, S83-, P84-, K85-, L86-, F87-, I88-, R89-, Q90-, E91-, E92-, V93-, Q94-, E95-, L96-, Y97-, S98-, P99-, I100-, F101-, L102-, I103-, V104-, A105-, A106-, I107-, V108-, F109-, I110-, T111-, L112-, C113-, F114-, T115-, L116-, K117-, R118-; S: R346T","spike_mutations":"R346T"}}}]}]},{"name":"NODE_0000283","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.3.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BA.5.3.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.554245876879897}},"branch_attrs":{"mutations":{"nuc":["C13342T"]}},"children":[{"name":"BE.2","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BE.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8358826948840297}},"branch_attrs":{"mutations":{"nuc":["C2910T","A10399G"],"ORF1a":["T882I"]},"labels":{"aa":"ORF1a: T882I"}}},{"name":"NODE_0000284","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.3.1.4"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.4"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.305201182522476}},"branch_attrs":{"mutations":{"nuc":["C10188A","C27800T"],"ORF1a":["T3308N"]},"labels":{"aa":"ORF1a: T3308N"}},"children":[{"name":"BE.4","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BE.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.305201182522476}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000285","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.3.1.4"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.4"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.116439703187346}},"branch_attrs":{"mutations":{"nuc":["G23608T"]}},"children":[{"name":"BE.4.2","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.60741"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BE.4.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.545082101244668}},"branch_attrs":{"mutations":{"nuc":["G22894T","T22942G","C28453T"],"ORF9b":["A57V"],"S":["K444N","N460K"]},"labels":{"aa":"ORF9b: A57V; S: K444N, N460K","spike_mutations":"K444N, N460K"}}},{"name":"NODE_0000286","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.3.1.4.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.4.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.672907159624616}},"branch_attrs":{"mutations":{"nuc":["C3768T","C22188T","G22599C"],"ORF1a":["T1168I"],"S":["P209L","R346T"]},"labels":{"aa":"ORF1a: T1168I; S: P209L, R346T","spike_mutations":"P209L, R346T"}},"children":[{"name":"BE.4.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.3.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BE.4.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.672907159624616}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000287","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.3.1.4.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.4.1.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-5.081782133357566}},"branch_attrs":{"mutations":{"nuc":["A22893G"],"S":["K444R"]},"labels":{"aa":"S: K444R","spike_mutations":"K444R"}},"children":[{"name":"BE.4.1.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.7787021841865673"},"partiallyAliased":{"value":"BA.5.3.1.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5692699999999998"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BE.4.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.081782133357566}},"branch_attrs":{"mutations":{}}},{"name":"CQ.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8220667608305177"},"partiallyAliased":{"value":"BA.5.3.1.4.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.40216999999999997"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"CQ.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.96443327652882}},"branch_attrs":{"mutations":{"nuc":["C3686T","T21992-","A21993-","T21994-","T22896C"],"ORF1a":["H1141Y"],"S":["Y144-","V445A"]},"labels":{"aa":"ORF1a: H1141Y; S: Y144-, V445A","spike_mutations":"Y144-, V445A"}}},{"name":"NODE_0000288","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.3.1.4.1.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"CQ.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.898045660925573}},"branch_attrs":{"mutations":{"nuc":["C11866T","T21992-","A21993-","T21994-"],"S":["Y144-"]},"labels":{"aa":"S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"CQ.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.7787021841865673"},"partiallyAliased":{"value":"BA.5.3.1.4.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5692699999999998"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"CQ.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.898045660925573}},"branch_attrs":{"mutations":{}}},{"name":"CQ.1.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.7787021841865673"},"partiallyAliased":{"value":"BA.5.3.1.4.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5692699999999998"},"designation_date":{"value":"2022-11-05"},"Nextclade_pango":{"value":"CQ.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.662235111973292}},"branch_attrs":{"mutations":{"nuc":["C44T","G22346T","C28849T"],"S":["A262S"]},"labels":{"aa":"S: A262S","spike_mutations":"A262S"}}}]}]}]}]}]}]},{"name":"NODE_0000289","node_attrs":{"div":15,"partiallyAliased":{"value":"BA.5.3.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.034203071339261}},"branch_attrs":{"mutations":{"nuc":["G16935A"],"ORF1b":["M1156I"]},"labels":{"aa":"ORF1b: M1156I"}},"children":[{"name":"BE.1","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-05-31"},"Nextclade_pango":{"value":"BE.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.034203071339261}},"branch_attrs":{"mutations":{}}},{"name":"BE.1.3","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-26"},"Nextclade_pango":{"value":"BE.1.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9928905819888687}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","C1625T","G22021T","G25334C","C28725T"],"N":["P151L"],"ORF1a":["G82-","H83-","V84-","M85V","L454F"],"S":["M153I","E1258Q"]},"labels":{"aa":"N: P151L; ORF1a: G82-, H83-, V84-, M85V, L454F; S: M153I, E1258Q","spike_mutations":"M153I, E1258Q"}}},{"name":"NODE_0000290","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.3.1.1.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.271177235388187}},"branch_attrs":{"mutations":{"nuc":["T2C","C1471T","G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BE.1.2","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.3.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-08-10"},"Nextclade_pango":{"value":"BE.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.271177235388187}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000291","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.3.1.1.2.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1.2.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.203678670850249}},"branch_attrs":{"mutations":{"nuc":["C2299A","T22896C","A29700G"],"ORF1a":["F678L"],"S":["V445A"]},"labels":{"aa":"ORF1a: F678L; S: V445A","spike_mutations":"V445A"}},"children":[{"name":"BE.1.2.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.7360939491355138"},"partiallyAliased":{"value":"BA.5.3.1.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5026299999999999"},"designation_date":{"value":"2022-09-21"},"Nextclade_pango":{"value":"BE.1.2.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.203678670850249}},"branch_attrs":{"mutations":{}}},{"name":"DW.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.7868890263612154"},"partiallyAliased":{"value":"BA.5.3.1.1.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.49383999999999995"},"designation_date":{"value":"2023-01-23"},"Nextclade_pango":{"value":"DW.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.893469178085173}},"branch_attrs":{"mutations":{"nuc":["C1102T","C8772T","A22941G","T24511C"],"ORF1a":["T2836I"],"S":["N460S"]},"labels":{"aa":"ORF1a: T2836I; S: N460S","spike_mutations":"N460S"}}}]}]},{"name":"NODE_0000292","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.3.1.1.4"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1.4"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.085506638119237}},"branch_attrs":{"mutations":{"nuc":["G376A","G18826A"],"ORF1b":["V1787I"]},"labels":{"aa":"ORF1b: V1787I"}},"children":[{"name":"BE.1.4","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BE.1.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.085506638119237}},"branch_attrs":{"mutations":{}}},{"name":"BE.1.4.3","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.504610817797898"},"partiallyAliased":{"value":"BA.5.3.1.1.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.39120999999999995"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BE.1.4.3"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.086489945036674}},"branch_attrs":{"mutations":{"nuc":["A10108G","C12115T","T14133C","T22896C","C26111T","C28435T"],"ORF3a":["P240L"],"ORF9b":["P51L"],"S":["V445A"]},"labels":{"aa":"ORF3a: P240L; ORF9b: P51L; S: V445A","spike_mutations":"V445A"}}},{"name":"BE.1.4.4","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.1.4.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BE.1.4.4"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.264998581419643}},"branch_attrs":{"mutations":{"nuc":["C22088T"],"S":["L176F"]},"labels":{"aa":"S: L176F","spike_mutations":"L176F"}}},{"name":"NODE_0000293","node_attrs":{"div":18,"partiallyAliased":{"value":"BA.5.3.1.1.4"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1.4"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.443855561413177}},"branch_attrs":{"mutations":{"nuc":["C25614T"]}},"children":[{"name":"BE.1.4.1","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BE.1.4.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.59388379375029}},"branch_attrs":{"mutations":{"nuc":["A1C","C23664T"],"S":["A701V"]},"labels":{"aa":"S: A701V","spike_mutations":"A701V"}}},{"name":"BE.1.4.2","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"BA.5.3.1.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BE.1.4.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.437926825111515}},"branch_attrs":{"mutations":{"nuc":["T10287C","A21137G","G22599C","C28170A","C28312T"],"ORF1a":["I3341T"],"ORF1b":["K2557R"],"ORF8":["P93T"],"ORF9b":["S10F"],"S":["R346T"]},"labels":{"aa":"ORF1a: I3341T; ORF1b: K2557R; ORF8: P93T; ORF9b: S10F; S: R346T","spike_mutations":"R346T"}}}]}]},{"name":"NODE_0000294","node_attrs":{"div":17,"partiallyAliased":{"value":"BA.5.3.1.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-2.7573846407837888}},"branch_attrs":{"mutations":{"nuc":["T2954C","C11750T"],"ORF1a":["L3829F"]},"labels":{"aa":"ORF1a: L3829F"}},"children":[{"name":"BE.1.1","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-06-24"},"Nextclade_pango":{"value":"BE.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":54},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.7573846407837888}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000295","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.3.1.1.1.2"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1.1.2"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-3.579023395508559}},"branch_attrs":{"mutations":{"nuc":["T6700C","C28432T"],"ORF9b":["S50L"]},"labels":{"aa":"ORF9b: S50L"}},"children":[{"name":"BE.1.1.2","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"BA.5.3.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"BE.1.1.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.579023395508559}},"branch_attrs":{"mutations":{}}},{"name":"CC.1","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5026717361189906"},"partiallyAliased":{"value":"BA.5.3.1.1.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.4997300000000001"},"designation_date":{"value":"2022-09-30"},"Nextclade_pango":{"value":"CC.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.68071755205981}},"branch_attrs":{"mutations":{"nuc":["G3871T","T20631C","A22910G"],"ORF1a":["K1202N"],"S":["N450D"]},"labels":{"aa":"ORF1a: K1202N; S: N450D","spike_mutations":"N450D"}}}]},{"name":"NODE_0000296","node_attrs":{"div":19,"partiallyAliased":{"value":"BA.5.3.1.1.1.1"},"clade_membership":{"value":"22B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22B (BA.5)"},"Nextclade_pango":{"value":"BE.1.1.1"},"clade_nextstrain":{"value":"22B"},"placement_prior":{"value":-4.02477503318649}},"branch_attrs":{"mutations":{"nuc":["A22893C","C28312T"],"ORF9b":["S10F"],"S":["K444T"]},"labels":{"aa":"ORF9b: S10F; S: K444T","spike_mutations":"K444T"}},"children":[{"name":"BE.1.1.1","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5859252215184801"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45952999999999994"},"designation_date":{"value":"2022-08-24"},"Nextclade_pango":{"value":"BE.1.1.1"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.02477503318649}},"branch_attrs":{"mutations":{}}},{"name":"BQ.2","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.5919832593172227"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22B (BA.5)"},"ace2_binding":{"value":"0.45205000000000006"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.2"},"clade_nextstrain":{"value":"22B"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.875086494913372}},"branch_attrs":{"mutations":{"nuc":["G23126C","C29769T"],"S":["A522P"]},"labels":{"aa":"S: A522P","spike_mutations":"A522P"}}},{"name":"NODE_0000297","node_attrs":{"div":21,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.31742940547443}},"branch_attrs":{"mutations":{"nuc":["T14257C","T22942A"],"ORF1b":["Y264H"],"S":["N460K"]},"labels":{"aa":"ORF1b: Y264H; S: N460K","clade":"22E","spike_mutations":"N460K"}},"children":[{"name":"BQ.1","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-09-02"},"Nextclade_pango":{"value":"BQ.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.31742940547443}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.12","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.12"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3471183275826233}},"branch_attrs":{"mutations":{"nuc":["C28849T"]}}},{"name":"BQ.1.14","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.14"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.387270816935702}},"branch_attrs":{"mutations":{"nuc":["C18570A"]}}},{"name":"BQ.1.17","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.57323"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.17"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.12441200116165}},"branch_attrs":{"mutations":{"nuc":["T5507C","C22893T"],"S":["T444M"]},"labels":{"aa":"S: T444M","spike_mutations":"T444M"}}},{"name":"BQ.1.19","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6528892941561388"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6127800000000001"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BQ.1.19"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.163527132148756}},"branch_attrs":{"mutations":{"nuc":["T23042C","A23370G"],"S":["S494P","N603S"]},"labels":{"aa":"S: S494P, N603S","spike_mutations":"S494P, N603S"}}},{"name":"BQ.1.20","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.847956158192316"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.5446"},"designation_date":{"value":"2022-10-16"},"Nextclade_pango":{"value":"BQ.1.20"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.548244514404754}},"branch_attrs":{"mutations":{"nuc":["G22604T"],"S":["A348S"]},"labels":{"aa":"S: A348S","spike_mutations":"A348S"}}},{"name":"BQ.1.21","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6570799999999999"},"designation_date":{"value":"2022-11-01"},"Nextclade_pango":{"value":"BQ.1.21"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.422543322026181}},"branch_attrs":{"mutations":{"nuc":["C6525T","T21992-","A21993-","T21994-","A22600C","C24844T","C25603T","T29726-"],"ORF1a":["T2087I"],"S":["Y144-","R346S"]},"labels":{"aa":"ORF1a: T2087I; S: Y144-, R346S","spike_mutations":"Y144-, R346S"}}},{"name":"BQ.1.24","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BQ.1.24"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.238282309887845}},"branch_attrs":{"mutations":{"nuc":["C22281T","G22599C","G27987T"],"ORF8":["V32L"],"S":["T240I","R346T"]},"labels":{"aa":"ORF8: V32L; S: T240I, R346T","spike_mutations":"T240I, R346T"}}},{"name":"BQ.1.31","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.31"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.334182390033395}},"branch_attrs":{"mutations":{"nuc":["A22001G"],"S":["K147E"]},"labels":{"aa":"S: K147E","spike_mutations":"K147E"}}},{"name":"BQ.1.32","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-03-11"},"Nextclade_pango":{"value":"BQ.1.32"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.955134604630494}},"branch_attrs":{"mutations":{"nuc":["C4084T","T12667C","A22305C","C26833T","A28389T"],"M":["A104V"],"N":["Q39L"],"ORF9b":["N36Y"],"S":["Y248S"]},"labels":{"aa":"M: A104V; N: Q39L; ORF9b: N36Y; S: Y248S","spike_mutations":"Y248S"}}},{"name":"BQ.1.33","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"BQ.1.33"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.826724324326835}},"branch_attrs":{"mutations":{"nuc":["A22002T","C22033A","T22423C"],"S":["K147I","F157L"]},"labels":{"aa":"S: K147I, F157L","spike_mutations":"K147I, F157L"}}},{"name":"BQ.1.4","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-03"},"Nextclade_pango":{"value":"BQ.1.4"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.617715332383874}},"branch_attrs":{"mutations":{"nuc":["C4276T","G8258A","T9100C","G22131C","G24415T","T29173G","C29870A"],"N":["H300Q"],"ORF1a":["V2665I"],"S":["R190T"]},"labels":{"aa":"N: H300Q; ORF1a: V2665I; S: R190T","spike_mutations":"R190T"}}},{"name":"BQ.1.5","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BQ.1.5"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4148942923183214}},"branch_attrs":{"mutations":{"nuc":["C16694T"],"ORF1b":["T1076I"]},"labels":{"aa":"ORF1b: T1076I"}}},{"name":"BQ.1.6","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BQ.1.6"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.115373428706401}},"branch_attrs":{"mutations":{"nuc":["G545T","C21622G","C26313T"],"ORF1a":["G94C"]},"labels":{"aa":"ORF1a: G94C"}}},{"name":"BQ.1.7","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BQ.1.7"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.682951061825259}},"branch_attrs":{"mutations":{"nuc":["G21724T"],"S":["L54F"]},"labels":{"aa":"S: L54F","spike_mutations":"L54F"}}},{"name":"BQ.1.9","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BQ.1.9"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.739536926044646}},"branch_attrs":{"mutations":{"nuc":["G8075A","G20469A","G22599C"],"ORF1a":["V2604I"],"S":["R346T"]},"labels":{"aa":"ORF1a: V2604I; S: R346T","spike_mutations":"R346T"}}},{"name":"NODE_0000298","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.11"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.11"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.7698871194276076}},"branch_attrs":{"mutations":{"nuc":["C29541T"]}},"children":[{"name":"BQ.1.11","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.11"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7698871194276076}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.11.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-01-26"},"Nextclade_pango":{"value":"BQ.1.11.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032656609309487}},"branch_attrs":{"mutations":{"nuc":["C593T","G1738T","G5164T","C21575T","T21992-","A21993-","T21994-","T24194C"],"ORF1a":["H110Y","E1633D"],"S":["L5F","Y144-"]},"labels":{"aa":"ORF1a: H110Y, E1633D; S: L5F, Y144-","spike_mutations":"L5F, Y144-"}}}]},{"name":"NODE_0000299","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.13"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.13"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.965739121238767}},"branch_attrs":{"mutations":{"nuc":["T961C","G2144A"],"ORF1a":["V627I"]},"labels":{"aa":"ORF1a: V627I"}},"children":[{"name":"BQ.1.13","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.13"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.965739121238767}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.13.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-12-25"},"Nextclade_pango":{"value":"BQ.1.13.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6378659669029925}},"branch_attrs":{"mutations":{"nuc":["C7318T","T19266C","T21992-","A21993-","T21994-","C22033A","T26106C"],"S":["Y144-","F157L"]},"labels":{"aa":"S: Y144-, F157L","spike_mutations":"Y144-, F157L"}}}]},{"name":"NODE_0000300","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.4354089894789857}},"branch_attrs":{"mutations":{"nuc":["A1777G","G6734A","C20429T","G25595T","T29492C"],"ORF1a":["V2157I"],"ORF1b":["P2321L"],"ORF3a":["R68I"]},"labels":{"aa":"ORF1a: V2157I; ORF1b: P2321L; ORF3a: R68I"}},"children":[{"name":"BQ.1.28","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-12-31"},"Nextclade_pango":{"value":"BQ.1.28"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.183486744373876}},"branch_attrs":{"mutations":{"nuc":["C44T","C25096T"]}}},{"name":"BQ.1.29","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.29"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094796498667067}},"branch_attrs":{"mutations":{"nuc":["G23222C"],"S":["E554Q"]},"labels":{"aa":"S: E554Q","spike_mutations":"E554Q"}}}]},{"name":"NODE_0000301","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.15"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.15"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.7630731322157525}},"branch_attrs":{"mutations":{"nuc":["C9611T"],"ORF1a":["L3116F"]},"labels":{"aa":"ORF1a: L3116F"}},"children":[{"name":"BQ.1.15","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.15"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7630731322157525}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000302","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.15"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.15"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.082680471327447}},"branch_attrs":{"mutations":{"nuc":["T2820C"],"ORF1a":["V852A"]},"labels":{"aa":"ORF1a: V852A"}},"children":[{"name":"BQ.1.15.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.15.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.075209919847898}},"branch_attrs":{"mutations":{"nuc":["C44T","C17745T"]}}},{"name":"BQ.1.15.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.15.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.15.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.280336145636097}},"branch_attrs":{"mutations":{"nuc":["C6286T"]}}}]}]},{"name":"internal_56b3","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-5.368624961258517}},"branch_attrs":{"mutations":{"nuc":["T8038C","C22855T","T25569C","G26031A"]}},"children":[{"name":"BQ.1.30","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6686733498591134"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.49690999999999996"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.30"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.807368421665229}},"branch_attrs":{"mutations":{"nuc":["C44T","A10621G","T16635C","T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"internal_a61e","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.25"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.25"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.181376650664488}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BQ.1.25","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-05"},"Nextclade_pango":{"value":"BQ.1.25"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.181376650664488}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.25.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.25.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-21"},"Nextclade_pango":{"value":"BQ.1.25.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.846691269573066}},"branch_attrs":{"mutations":{"nuc":["C24134A","C25553T"],"ORF3a":["A54V"],"S":["L858I"]},"labels":{"aa":"ORF3a: A54V; S: L858I","spike_mutations":"L858I"}}}]}]},{"name":"NODE_0000305","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.26"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.26"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-5.677164873886912}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","A25897G","G26426T"],"E":["R61L"],"ORF3a":["I169V"],"S":["Y144-"]},"labels":{"aa":"E: R61L; ORF3a: I169V; S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"BQ.1.26","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-11-12"},"Nextclade_pango":{"value":"BQ.1.26"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.677164873886912}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000306","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.26"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.26"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.6411772169804815}},"branch_attrs":{"mutations":{"nuc":["G17721T"]}},"children":[{"name":"BQ.1.26.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.26.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-12-04"},"Nextclade_pango":{"value":"BQ.1.26.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.683731841392309}},"branch_attrs":{"mutations":{"nuc":["G1008A","T27035C","G27798T"],"ORF1a":["S248N"],"ORF7b":["A15S"]},"labels":{"aa":"ORF1a: S248N; ORF7b: A15S"}}},{"name":"BQ.1.26.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.26.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"BQ.1.26.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.345213550525355}},"branch_attrs":{"mutations":{"nuc":["C22033A"],"S":["F157L"]},"labels":{"aa":"S: F157L","spike_mutations":"F157L"}}}]}]},{"name":"NODE_0000307","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.3"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.3"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-5.075431720958429}},"branch_attrs":{"mutations":{"nuc":["C10142A","G23417C"],"ORF1a":["L3293I"],"S":["E619Q"]},"labels":{"aa":"ORF1a: L3293I; S: E619Q","spike_mutations":"E619Q"}},"children":[{"name":"BQ.1.3","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-09-23"},"Nextclade_pango":{"value":"BQ.1.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.075431720958429}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.3.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"BQ.1.3.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.795078204356585}},"branch_attrs":{"mutations":{"nuc":["A1T","C2509T"]}}},{"name":"BQ.1.3.2","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"BQ.1.3.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4474902231118385}},"branch_attrs":{"mutations":{"nuc":["C5822T"],"ORF1a":["L1853F"]},"labels":{"aa":"ORF1a: L1853F"}}}]},{"name":"internal_BQ_1_10","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.10"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.8582601080307826}},"branch_attrs":{"mutations":{"nuc":["C27600T"]}},"children":[{"name":"BQ.1.10","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.10"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8582601080307826}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.10.3","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.10.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.277672112841009}},"branch_attrs":{"mutations":{"nuc":["C6040T","C10798T","T10819C","A22001G","A25438G"],"ORF3a":["K16E"],"S":["K147E"]},"labels":{"aa":"ORF3a: K16E; S: K147E","spike_mutations":"K147E"}}},{"name":"NODE_0000309","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.10"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.885664089550583}},"branch_attrs":{"mutations":{"nuc":["A1320C","C3040T"],"ORF1a":["E352A"]},"labels":{"aa":"ORF1a: E352A"}},"children":[{"name":"BQ.1.10.2","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6307674724674478"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6353800000000001"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.10.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.385582602311781}},"branch_attrs":{"mutations":{"nuc":["C9286T","C23130A"],"S":["T523N"]},"labels":{"aa":"S: T523N","spike_mutations":"T523N"}}},{"name":"internal_7569","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.10.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.174063200365315}},"branch_attrs":{"mutations":{"nuc":["A21999T"],"S":["H146L"]},"labels":{"aa":"S: H146L","spike_mutations":"H146L"}},"children":[{"name":"BQ.1.10.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BQ.1.10.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.174063200365315}},"branch_attrs":{"mutations":{}}},{"name":"internal_9530","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"EC.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-5.083815948842775}},"branch_attrs":{"mutations":{"nuc":["A3481T","G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}},"children":[{"name":"EC.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"EC.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.083815948842775}},"branch_attrs":{"mutations":{}}},{"name":"EC.1.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.6686733498591134"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.10.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.49690999999999996"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"EC.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.052410644872617}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","T22896C"],"S":["Y144-","V445A"]},"labels":{"aa":"S: Y144-, V445A","spike_mutations":"Y144-, V445A"}}}]}]}]}]},{"name":"internal_1083","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.2"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.505621636264668}},"branch_attrs":{"mutations":{"nuc":["A23558G"],"S":["I666V"]},"labels":{"aa":"S: I666V","spike_mutations":"I666V"}},"children":[{"name":"BQ.1.2","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-09-23"},"Nextclade_pango":{"value":"BQ.1.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.505621636264668}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.2.3","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"BQ.1.2.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7187990177511963}},"branch_attrs":{"mutations":{"nuc":["G26314C"],"E":["V24L"]},"labels":{"aa":"E: V24L"}}},{"name":"internal_dbfb","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.2.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.2971889565676795}},"branch_attrs":{"mutations":{"nuc":["A4414G","C15960A","C17746T","T21992-","A21993-","T21994-","C27513T","C29171A","A29868G"],"N":["H300N"],"ORF1b":["P1427S"],"S":["Y144-"]},"labels":{"aa":"N: H300N; ORF1b: P1427S; S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"BQ.1.2.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.2.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2971889565676795}},"branch_attrs":{"mutations":{}}},{"name":"FB.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FB.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.044889576771215}},"branch_attrs":{"mutations":{"nuc":["A14-","T18-","C19-","C20-","C21-","A22-","G23-","G24-","A22320G"],"S":["D253G"]},"labels":{"aa":"S: D253G","spike_mutations":"D253G"}}},{"name":"FB.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.632807736165538"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.5174000000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FB.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9719655664252755}},"branch_attrs":{"mutations":{"nuc":["G3243A","T10771C","A22995G"],"ORF1a":["G993D"],"S":["K478R"]},"labels":{"aa":"ORF1a: G993D; S: K478R","spike_mutations":"K478R"}}}]},{"name":"NODE_0000314","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.2"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.2.2"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-8.953490476776487}},"branch_attrs":{"mutations":{"nuc":["C44T","T516-","T517-","A22001G","G22599C","T22896C","G26951C","C28163A"],"ORF8":["C90*"],"S":["K147E","R346T","V445A"]},"labels":{"aa":"ORF8: C90*; S: K147E, R346T, V445A","spike_mutations":"K147E, R346T, V445A"}},"children":[{"name":"JH.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":19},"immune_escape":{"value":"0.899896100866079"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66664"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"JH.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731418209559792}},"branch_attrs":{"mutations":{"nuc":["A518-","G19129A","A22106G","C22314T","T23019C","T23042C","G23222A","G26158-","T26159-","T26160-","A26161-","A26162-","T26163-","C26164-","C26165-","A26166-","G26167-","T26168-","A26169-","G29779T"],"ORF1a":["M85-"],"ORF1b":["E1888K"],"ORF3a":["V255-","V256-","N257-","P258-"],"S":["K182E","P251L","V486A","S494P","E554K"]},"labels":{"aa":"ORF1a: M85-; ORF1b: E1888K; ORF3a: V255-, V256-, N257-, P258-; S: K182E, P251L, V486A, S494P, E554K","spike_mutations":"K182E, P251L, V486A, S494P, E554K"}}},{"name":"NODE_0000315","node_attrs":{"div":29,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.2"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.2.2"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-8.953490476776487}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","G4255A","T22119-","C22120-","A22121-","A22122-","A22123-","A22124-"],"ORF1a":["G82-","H83-","V84-"],"S":["F186-","K187-","N188Y"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-; S: F186-, K187-, N188Y","spike_mutations":"F186-, K187-, N188Y"}},"children":[{"name":"BQ.1.2.2","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":19},"immune_escape":{"value":"0.876558608001532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.60833"},"designation_date":{"value":"2023-04-28"},"Nextclade_pango":{"value":"BQ.1.2.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-8.953490476776487}},"branch_attrs":{"mutations":{}}},{"name":"JH.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":31},"immune_escape":{"value":"1.0372275564477176"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.2.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6059300000000001"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"JH.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":67},"frameShifts":{"value":"ORF7a:83-122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.73147743505235}},"branch_attrs":{"mutations":{"nuc":["C2003T","C2453T","G8368A","G14857T","A17824G","T23011A","G23012A","C23013A","T23019C","A25983G","T27605-","A27606-","A27607-","A27608-","A27609-","C27610-","A27611-","C27612-","G27613-","T27614-","C27615-","T27616-","A27617-","T27618-","C27619-","A27620-","G27621-","T27622-","T27623-","A27624-","C27625-","G27626-","T27627-","G27628-","C27629-","C27630-","A27631-","G27632-","A27633-","T27634-","C27635-","A27636-","G27637-","T27638-","T27639-","A27683-","C27684-","T27685-","C27686-","T27687-","C27688-","C27689-","A27690-","A27691-","T27692-","T27693-","T27694-","T27695-","T27696-","C27697-","T27698-","T27699-","A27700-","T27701-","T27702-","G27703-","T27704-","T27705-","G27706-","C27707-","G27708-","G27709-","C27710-","A27711-","A27712-","T27713-","A27714-","G27715-","T27716-","G27717-","T27718-","T27719-","T27720-","A27721-","T27722-","A27723-","A27724-","C27725-","A27726-","C27727-","T27728-","T27729-","T27730-","G27731-","C27732-","T27733-","T27734-","C27735-","A27736-","C27737-","A27738-"],"ORF1a":["L580F","L730F"],"ORF1b":["V464F","T1453A"],"ORF7a":["V71-","K72-","H73-","V74-","Y75-","Q76-","L77-","R78-","A79-","R80-","S81-","V82-"],"S":["A484K","V486A"]},"labels":{"aa":"ORF1a: L580F, L730F; ORF1b: V464F, T1453A; ORF7a: V71-, K72-, H73-, V74-, Y75-, Q76-, L77-, R78-, A79-, R80-, S81-, V82-; S: A484K, V486A","spike_mutations":"A484K, V486A"}}}]}]}]},{"name":"internal_efa8","node_attrs":{"div":22,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-2.744487283154557}},"branch_attrs":{"mutations":{"nuc":["A17039G"],"ORF1b":["N1191S"]},"labels":{"aa":"ORF1b: N1191S"}},"children":[{"name":"BQ.1.16","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"BQ.1.16"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.314147174889032}},"branch_attrs":{"mutations":{"nuc":["C1884T","C19875T"],"ORF1a":["A540V"]},"labels":{"aa":"ORF1a: A540V"}}},{"name":"BQ.1.18","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BQ.1.18"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.532931041958653}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","G22599C","C26455T"],"E":["P71S"],"S":["Y144-","R346T"]},"labels":{"aa":"E: P71S; S: Y144-, R346T","spike_mutations":"Y144-, R346T"}}},{"name":"BQ.1.22","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-02"},"Nextclade_pango":{"value":"BQ.1.22"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.077306197683184}},"branch_attrs":{"mutations":{"nuc":["C44T","G22599C","C26681T"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}}},{"name":"BQ.1.23","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BQ.1.23"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4429987987472135}},"branch_attrs":{"mutations":{"nuc":["A2653G","T21992-","A21993-","T21994-"],"S":["Y144-"]},"labels":{"aa":"S: Y144-","spike_mutations":"Y144-"}}},{"name":"BQ.1.27","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6686733498591134"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.49690999999999996"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"BQ.1.27"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.644919932579092}},"branch_attrs":{"mutations":{"nuc":["T22896C","T29599C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"internal_10e8","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.8"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.8"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.7042798061719795}},"branch_attrs":{"mutations":{"nuc":["C1779T","C7735T","C8251T","T21992-","A21993-","T21994-"],"ORF1a":["S505F"],"S":["Y144-"]},"labels":{"aa":"ORF1a: S505F; S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"BQ.1.8","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-11"},"Nextclade_pango":{"value":"BQ.1.8"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7042798061719795}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.8.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BQ.1.8.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.383720129486964}},"branch_attrs":{"mutations":{"nuc":["C21575T","C22329T","C29708T"],"S":["L5F","S256L"]},"labels":{"aa":"S: L5F, S256L","spike_mutations":"L5F, S256L"}}},{"name":"internal_9a91","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.8.2"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.8.2"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.464492915695532}},"branch_attrs":{"mutations":{"nuc":["C12115T","C23625T"],"S":["A688V"]},"labels":{"aa":"S: A688V","spike_mutations":"A688V"}},"children":[{"name":"BQ.1.8.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.8.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BQ.1.8.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.464492915695532}},"branch_attrs":{"mutations":{}}},{"name":"FF.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.8.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FF.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606544588486038}},"branch_attrs":{"mutations":{"nuc":["A1451G","C17999T","C22329T","G23401T","G25052A"],"ORF1a":["I396V"],"ORF1b":["T1511I"],"S":["S256L","Q613H","V1164I"]},"labels":{"aa":"ORF1a: I396V; ORF1b: T1511I; S: S256L, Q613H, V1164I","spike_mutations":"S256L, Q613H, V1164I"}}}]}]},{"name":"NODE_0000319","node_attrs":{"div":23,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-2.375201835465256}},"branch_attrs":{"mutations":{"nuc":["G22599C"],"S":["R346T"]},"labels":{"aa":"S: R346T","spike_mutations":"R346T"}},"children":[{"name":"BQ.1.1","node_attrs":{"div":23,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-09-09"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.375201835465256}},"branch_attrs":{"mutations":{}}},{"name":"BQ.1.1.11","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8548159753728394"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.7242"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"BQ.1.1.11"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.852737618697481}},"branch_attrs":{"mutations":{"nuc":["T23042C"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}}},{"name":"BQ.1.1.12","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8548159753728394"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.7242"},"designation_date":{"value":"2022-10-21"},"Nextclade_pango":{"value":"BQ.1.1.12"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.514328825985196}},"branch_attrs":{"mutations":{"nuc":["C13368T","T23042C"],"ORF1a":["T4368I"],"S":["S494P"]},"labels":{"aa":"ORF1a: T4368I; S: S494P","spike_mutations":"S494P"}}},{"name":"BQ.1.1.16","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BQ.1.1.16"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.065681710787311}},"branch_attrs":{"mutations":{"nuc":["G23383T"],"S":["Q607H"]},"labels":{"aa":"S: Q607H","spike_mutations":"Q607H"}}},{"name":"BQ.1.1.17","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BQ.1.1.17"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1685433735838275}},"branch_attrs":{"mutations":{"nuc":["C7083T"],"ORF1a":["S2273F"]},"labels":{"aa":"ORF1a: S2273F"}}},{"name":"BQ.1.1.19","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BQ.1.1.19"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.189745872549516}},"branch_attrs":{"mutations":{"nuc":["A29413T"],"N":["Q380H"]},"labels":{"aa":"N: Q380H"}}},{"name":"BQ.1.1.20","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BQ.1.1.20"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5295770134663926}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","C26002T","G27047T"],"ORF3a":["H204Y"],"S":["Y144-"]},"labels":{"aa":"ORF3a: H204Y; S: Y144-","spike_mutations":"Y144-"}}},{"name":"BQ.1.1.21","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BQ.1.1.21"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"frameShifts":{"value":"ORF8:122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9406033132346865}},"branch_attrs":{"mutations":{"nuc":["A17946G","T21992-","A21993-","T21994-","A28254-","A28761G"],"N":["Q163R"],"ORF8":["I121-"],"S":["Y144-"]},"labels":{"aa":"N: Q163R; ORF8: I121-; S: Y144-","spike_mutations":"Y144-"}}},{"name":"BQ.1.1.24","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BQ.1.1.24"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9291268225772074}},"branch_attrs":{"mutations":{"nuc":["C11941T"]}}},{"name":"BQ.1.1.25","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9785616933431603"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.7449699999999998"},"designation_date":{"value":"2022-11-22"},"Nextclade_pango":{"value":"BQ.1.1.25"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.061937384701247}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","T23031C"],"S":["Y144-","F490S"]},"labels":{"aa":"S: Y144-, F490S","spike_mutations":"Y144-, F490S"}}},{"name":"BQ.1.1.26","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.858635551636838"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.5921799999999998"},"designation_date":{"value":"2022-12-01"},"Nextclade_pango":{"value":"BQ.1.1.26"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8948931206182085}},"branch_attrs":{"mutations":{"nuc":["T19224C","G22973C","A25712G"],"ORF3a":["Y107C"],"S":["E471Q"]},"labels":{"aa":"ORF3a: Y107C; S: E471Q","spike_mutations":"E471Q"}}},{"name":"BQ.1.1.30","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.876558608001532"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.60833"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"BQ.1.1.30"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.709073980682977}},"branch_attrs":{"mutations":{"nuc":["C12763T","T22896C"],"S":["V445A"]},"labels":{"aa":"S: V445A","spike_mutations":"V445A"}}},{"name":"BQ.1.1.31","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-24"},"Nextclade_pango":{"value":"BQ.1.1.31"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8492538361805426}},"branch_attrs":{"mutations":{"nuc":["C22329T"],"S":["S256L"]},"labels":{"aa":"S: S256L","spike_mutations":"S256L"}}},{"name":"BQ.1.1.34","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8548159753728394"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.7242"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"BQ.1.1.34"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.904869267555827}},"branch_attrs":{"mutations":{"nuc":["C7528T","T21992-","A21993-","T21994-","T23042C"],"S":["Y144-","S494P"]},"labels":{"aa":"S: Y144-, S494P","spike_mutations":"Y144-, S494P"}}},{"name":"BQ.1.1.36","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-14"},"Nextclade_pango":{"value":"BQ.1.1.36"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.110069258007394}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"BQ.1.1.37","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-23"},"Nextclade_pango":{"value":"BQ.1.1.37"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.427042842219349}},"branch_attrs":{"mutations":{"nuc":["T1453C"]}}},{"name":"BQ.1.1.40","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.40"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.40"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8359154528746977}},"branch_attrs":{"mutations":{"nuc":["C28344T"],"N":["T24I"]},"labels":{"aa":"N: T24I"}}},{"name":"BQ.1.1.41","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.41"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.41"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.866208801601545}},"branch_attrs":{"mutations":{"nuc":["C7851T","C18162T","A22107T","T24142C"],"ORF1a":["A2529V"],"S":["K182I"]},"labels":{"aa":"ORF1a: A2529V; S: K182I","spike_mutations":"K182I"}}},{"name":"BQ.1.1.42","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.42"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.42"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.13060682524559}},"branch_attrs":{"mutations":{"nuc":["G872A","T21992-","A21993-","T21994-","C23673T"],"ORF1a":["D203N"],"S":["Y144-","S704L"]},"labels":{"aa":"ORF1a: D203N; S: Y144-, S704L","spike_mutations":"Y144-, S704L"}}},{"name":"BQ.1.1.44","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.44"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.44"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0512052044835265}},"branch_attrs":{"mutations":{"nuc":["A22320G"],"S":["D253G"]},"labels":{"aa":"S: D253G","spike_mutations":"D253G"}}},{"name":"BQ.1.1.45","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.45"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.45"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.723092320755346}},"branch_attrs":{"mutations":{"nuc":["T22304G"],"S":["Y248D"]},"labels":{"aa":"S: Y248D","spike_mutations":"Y248D"}}},{"name":"BQ.1.1.47","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.47"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.47"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.146453793661229}},"branch_attrs":{"mutations":{"nuc":["G9854A","A22002T"],"ORF1a":["V3197M"],"S":["K147I"]},"labels":{"aa":"ORF1a: V3197M; S: K147I","spike_mutations":"K147I"}}},{"name":"BQ.1.1.50","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.50"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"BQ.1.1.50"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.710377380262839}},"branch_attrs":{"mutations":{"nuc":["A2271G","C15842T","T18159C","T21992-","A21993-","T21994-","A22190-","T22191-","T22192-"],"ORF1a":["K669R"],"ORF1b":["T792I"],"S":["Y144-","I210-"]},"labels":{"aa":"ORF1a: K669R; ORF1b: T792I; S: Y144-, I210-","spike_mutations":"Y144-, I210-"}}},{"name":"BQ.1.1.51","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.51"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"BQ.1.1.51"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9665852337478187}},"branch_attrs":{"mutations":{"nuc":["A1G","C25693T"],"ORF3a":["L101F"]},"labels":{"aa":"ORF3a: L101F"}}},{"name":"BQ.1.1.55","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.55"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.55"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.442872171417866}},"branch_attrs":{"mutations":{"nuc":["T21889G","T21992-","A21993-","T21994-","A25008G"],"S":["Y144-","K1149R"]},"labels":{"aa":"S: Y144-, K1149R","spike_mutations":"Y144-, K1149R"}}},{"name":"BQ.1.1.56","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.56"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.56"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.415679937127287}},"branch_attrs":{"mutations":{"nuc":["C24863T"],"S":["H1101Y"]},"labels":{"aa":"S: H1101Y","spike_mutations":"H1101Y"}}},{"name":"BQ.1.1.57","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.57"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.57"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.399663856803227}},"branch_attrs":{"mutations":{"nuc":["T22328G","C29541T"],"S":["S256A"]},"labels":{"aa":"S: S256A","spike_mutations":"S256A"}}},{"name":"BQ.1.1.58","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.58"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.58"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.311689090343711}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","A24362G"],"S":["Y144-","I934V"]},"labels":{"aa":"S: Y144-, I934V","spike_mutations":"Y144-, I934V"}}},{"name":"BQ.1.1.6","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.6"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9030827981754426}},"branch_attrs":{"mutations":{"nuc":["C2306T"],"ORF1a":["L681F"]},"labels":{"aa":"ORF1a: L681F"}}},{"name":"BQ.1.1.60","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.60"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.60"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.260401808098821}},"branch_attrs":{"mutations":{"nuc":["C23634T","G28077T"],"ORF8":["V62L"],"S":["S691F"]},"labels":{"aa":"ORF8: V62L; S: S691F","spike_mutations":"S691F"}}},{"name":"BQ.1.1.63","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.63"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.63"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.437898693537159}},"branch_attrs":{"mutations":{"nuc":["C18981T","G19021A","T22304C"],"ORF1b":["V1852I"],"S":["Y248H"]},"labels":{"aa":"ORF1b: V1852I; S: Y248H","spike_mutations":"Y248H"}}},{"name":"BQ.1.1.64","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.64"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.64"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.145161025136072}},"branch_attrs":{"mutations":{"nuc":["C106T","G1999T","T22119C"],"S":["F186S"]},"labels":{"aa":"S: F186S","spike_mutations":"F186S"}}},{"name":"BQ.1.1.66","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.66"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.66"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.408326766371056}},"branch_attrs":{"mutations":{"nuc":["A22003T","T29855C"],"S":["K147N"]},"labels":{"aa":"S: K147N","spike_mutations":"K147N"}}},{"name":"BQ.1.1.67","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.67"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.67"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.000618506328003}},"branch_attrs":{"mutations":{"nuc":["C5907T","C6726T","C22088T"],"ORF1a":["T1881I","T2154I"],"S":["L176F"]},"labels":{"aa":"ORF1a: T1881I, T2154I; S: L176F","spike_mutations":"L176F"}}},{"name":"BQ.1.1.68","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.68"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.68"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.958388287225258}},"branch_attrs":{"mutations":{"nuc":["G3896A","C26822T"],"ORF1a":["V1211I"]},"labels":{"aa":"ORF1a: V1211I"}}},{"name":"BQ.1.1.69","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.69"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.69"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5657485654107846}},"branch_attrs":{"mutations":{"nuc":["C19547T"],"ORF1b":["S2027L"]},"labels":{"aa":"ORF1b: S2027L"}}},{"name":"BQ.1.1.70","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.70"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.70"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9097039285777773}},"branch_attrs":{"mutations":{"nuc":["C2973T","A27156G"],"M":["S212G"],"ORF1a":["A903V"]},"labels":{"aa":"M: S212G; ORF1a: A903V"}}},{"name":"BQ.1.1.73","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.73"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-04-03"},"Nextclade_pango":{"value":"BQ.1.1.73"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305612284433229}},"branch_attrs":{"mutations":{"nuc":["T10441C","T16533C","A22001G","A22182G"],"S":["K147E","H207R"]},"labels":{"aa":"S: K147E, H207R","spike_mutations":"K147E, H207R"}}},{"name":"BQ.1.1.75","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9453008666054391"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.75"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"-0.04867000000000007"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"BQ.1.1.75"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305612284433229}},"branch_attrs":{"mutations":{"nuc":["C15540T","C15738T","T19026C","A22108C","T22928C","A25168G","G25855T"],"ORF3a":["D155Y"],"S":["K182N","F456L"]},"labels":{"aa":"ORF3a: D155Y; S: K182N, F456L","spike_mutations":"K182N, F456L"}}},{"name":"BQ.1.1.76","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.76"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"BQ.1.1.76"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.08179439429512}},"branch_attrs":{"mutations":{"nuc":["C15180T"]}}},{"name":"BQ.1.1.77","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.77"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"BQ.1.1.77"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.467917756430658}},"branch_attrs":{"mutations":{"nuc":["C12853T","C17750T","T21992-","A21993-","T21994-"],"ORF1b":["A1428V"],"S":["Y144-"]},"labels":{"aa":"ORF1b: A1428V; S: Y144-","spike_mutations":"Y144-"}}},{"name":"BQ.1.1.9","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.9"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.651982177407361}},"branch_attrs":{"mutations":{"nuc":["G22014T"],"S":["S151I"]},"labels":{"aa":"S: S151I","spike_mutations":"S151I"}}},{"name":"internal_7361","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.14"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.14"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-5.2185147284585325}},"branch_attrs":{"mutations":{"nuc":["G23608T"]}},"children":[{"name":"BQ.1.1.14","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BQ.1.1.14"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.2185147284585325}},"branch_attrs":{"mutations":{}}},{"name":"CW.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":25},"immune_escape":{"value":"0.9004963623734039"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.14.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.70602"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"CW.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.475499124946927}},"branch_attrs":{"mutations":{"nuc":["G425-","T426-","A427-","G428-","A429-","A430-","G431-","T432-","T433-","G434-","A435-","A436-","A437-","A438-","A439-","G440-","G441-","C442-","G443-","T444-","T445-","T446-","T447-","G448-","C449-","C450-","T451-","C452-","A453-","A454-","C455-","T456-","T457-","G22898A"],"ORF1a":["L53-","V54-","E55-","V56-","E57-","K58-","G59-","V60-","L61-","P62-","Q63-"],"S":["G446S"]},"labels":{"aa":"ORF1a: L53-, V54-, E55-, V56-, E57-, K58-, G59-, V60-, L61-, P62-, Q63-; S: G446S","spike_mutations":"G446S"}}}]},{"name":"NODE_0000321","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.15"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.15"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.9575322772734953}},"branch_attrs":{"mutations":{"nuc":["T18897C"]}},"children":[{"name":"BQ.1.1.15","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BQ.1.1.15"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9575322772734953}},"branch_attrs":{"mutations":{}}},{"name":"DM.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.999420337675459"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.65602"},"designation_date":{"value":"2022-12-07"},"Nextclade_pango":{"value":"DM.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.880529449983555}},"branch_attrs":{"mutations":{"nuc":["G22604T"],"S":["A348S"]},"labels":{"aa":"S: A348S","spike_mutations":"A348S"}}}]},{"name":"NODE_0000322","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.2"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.2"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.045709942521543}},"branch_attrs":{"mutations":{"nuc":["A22320G","G27430A"],"ORF7a":["A13T"],"S":["D253G"]},"labels":{"aa":"ORF7a: A13T; S: D253G","spike_mutations":"D253G"}},"children":[{"name":"BQ.1.1.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-19"},"Nextclade_pango":{"value":"BQ.1.1.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.045709942521543}},"branch_attrs":{"mutations":{}}},{"name":"DU.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-12"},"Nextclade_pango":{"value":"DU.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.057438167820704}},"branch_attrs":{"mutations":{"nuc":["T10003C","G24992C"],"S":["E1144Q"]},"labels":{"aa":"S: E1144Q","spike_mutations":"E1144Q"}}}]},{"name":"NODE_0000323","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.909344802123236}},"branch_attrs":{"mutations":{"nuc":["G6421T"]}},"children":[{"name":"BQ.1.1.23","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-04"},"Nextclade_pango":{"value":"BQ.1.1.23"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7183283462125734}},"branch_attrs":{"mutations":{"nuc":["G25681A","T29867A"],"ORF3a":["V97I"]},"labels":{"aa":"ORF3a: V97I"}}},{"name":"BQ.1.1.27","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-02"},"Nextclade_pango":{"value":"BQ.1.1.27"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.459755983358382}},"branch_attrs":{"mutations":{"nuc":["T8855C","G22103A"],"ORF1a":["F2864L"],"S":["G181R"]},"labels":{"aa":"ORF1a: F2864L; S: G181R","spike_mutations":"G181R"}}}]},{"name":"NODE_0000324","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.4323851786743145}},"branch_attrs":{"mutations":{"nuc":["G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}},"children":[{"name":"BQ.1.1.29","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"BQ.1.1.29"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.305301271448286}},"branch_attrs":{"mutations":{"nuc":["G7850A","T11374C"],"ORF1a":["A2529T"]},"labels":{"aa":"ORF1a: A2529T"}}},{"name":"BQ.1.1.79","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.79"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"BQ.1.1.79"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7036255762374894}},"branch_attrs":{"mutations":{"nuc":["C1594T","C16362T","T24079C","A29868G"]}}}]},{"name":"internal_5abd","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.35"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.35"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.415109400379364}},"branch_attrs":{"mutations":{"nuc":["C601T","G5699A","T8719C","A22001G"],"ORF1a":["A1812T"],"S":["K147E"]},"labels":{"aa":"ORF1a: A1812T; S: K147E","spike_mutations":"K147E"}},"children":[{"name":"BQ.1.1.35","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-14"},"Nextclade_pango":{"value":"BQ.1.1.35"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.415109400379364}},"branch_attrs":{"mutations":{}}},{"name":"ET.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.35.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-16"},"Nextclade_pango":{"value":"ET.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7365048811936665}},"branch_attrs":{"mutations":{"nuc":["T9619C","A22108T"],"S":["K182N"]},"labels":{"aa":"S: K182N","spike_mutations":"K182N"}}}]},{"name":"NODE_0000326","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.65"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.65"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.598452090764023}},"branch_attrs":{"mutations":{"nuc":["A22002T","C28677T"],"N":["T135I"],"S":["K147I"]},"labels":{"aa":"N: T135I; S: K147I","spike_mutations":"K147I"}},"children":[{"name":"BQ.1.1.65","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.65"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.65"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.598452090764023}},"branch_attrs":{"mutations":{}}},{"name":"ES.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.65.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-09"},"Nextclade_pango":{"value":"ES.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.694334495260386}},"branch_attrs":{"mutations":{"nuc":["C44T","A21717G"],"S":["Q52R"]},"labels":{"aa":"S: Q52R","spike_mutations":"Q52R"}}}]},{"name":"NODE_0000327","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.7"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.7"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.803724096241121}},"branch_attrs":{"mutations":{"nuc":["C912A"],"ORF1a":["S216Y"]},"labels":{"aa":"ORF1a: S216Y"}},"children":[{"name":"BQ.1.1.7","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.7"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.803724096241121}},"branch_attrs":{"mutations":{}}},{"name":"DK.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8391726960276329"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.74371"},"designation_date":{"value":"2022-11-30"},"Nextclade_pango":{"value":"DK.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828609359691608}},"branch_attrs":{"mutations":{"nuc":["G5690A","G22577A"],"ORF1a":["A1809T"],"S":["D339N"]},"labels":{"aa":"ORF1a: A1809T; S: D339N","spike_mutations":"D339N"}}}]},{"name":"internal_d988","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.72"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.72"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.381399503958634}},"branch_attrs":{"mutations":{"nuc":["A13766C"],"ORF1b":["D100A"]},"labels":{"aa":"ORF1b: D100A"}},"children":[{"name":"BQ.1.1.72","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.72"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"BQ.1.1.72"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.381399503958634}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-"],"S":["Y144-"]},"labels":{"aa":"S: Y144-","spike_mutations":"Y144-"}}},{"name":"FC.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8338701893068007"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.72.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6288199999999999"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FC.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.877644910089668}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"NODE_0000329","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.8"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.8"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.2081749312242005}},"branch_attrs":{"mutations":{"nuc":["C1385T","C3170T"],"ORF1a":["H374Y","L969F"]},"labels":{"aa":"ORF1a: H374Y, L969F"}},"children":[{"name":"BQ.1.1.8","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.8"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2081749312242005}},"branch_attrs":{"mutations":{}}},{"name":"DP.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9220262551442965"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.66913"},"designation_date":{"value":"2022-12-24"},"Nextclade_pango":{"value":"DP.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.227960978063106}},"branch_attrs":{"mutations":{"nuc":["G22616T","C29353T"],"S":["A352S"]},"labels":{"aa":"S: A352S","spike_mutations":"A352S"}}}]},{"name":"internal_edc4","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.759732957033694}},"branch_attrs":{"mutations":{"nuc":["T18383C","T29867A"],"ORF1b":["V1639A"]},"labels":{"aa":"ORF1b: V1639A"}},"children":[{"name":"BQ.1.1.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"BQ.1.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.759732957033694}},"branch_attrs":{"mutations":{}}},{"name":"CZ.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9785616933431603"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6774299999999999"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"CZ.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208018891174064}},"branch_attrs":{"mutations":{"nuc":["C44T","C1549T","T13298C","T23030A"],"S":["F490I"]},"labels":{"aa":"S: F490I","spike_mutations":"F490I"}}},{"name":"CZ.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"CZ.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.567016194896527}},"branch_attrs":{"mutations":{"nuc":["C2462T","C23625T"],"S":["A688V"]},"labels":{"aa":"S: A688V","spike_mutations":"A688V"}}}]},{"name":"NODE_0000331","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.10"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.10"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.939773805662557}},"branch_attrs":{"mutations":{"nuc":["T16413C","T21992-","A21993-","T21994-"],"S":["Y144-"]},"labels":{"aa":"S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"BQ.1.1.10","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.10"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.939773805662557}},"branch_attrs":{"mutations":{}}},{"name":"FA.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8338701893068007"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6288199999999999"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FA.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.763325815988932}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"FA.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.10.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FA.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.0942108824049495}},"branch_attrs":{"mutations":{"nuc":["C14583T","C22530T","C26058T"],"S":["T323I"]},"labels":{"aa":"S: T323I","spike_mutations":"T323I"}}}]},{"name":"NODE_0000332","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.22"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.22"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.045216227038155}},"branch_attrs":{"mutations":{"nuc":["C913A","T21992-","A21993-","T21994-"],"S":["Y144-"]},"labels":{"aa":"S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"BQ.1.1.22","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"BQ.1.1.22"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.045216227038155}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000333","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.22.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"ER.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.9719099368583315}},"branch_attrs":{"mutations":{"nuc":["T22328C"],"S":["S256P"]},"labels":{"aa":"S: S256P","spike_mutations":"S256P"}},"children":[{"name":"ER.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.22.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-05"},"Nextclade_pango":{"value":"ER.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9719099368583315}},"branch_attrs":{"mutations":{}}},{"name":"ER.1.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.22.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-07"},"Nextclade_pango":{"value":"ER.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.793166519595157}},"branch_attrs":{"mutations":{"nuc":["C1346T","G5008T","G22331A","C28005T"],"ORF1a":["P361S"],"ORF8":["P38S"],"S":["G257S"]},"labels":{"aa":"ORF1a: P361S; ORF8: P38S; S: G257S","spike_mutations":"G257S"}}}]}]},{"name":"NODE_0000334","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.3"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.3"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.6677376175668055}},"branch_attrs":{"mutations":{"nuc":["A15111G"]}},"children":[{"name":"BQ.1.1.3","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6677376175668055}},"branch_attrs":{"mutations":{}}},{"name":"DR.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-03"},"Nextclade_pango":{"value":"DR.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.550778388137179}},"branch_attrs":{"mutations":{"nuc":["C44T","T21992-","A21993-","T21994-","G22021T"],"S":["Y144-","M153I"]},"labels":{"aa":"S: Y144-, M153I","spike_mutations":"Y144-, M153I"}}},{"name":"DR.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8338701893068007"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6288199999999999"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"DR.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.523308941718963}},"branch_attrs":{"mutations":{"nuc":["C5407T","C11461T","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"NODE_0000335","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.46"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.46"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.590461501877903}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","C22033A","T25406C"],"ORF3a":["M5T"],"S":["Y144-","F157L"]},"labels":{"aa":"ORF3a: M5T; S: Y144-, F157L","spike_mutations":"Y144-, F157L"}},"children":[{"name":"BQ.1.1.46","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.46"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.46"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.590461501877903}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000336","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.46.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"EN.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.665425507097121}},"branch_attrs":{"mutations":{"nuc":["G25352T"],"S":["V1264L"]},"labels":{"aa":"S: V1264L","spike_mutations":"V1264L"}},"children":[{"name":"EN.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.46.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"EN.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.665425507097121}},"branch_attrs":{"mutations":{}}},{"name":"EN.1.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.46.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"EN.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.994791982622144}},"branch_attrs":{"mutations":{"nuc":["C2299T","G22021T"],"S":["M153I"]},"labels":{"aa":"S: M153I","spike_mutations":"M153I"}}}]}]},{"name":"NODE_0000337","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.6576307432225037}},"branch_attrs":{"mutations":{"nuc":["C14097T"]}},"children":[{"name":"BQ.1.1.48","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.48"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-30"},"Nextclade_pango":{"value":"BQ.1.1.48"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.527957242801901}},"branch_attrs":{"mutations":{"nuc":["C22295A"],"S":["H245N"]},"labels":{"aa":"S: H245N","spike_mutations":"H245N"}}},{"name":"BQ.1.1.49","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.49"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-30"},"Nextclade_pango":{"value":"BQ.1.1.49"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.846465204493746}},"branch_attrs":{"mutations":{"nuc":["A2219G","C24809G"],"ORF1a":["I652V"],"S":["H1083D"]},"labels":{"aa":"ORF1a: I652V; S: H1083D","spike_mutations":"H1083D"}}},{"name":"BQ.1.1.78","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.78"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"BQ.1.1.78"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.402607795631203}},"branch_attrs":{"mutations":{"nuc":["G1210T","T2551C","G14400A","C16887T","C19325T"],"ORF1a":["M315I"],"ORF1b":["P1953L"]},"labels":{"aa":"ORF1a: M315I; ORF1b: P1953L"}}}]},{"name":"internal_f9e1","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.52"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.52"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.19374163735878}},"branch_attrs":{"mutations":{"nuc":["C7006T"]}},"children":[{"name":"BQ.1.1.52","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.52"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.52"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.19374163735878}},"branch_attrs":{"mutations":{}}},{"name":"EA.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.52.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"EA.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5337986101125}},"branch_attrs":{"mutations":{"nuc":["G28198T"],"ORF8":["C102F"]},"labels":{"aa":"ORF8: C102F"}}},{"name":"EA.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8741852327282095"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.52.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.34834999999999994"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"EA.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.119659122647806}},"branch_attrs":{"mutations":{"nuc":["C22971T"],"S":["T470I"]},"labels":{"aa":"S: T470I","spike_mutations":"T470I"}}}]},{"name":"internal_1117","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.53"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.53"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.413460440724125}},"branch_attrs":{"mutations":{"nuc":["A22115G"],"S":["N185D"]},"labels":{"aa":"S: N185D","spike_mutations":"N185D"}},"children":[{"name":"BQ.1.1.53","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.53"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.53"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.413460440724125}},"branch_attrs":{"mutations":{}}},{"name":"FM.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.53.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"FM.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.90655690086866}},"branch_attrs":{"mutations":{"nuc":["C10576T","T21992-","A21993-","T21994-","G23401T"],"S":["Y144-","Q613H"]},"labels":{"aa":"S: Y144-, Q613H","spike_mutations":"Y144-, Q613H"}}},{"name":"FM.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.53.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"FM.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.715024623499121}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","G24398A"],"S":["Y144-","G946R"]},"labels":{"aa":"S: Y144-, G946R","spike_mutations":"Y144-, G946R"}}}]},{"name":"internal_159a","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.18"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.18"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.440934850730346}},"branch_attrs":{"mutations":{"nuc":["C6541T"]}},"children":[{"name":"BQ.1.1.18","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-31"},"Nextclade_pango":{"value":"BQ.1.1.18"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.440934850730346}},"branch_attrs":{"mutations":{}}},{"name":"ED.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.18.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"ED.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6334138833420844}},"branch_attrs":{"mutations":{"nuc":["T1562A","C25714T","G28079T"],"ORF1a":["C433S"],"ORF3a":["L108F"]},"labels":{"aa":"ORF1a: C433S; ORF3a: L108F"}}},{"name":"ED.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.18.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"ED.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.180595073602269}},"branch_attrs":{"mutations":{"nuc":["G3047T"],"ORF1a":["D928Y"]},"labels":{"aa":"ORF1a: D928Y"}}},{"name":"ED.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.18.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"ED.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.864268066280404}},"branch_attrs":{"mutations":{"nuc":["G24089A"],"S":["D843N"]},"labels":{"aa":"S: D843N","spike_mutations":"D843N"}}}]},{"name":"NODE_0000341","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.096876625645761}},"branch_attrs":{"mutations":{"nuc":["C18828T"]}},"children":[{"name":"BQ.1.1.54","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.54"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.54"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.536460187143245}},"branch_attrs":{"mutations":{"nuc":["C1627T","G4255A","T22119C","G28904A"],"N":["A211T"],"S":["F186S"]},"labels":{"aa":"N: A211T; S: F186S","spike_mutations":"F186S"}}},{"name":"BQ.1.1.59","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.59"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.59"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.837698856075102}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","C23757T","C29362T"],"S":["Y144-","T732I"]},"labels":{"aa":"S: Y144-, T732I","spike_mutations":"Y144-, T732I"}}},{"name":"NODE_0000342","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.28"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.28"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.411526787197328}},"branch_attrs":{"mutations":{"nuc":["C16393T","C22314T"],"ORF1b":["P976S"],"S":["P251L"]},"labels":{"aa":"ORF1b: P976S; S: P251L","spike_mutations":"P251L"}},"children":[{"name":"BQ.1.1.28","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-04"},"Nextclade_pango":{"value":"BQ.1.1.28"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.411526787197328}},"branch_attrs":{"mutations":{}}},{"name":"EH.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.28.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"EH.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.907446515153577}},"branch_attrs":{"mutations":{"nuc":["G22302A","A22305C","A27388G","A29868G"],"S":["S247N","Y248S"]},"labels":{"aa":"S: S247N, Y248S","spike_mutations":"S247N, Y248S"}}}]}]},{"name":"internal_748f","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.32"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.32"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.9142700750502515}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","G22021A"],"S":["Y144-","M153I"]},"labels":{"aa":"S: Y144-, M153I","spike_mutations":"Y144-, M153I"}},"children":[{"name":"BQ.1.1.32","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-31"},"Nextclade_pango":{"value":"BQ.1.1.32"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9142700750502515}},"branch_attrs":{"mutations":{}}},{"name":"DT.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8548159753728394"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.32.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.7242"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"DT.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208721812384693}},"branch_attrs":{"mutations":{"nuc":["C7764T","C11986T","T23042C"],"ORF1a":["S2500F"],"S":["S494P"]},"labels":{"aa":"ORF1a: S2500F; S: S494P","spike_mutations":"S494P"}}},{"name":"DT.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.32.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-03"},"Nextclade_pango":{"value":"DT.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.169060143863169}},"branch_attrs":{"mutations":{"nuc":["C23202A"],"S":["T547K"]},"labels":{"aa":"S: T547K","spike_mutations":"T547K"}}},{"name":"DT.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.32.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"DT.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.62593556793681}},"branch_attrs":{"mutations":{"nuc":["C22088T"],"S":["L176F"]},"labels":{"aa":"S: L176F","spike_mutations":"L176F"}}}]},{"name":"NODE_0000344","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.38"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.38"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.838115788467124}},"branch_attrs":{"mutations":{"nuc":["T7633C","C22314T","A24129G"],"S":["P251L","N856S"]},"labels":{"aa":"S: P251L, N856S","spike_mutations":"P251L, N856S"}},"children":[{"name":"BQ.1.1.38","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-24"},"Nextclade_pango":{"value":"BQ.1.1.38"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.838115788467124}},"branch_attrs":{"mutations":{}}},{"name":"EW.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8338701893068007"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.38.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6288199999999999"},"designation_date":{"value":"2023-03-21"},"Nextclade_pango":{"value":"EW.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.735675097959239}},"branch_attrs":{"mutations":{"nuc":["T4579A","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"EW.2","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.38.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-21"},"Nextclade_pango":{"value":"EW.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.789401202052985}},"branch_attrs":{"mutations":{"nuc":["C19269T","A19703G","C23664T"],"ORF1b":["N2079S"],"S":["A701V"]},"labels":{"aa":"ORF1b: N2079S; S: A701V","spike_mutations":"A701V"}}},{"name":"EW.3","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.999420337675459"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.38.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.65602"},"designation_date":{"value":"2023-03-21"},"Nextclade_pango":{"value":"EW.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.289627710482717}},"branch_attrs":{"mutations":{"nuc":["C421T","G22604T"],"S":["A348S"]},"labels":{"aa":"S: A348S","spike_mutations":"A348S"}}}]},{"name":"internal_ORF8F6S","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.024667710907985}},"branch_attrs":{"mutations":{"nuc":["T27910C"],"ORF8":["F6S"]},"labels":{"aa":"ORF8: F6S"}},"children":[{"name":"BQ.1.1.62","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.62"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.62"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9664070975234855}},"branch_attrs":{"mutations":{"nuc":["T17400C","C23423T"],"S":["P621S"]},"labels":{"aa":"S: P621S","spike_mutations":"P621S"}}},{"name":"internal_14424C","node_attrs":{"div":25,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.4746168908293487}},"branch_attrs":{"mutations":{"nuc":["A14424C"]}},"children":[{"name":"BQ.1.1.61","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.61"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"BQ.1.1.61"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.152758648657224}},"branch_attrs":{"mutations":{"nuc":["C23424A"],"S":["P621H"]},"labels":{"aa":"S: P621H","spike_mutations":"P621H"}}},{"name":"NODE_0000347","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.43"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.43"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.859422717550562}},"branch_attrs":{"mutations":{"nuc":["C4570T","G23401C","C26292T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}},"children":[{"name":"BQ.1.1.43","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.43"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"BQ.1.1.43"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.859422717550562}},"branch_attrs":{"mutations":{}}},{"name":"EZ.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.43.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-21"},"Nextclade_pango":{"value":"EZ.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.613798595219926}},"branch_attrs":{"mutations":{"nuc":["G22302A","A22305C"],"S":["S247N","Y248S"]},"labels":{"aa":"S: S247N, Y248S","spike_mutations":"S247N, Y248S"}}}]}]}]},{"name":"NODE_0000348","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.74"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.74"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.680761435878682}},"branch_attrs":{"mutations":{"nuc":["A22106G"],"S":["K182E"]},"labels":{"aa":"S: K182E","spike_mutations":"K182E"}},"children":[{"name":"BQ.1.1.74","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.74"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-04-05"},"Nextclade_pango":{"value":"BQ.1.1.74"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.680761435878682}},"branch_attrs":{"mutations":{}}},{"name":"FN.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8338701893068007"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.74.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6288199999999999"},"designation_date":{"value":"2023-04-05"},"Nextclade_pango":{"value":"FN.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.424051606042219}},"branch_attrs":{"mutations":{"nuc":["G3955A","C16767T","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"NODE_0000349","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-6.20294844006344}},"branch_attrs":{"mutations":{"nuc":["C22314T","T23716C","A28834G"],"S":["P251L"]},"labels":{"aa":"S: P251L","spike_mutations":"P251L"}},"children":[{"name":"NODE_0000350","node_attrs":{"div":30,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.39"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.39"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.915029477539745}},"branch_attrs":{"mutations":{"nuc":["T19293C","G22216T","C25047T"],"S":["Q218H","P1162L"]},"labels":{"aa":"S: Q218H, P1162L","spike_mutations":"Q218H, P1162L"}},"children":[{"name":"BQ.1.1.39","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.39"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-01-27"},"Nextclade_pango":{"value":"BQ.1.1.39"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.915029477539745}},"branch_attrs":{"mutations":{}}},{"name":"FQ.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.39.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-04-17"},"Nextclade_pango":{"value":"FQ.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.986904330132502}},"branch_attrs":{"mutations":{"nuc":["G1577A","G23401T"],"ORF1a":["V438I"],"S":["Q613H"]},"labels":{"aa":"ORF1a: V438I; S: Q613H","spike_mutations":"Q613H"}}}]},{"name":"NODE_0000351","node_attrs":{"div":31,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.71"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.71"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-5.555547968377434}},"branch_attrs":{"mutations":{"nuc":["G2281A","C8950T","T21992-","A21993-","T21994-","G22898C","T25959C"],"S":["Y144-","G446R"]},"labels":{"aa":"S: Y144-, G446R","spike_mutations":"Y144-, G446R"}},"children":[{"name":"BQ.1.1.71","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9004963623734039"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.71"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.24659999999999999"},"designation_date":{"value":"2023-03-03"},"Nextclade_pango":{"value":"BQ.1.1.71"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.555547968377434}},"branch_attrs":{"mutations":{}}},{"name":"EV.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9004963623734039"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.71.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.24659999999999999"},"designation_date":{"value":"2023-03-21"},"Nextclade_pango":{"value":"EV.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907681112961623}},"branch_attrs":{"mutations":{"nuc":["A13132G","T22304C"],"S":["Y248H"]},"labels":{"aa":"S: Y248H","spike_mutations":"Y248H"}}}]}]}]},{"name":"internal_f19c","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.4"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.4"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.4914011997127403}},"branch_attrs":{"mutations":{"nuc":["T29173C"]}},"children":[{"name":"BQ.1.1.4","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.4"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.4914011997127403}},"branch_attrs":{"mutations":{}}},{"name":"EE.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EE.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1383805901212725}},"branch_attrs":{"mutations":{"nuc":["C29370T"],"N":["T366I"]},"labels":{"aa":"N: T366I"}}},{"name":"EE.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EE.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.165588078700573}},"branch_attrs":{"mutations":{"nuc":["G18079A"],"ORF1b":["V1538I"]},"labels":{"aa":"ORF1b: V1538I"}}},{"name":"EE.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EE.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":59},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.252853838399916}},"branch_attrs":{"mutations":{"nuc":["C22498T"]}}},{"name":"EE.4","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.4.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EE.4"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7267365168401065}},"branch_attrs":{"mutations":{"nuc":["G21718T"],"S":["Q52H"]},"labels":{"aa":"S: Q52H","spike_mutations":"Q52H"}}},{"name":"EE.5","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.4.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EE.5"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4907415227381655}},"branch_attrs":{"mutations":{"nuc":["A22115T"],"S":["N185Y"]},"labels":{"aa":"S: N185Y","spike_mutations":"N185Y"}}}]},{"name":"NODE_0000353","node_attrs":{"div":24,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.13"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.075687485937388}},"branch_attrs":{"mutations":{"nuc":["T21992-","A21993-","T21994-","G26428T"],"E":["V62F"],"S":["Y144-"]},"labels":{"aa":"E: V62F; S: Y144-","spike_mutations":"Y144-"}},"children":[{"name":"BQ.1.1.13","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-23"},"Nextclade_pango":{"value":"BQ.1.1.13"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.075687485937388}},"branch_attrs":{"mutations":{"nuc":["-21992T","-21993A","-21994T"],"S":["-144Y"]},"labels":{"aa":"S: -144Y","spike_mutations":"-144Y"}}},{"name":"EF.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EF.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.219251373947539}},"branch_attrs":{"mutations":{"nuc":["G13822A"],"ORF1b":["V119I"]},"labels":{"aa":"ORF1b: V119I"}}},{"name":"EF.3","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"EF.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.815797347309131}},"branch_attrs":{"mutations":{"nuc":["T23672A"],"S":["S704T"]},"labels":{"aa":"S: S704T","spike_mutations":"S704T"}}},{"name":"NODE_0000354","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"EF.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.16605234385002}},"branch_attrs":{"mutations":{"nuc":["A1T","C6040T"]}},"children":[{"name":"EF.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EF.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.16605234385002}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000355","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"EF.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.0506350800432624}},"branch_attrs":{"mutations":{"nuc":["C23086T"]}},"children":[{"name":"EF.1.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EF.1.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.482694095215274}},"branch_attrs":{"mutations":{"nuc":["T15492C"]}}},{"name":"EF.1.3","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EF.1.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.047025886944512}},"branch_attrs":{"mutations":{"nuc":["C28770T"],"N":["T166I"]},"labels":{"aa":"N: T166I"}}},{"name":"internal_e491","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"EF.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.095656999916108}},"branch_attrs":{"mutations":{"nuc":["T7783C"]}},"children":[{"name":"EF.1.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EF.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.095656999916108}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000357","node_attrs":{"div":29,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"EF.1.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.770949633434759}},"branch_attrs":{"mutations":{"nuc":["C22033A"],"S":["F157L"]},"labels":{"aa":"S: F157L","spike_mutations":"F157L"}},"children":[{"name":"EF.1.1.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-12"},"Nextclade_pango":{"value":"EF.1.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.770949633434759}},"branch_attrs":{"mutations":{}}},{"name":"EY.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.13.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-21"},"Nextclade_pango":{"value":"EY.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.565186521942843}},"branch_attrs":{"mutations":{"nuc":["G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}}}]}]}]}]}]},{"name":"NODE_0000358","node_attrs":{"div":26,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"BQ.1.1.5"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-3.718650994782643}},"branch_attrs":{"mutations":{"nuc":["G11828A","C17676T","C20405T"],"ORF1a":["V3855I"],"ORF1b":["P2313L"]},"labels":{"aa":"ORF1a: V3855I; ORF1b: P2313L"}},"children":[{"name":"BQ.1.1.5","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"BQ.1.1.5"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.718650994782643}},"branch_attrs":{"mutations":{}}},{"name":"DN.2","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"DN.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.751994326342687}},"branch_attrs":{"mutations":{"nuc":["A6790G","G20518A"],"ORF1b":["D2351N"]},"labels":{"aa":"ORF1b: D2351N"}}},{"name":"NODE_0000359","node_attrs":{"div":27,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.3"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"DN.3"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-5.151842152200773}},"branch_attrs":{"mutations":{"nuc":["G3338T"],"ORF1a":["V1025L"]},"labels":{"aa":"ORF1a: V1025L"}},"children":[{"name":"DN.3","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"DN.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.151842152200773}},"branch_attrs":{"mutations":{}}},{"name":"DN.3.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"DN.3.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.284448797084822}},"branch_attrs":{"mutations":{"nuc":["A22106G"],"S":["K182E"]},"labels":{"aa":"S: K182E","spike_mutations":"K182E"}}}]},{"name":"NODE_0000360","node_attrs":{"div":28,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"DN.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.633611973311725}},"branch_attrs":{"mutations":{"nuc":["A22003T","C26010T"],"S":["K147N"]},"labels":{"aa":"S: K147N","spike_mutations":"K147N"}},"children":[{"name":"DN.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"DN.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.633611973311725}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000361","node_attrs":{"div":29,"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1.1"},"clade_membership":{"value":"22E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22E (BQ.1)"},"Nextclade_pango":{"value":"DN.1.1"},"clade_nextstrain":{"value":"22E"},"placement_prior":{"value":-4.70116876677398}},"branch_attrs":{"mutations":{"nuc":["C6740T"],"ORF1a":["R2159W"]},"labels":{"aa":"ORF1a: R2159W"}},"children":[{"name":"DN.1.1","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2022-12-25"},"Nextclade_pango":{"value":"DN.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.70116876677398}},"branch_attrs":{"mutations":{}}},{"name":"DN.1.1.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8436081462158846"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"2.05606"},"designation_date":{"value":"2023-01-30"},"Nextclade_pango":{"value":"DN.1.1.1"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5096736494854825}},"branch_attrs":{"mutations":{"nuc":["G2426A","A8520G","C8905T","A22920T","T29446C"],"ORF1a":["V721I","N2752S"],"S":["Y453F"]},"labels":{"aa":"ORF1a: V721I, N2752S; S: Y453F","spike_mutations":"Y453F"}}},{"name":"DN.1.1.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8370864649381277"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.5626099999999999"},"designation_date":{"value":"2023-01-30"},"Nextclade_pango":{"value":"DN.1.1.2"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.711226661933451}},"branch_attrs":{"mutations":{"nuc":["C703T","C22998T"],"S":["P479L"]},"labels":{"aa":"S: P479L","spike_mutations":"P479L"}}},{"name":"DN.1.1.3","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"DN.1.1.3"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.19448389474826}},"branch_attrs":{"mutations":{"nuc":["C23673T","C25515T"],"S":["S704L"]},"labels":{"aa":"S: S704L","spike_mutations":"S704L"}}},{"name":"DN.1.1.4","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.8396729195612707"},"partiallyAliased":{"value":"BA.5.3.1.1.1.1.1.1.5.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22E (BQ.1)"},"ace2_binding":{"value":"0.6722600000000001"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"DN.1.1.4"},"clade_nextstrain":{"value":"22E"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167336233247928}},"branch_attrs":{"mutations":{"nuc":["T14046C","A23004G"],"S":["N481S"]},"labels":{"aa":"S: N481S","spike_mutations":"N481S"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]},{"name":"rec_parent","node_attrs":{"div":0,"partiallyAliased":{"value":"BA.2"},"clade_membership":{"value":"21L"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"21L (BA.2)"},"Nextclade_pango":{"value":"BA.2"},"clade_nextstrain":{"value":"21L"},"placement_prior":{"value":-5.285004125828556}},"branch_attrs":{"mutations":{"nuc":["-11288T","-11289T","-11290T","-11291T","-11292T","-11293T","-11294T","-11295T","-11296T","-21633T","-21634T","-21635T","-21636T","-21637T","-21638T","-21639T","-21640T","-21641T","-28362T","-28363T","-28364T","-28365T","-28366T","-28367T","-28368T","-28369T","-28370T","-29734T","-29735T","-29736T","-29737T","-29738T","-29739T","-29740T","-29741T","-29742T","-29743T","-29744T","-29745T","-29746T","-29747T","-29748T","-29749T","-29750T","-29751T","-29752T","-29753T","-29754T","-29755T","-29756T","-29757T","-29758T","-29759T"]}},"children":[{"name":"XAA","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAA"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-07"},"Nextclade_pango":{"value":"XAA"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36193675988707}},"branch_attrs":{"mutations":{"nuc":["G670T","A1610G","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","C8247T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12445T","A19356G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","N449D","I842T","K856R","S1307G","S2083-","L2084I","S2661F","L3201F"]},"labels":{"aa":"ORF1a: R135S, N449D, I842T, K856R, S1307G, S2083-, L2084I, S2661F, L3201F"}}},{"name":"XAB","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAB"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-07"},"Nextclade_pango":{"value":"XAB"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.48024929909619}},"branch_attrs":{"mutations":{"nuc":["G670T","C2470T","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C17010T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C22792T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","L3201F"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, L3201F"}}},{"name":"XAC","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAC"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-10"},"Nextclade_pango":{"value":"XAC"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.542821882360923}},"branch_attrs":{"mutations":{"nuc":["C8991T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C15720T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C25731T","C25810T","C26028T","T26060C","A26530G","T26858C","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759G"],"M":["D3G"],"ORF1a":["A2909V","L3201F"],"ORF3a":["L140F","I223T"],"ORF6":["L61D"]},"labels":{"aa":"M: D3G; ORF1a: A2909V, L3201F; ORF3a: L140F, I223T; ORF6: L61D"}}},{"name":"XAD","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAD"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-13"},"Nextclade_pango":{"value":"XAD"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.734278849212308}},"branch_attrs":{"mutations":{"nuc":["A1250G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C22792T","A26530G","T26858C","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A28877T","G28878C","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["D3G"],"N":["R413S"],"ORF1a":["T329A","L3201F"],"ORF6":["L61D"]},"labels":{"aa":"M: D3G; N: R413S; ORF1a: T329A, L3201F; ORF6: L61D"}}},{"name":"XAE","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAE"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.17270999999999995"},"designation_date":{"value":"2022-06-13"},"Nextclade_pango":{"value":"XAE"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.018426756433486}},"branch_attrs":{"mutations":{"nuc":["G4975A","A6390C","C9803T","C9866T","C11249T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G22882T","T26060C","A26530G","T26858C","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A28877T","G28878C","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29748C","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["D3G"],"N":["R413S"],"ORF1a":["E2042A","L3201F","R3662C"],"ORF3a":["I223T"],"ORF6":["L61D"],"S":["K440N"]},"labels":{"aa":"M: D3G; N: R413S; ORF1a: E2042A, L3201F, R3662C; ORF3a: I223T; ORF6: L61D; S: K440N","spike_mutations":"K440N"}}},{"name":"XAF","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAF"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-13"},"Nextclade_pango":{"value":"XAF"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.464283970147646}},"branch_attrs":{"mutations":{"nuc":["G670T","C2470T","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11514T","G11516T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C22792T","A24433G","C25624T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T","T3750I","V3751F"],"ORF3a":["H78Y"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T, T3750I, V3751F; ORF3a: H78Y"}}},{"name":"XAG","node_attrs":{"div":16,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAG"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.28093999999999997"},"designation_date":{"value":"2022-06-14"},"Nextclade_pango":{"value":"XAG"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":47},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.667489021710115}},"branch_attrs":{"mutations":{"nuc":["G670T","C2470T","T2790C","A2832G","C2857T","A4184G","T4321C","T5386G","C5585A","G6513-","T6514-","T6515-","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12334G","C17502T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T22674C","C22792T","G22882T","T26270C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["I9T"],"ORF1a":["R135S","I842T","K856R","S1307G","L1774I","S2083-","L2084I","L3201F"],"S":["F371S","K440N"]},"labels":{"aa":"E: I9T; ORF1a: R135S, I842T, K856R, S1307G, L1774I, S2083-, L2084I, L3201F; S: F371S, K440N","spike_mutations":"F371S, K440N"}}},{"name":"XAH","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":10},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAH"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-14"},"Nextclade_pango":{"value":"XAH"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.695003323259809}},"branch_attrs":{"mutations":{"nuc":["T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G17242T","C18246T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A26530G","T26858C","C27382G","T27383A","C27384T","T28362G","T28363A","T28364G","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["D3G"],"N":["-33G","R413S"],"ORF1b":["A1259S"],"ORF6":["L61D"],"ORF9b":["-27E"]},"labels":{"aa":"M: D3G; N: -33G, R413S; ORF1b: A1259S; ORF6: L61D; ORF9b: -27E"}}},{"name":"XAJ","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"XAJ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-21"},"Nextclade_pango":{"value":"XAJ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.840839658893643}},"branch_attrs":{"mutations":{"nuc":["C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11674T","T15009C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T22917G","T23018G","G23040A","A23535G","C23673T","C25416T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["L3201F"],"S":["H69-","V70-","L452R","F486V","R493Q","N658S","S704L"]},"labels":{"aa":"ORF1a: L3201F; S: H69-, V70-, L452R, F486V, R493Q, N658S, S704L","spike_mutations":"H69-, V70-, L452R, F486V, R493Q, N658S, S704L"}}},{"name":"XAK","node_attrs":{"div":19,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.2769375478127462"},"partiallyAliased":{"value":"XAK"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.15166"},"designation_date":{"value":"2022-07-22"},"Nextclade_pango":{"value":"XAK"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":47},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.90776110089479}},"branch_attrs":{"mutations":{"nuc":["C4927T","T5386G","C7834T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12049T","C15240T","T15714C","T17410C","T19955C","G20055A","T21618C","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","A22001G","G22599A","G22882T","T22942G","G23040A","C24863T","G26577C","A27507G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["E19Q"],"ORF1a":["L3201F"],"ORF1b":["C1315R","I2163T"],"S":["I19T","-24L","-25P","-26P","S27A","H69-","V70-","K147E","R346K","K440N","N460K","R493Q","H1101Y"]},"labels":{"aa":"M: E19Q; ORF1a: L3201F; ORF1b: C1315R, I2163T; S: I19T, -24L, -25P, -26P, S27A, H69-, V70-, K147E, R346K, K440N, N460K, R493Q, H1101Y","spike_mutations":"I19T, -24L, -25P, -26P, S27A, H69-, V70-, K147E, R346K, K440N, N460K, R493Q, H1101Y"}}},{"name":"XAL","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAL"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-07-29"},"Nextclade_pango":{"value":"XAL"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":47},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.093941024739553}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","C2470T","T2790C","A2832G","A2865G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11285-","T11286-","G11287-","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","A11537G","T12880C","T13195C","C15240T","T15714C","T17410C","G21586T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A23604C","G26577C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["E19Q"],"ORF1a":["R135S","I842T","K856R","E867G","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T","L3674-","-3677F","I3758V"],"ORF1b":["C1315R"],"S":["L8F","H681P"]},"labels":{"aa":"M: E19Q; ORF1a: R135S, I842T, K856R, E867G, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T, L3674-, -3677F, I3758V; ORF1b: C1315R; S: L8F, H681P","spike_mutations":"L8F, H681P"}}},{"name":"XAM","node_attrs":{"div":13,"totalAminoacidDeletions":{"value":10},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAM"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.75567"},"designation_date":{"value":"2022-07-29"},"Nextclade_pango":{"value":"XAM"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.479143105927665}},"branch_attrs":{"mutations":{"nuc":["G670T","C2470T","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11514T","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","C22792T","T22813G","A24433G","C25624T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","L3201F","T3750I"],"ORF3a":["H78Y"],"S":["-24L","-25P","-26P","S27A","N417K"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, L3201F, T3750I; ORF3a: H78Y; S: -24L, -25P, -26P, S27A, N417K","spike_mutations":"-24L, -25P, -26P, S27A, N417K"}}},{"name":"XAN","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"XAN"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-07-29"},"Nextclade_pango":{"value":"XAN"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.853020008913239}},"branch_attrs":{"mutations":{"nuc":["C7973A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C17822T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T22917G","T23018G","G23040A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","T27438C","T27696C","C27889T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29666T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-","G29868A"],"M":["D3N"],"ORF1a":["L2570M","L3201F"],"ORF1b":["P1452L"],"ORF6":["L61D"],"S":["H69-","V70-","L452R","F486V","R493Q"]},"labels":{"aa":"M: D3N; ORF1a: L2570M, L3201F; ORF1b: P1452L; ORF6: L61D; S: H69-, V70-, L452R, F486V, R493Q","spike_mutations":"H69-, V70-, L452R, F486V, R493Q"}}},{"name":"XAP","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAP"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-07-30"},"Nextclade_pango":{"value":"XAP"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.940211940279565}},"branch_attrs":{"mutations":{"nuc":["C5407A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A26530G","T26858C","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["D3G"],"N":["R413S"],"ORF1a":["L3201F"],"ORF6":["L61D"]},"labels":{"aa":"M: D3G; N: R413S; ORF1a: L3201F; ORF6: L61D"}}},{"name":"XAQ","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAQ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-08-03"},"Nextclade_pango":{"value":"XAQ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":47},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.061821677959456}},"branch_attrs":{"mutations":{"nuc":["G670T","T2790C","A2832G","A4184G","T4321C","C4586T","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","C9857T","T10198C","A10447G","T11285-","T11286-","G11287-","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","A11537G","C12085T","T12880C","T13195C","C15240T","T15714C","T17410C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A23779T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T","L3674-","-3677F","I3758V"],"ORF1b":["C1315R"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T, L3674-, -3677F, I3758V; ORF1b: C1315R"}}},{"name":"XAR","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAR"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-08-18"},"Nextclade_pango":{"value":"XAR"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2151839803710365}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","T2790C","A2832G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21796T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","L3201F"],"S":["R78S"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, L3201F; S: R78S","spike_mutations":"R78S"}}},{"name":"XAS","node_attrs":{"div":5,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"XAS"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-22"},"Nextclade_pango":{"value":"XAS"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.377498370611247}},"branch_attrs":{"mutations":{"nuc":["T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12160A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T22917G","T23018G","G23040A","C27945T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF8":["Q18*"],"S":["H69-","V70-","L452R","F486V","R493Q"]},"labels":{"aa":"ORF8: Q18*; S: H69-, V70-, L452R, F486V, R493Q","spike_mutations":"H69-, V70-, L452R, F486V, R493Q"}}},{"name":"XAT","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAT"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-08-22"},"Nextclade_pango":{"value":"XAT"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.125278377285808}},"branch_attrs":{"mutations":{"nuc":["C8991T","C9866T","C10277T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C19317T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C25810T","A26530G","T26858C","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["D3G"],"N":["R413S"],"ORF1a":["A2909V","L3201F","L3338F"],"ORF3a":["L140F"],"ORF6":["L61D"]},"labels":{"aa":"M: D3G; N: R413S; ORF1a: A2909V, L3201F, L3338F; ORF3a: L140F; ORF6: L61D"}}},{"name":"XAU","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XAU"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-08-23"},"Nextclade_pango":{"value":"XAU"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7652098378517005}},"branch_attrs":{"mutations":{"nuc":["G670T","C2470T","T2790C","A2832G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T17407C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C22792T","A24433G","C25624T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","L3201F"],"ORF3a":["H78Y"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, L3201F; ORF3a: H78Y"}}},{"name":"XAV","node_attrs":{"div":14,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"XAV"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-23"},"Nextclade_pango":{"value":"XAV"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.073344529678631}},"branch_attrs":{"mutations":{"nuc":["C6606T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C15960T","G17278T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T22917G","T23018G","G23040A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","T27438C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"ORF1a":["S2114F","L3201F"],"ORF1b":["V1271L"],"ORF6":["L61D"],"S":["H69-","V70-","L452R","F486V","R493Q"]},"labels":{"aa":"M: D3N; ORF1a: S2114F, L3201F; ORF1b: V1271L; ORF6: L61D; S: H69-, V70-, L452R, F486V, R493Q","spike_mutations":"H69-, V70-, L452R, F486V, R493Q"}}},{"name":"XAW","node_attrs":{"div":82,"totalAminoacidDeletions":{"value":7},"immune_escape":{"value":"0.2120001437046406"},"partiallyAliased":{"value":"XAW"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.91409"},"designation_date":{"value":"2022-08-25"},"Nextclade_pango":{"value":"XAW"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363701945002102}},"branch_attrs":{"mutations":{"nuc":["G210T","C335T","G569A","G670T","T689C","G1048T","G1125A","C1973T","T2790C","G3246A","G4181T","A4184G","T4321C","G4561A","C5052T","C5167T","G6149A","C6402T","T6640C","C7124T","G7427A","C8986T","G9053T","T9344C","G9424A","T9534C","T9676C","T10198C","A10323G","A10447G","A10449C","A11201G","T11289C","T11291G","T11292G","G11330A","A11332G","C11866T","T12880C","C13806T","C13994T","C14585T","G15451A","T15714C","C16466T","C17304T","T17410C","C17550T","A17973G","G18163A","G18525A","C19220T","C19290T","T19955C","G20055A","C20402T","G20493A","C21575T","T21618G","T21634A","T21635C","T21637C","T21638C","T21639C","T21641G","A21987G","A22029-","G22030-","T22031-","T22032-","C22033-","A22034-","A22194-","T22195-","T22196-","G22200T","T22283C","G22289-","C22290-","T22291-","T22292-","T22293-","A22294-","T22674C","G22899A","T22942A","G23040A","T23042C","C23114T","G23599T","G24145A","A25592G","C26537T","G28248-","A28249-","T28250-","T28251-","T28252-","C28253-","T28271-","T28311C","T28362G","T28363A","T28364G","T28365A","T28366A","T28367C","T28368G","T28369C","T28370A","A28461G","G28562A","G28646A","C28849T","C28873T","A28881T","A28882G","C28883G","G28916T","G29402T","C29510A","C29635T","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"N":["L13P","-31E","-32R","-33S","D63G","G97S","A125T","K203M","R204G","G215C","D377Y","R413S"],"ORF1a":["R24C","E102K","R135S","S142P","K261N","R287K","I842T","S994N","A1306S","S1307G","P1596L","D1962N","P2046L","P2287S","A2388T","V2930L","F3027L","I3090T","K3353R","H3395P","T3646A","-3675S","-3676G","-3677F","V3689M"],"ORF1b":["A176V","A373V","G662S","P1000L","C1315R","V1566I","A1918V","I2163T","S2312L"],"ORF3a":["K67R"],"ORF8":["D119-","F120-"],"ORF9b":["S10P","-27E","-28N","-29A","T60A"],"S":["L5F","I19R","-24L","-25L","-26P","S27A","D142G","E156-","F157-","R158G","N211-","L212I","G213V","L242-","A243-","F371S","G446D","N460K","R493Q","S494P","K679N"]},"labels":{"aa":"N: L13P, -31E, -32R, -33S, D63G, G97S, A125T, K203M, R204G, G215C, D377Y, R413S; ORF1a: R24C, E102K, R135S, S142P, K261N, R287K, I842T, S994N, A1306S, S1307G, P1596L, D1962N, P2046L, P2287S, A2388T, V2930L, F3027L, I3090T, K3353R, H3395P, T3646A, -3675S, -3676G, -3677F, V3689M; ORF1b: A176V, A373V, G662S, P1000L, C1315R, V1566I, A1918V, I2163T, S2312L; ORF3a: K67R; ORF8: D119-, F120-; ORF9b: S10P, -27E, -28N, -29A, T60A; S: L5F, I19R, -24L, -25L, -26P, S27A, D142G, E156-, F157-, R158G, N211-, L212I, G213V, L242-, A243-, F371S, G446D, N460K, R493Q, S494P, K679N","spike_mutations":"L5F, I19R, -24L, -25L, -26P, S27A, D142G, E156-, F157-, R158G, N211-, L212I, G213V, L242-, A243-, F371S, G446D, N460K, R493Q, S494P, K679N"}}},{"name":"XAZ","node_attrs":{"div":14,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.3863247170036884"},"partiallyAliased":{"value":"XAZ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5583100000000001"},"designation_date":{"value":"2022-08-27"},"Nextclade_pango":{"value":"XAZ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":52},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8044293978633728}},"branch_attrs":{"mutations":{"nuc":["C1912T","C2232T","C3317T","T3358C","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12160A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T22917G","T23018G","G23040A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"ORF1a":["A656V","P1018S"],"ORF6":["L61D"],"S":["H69-","V70-","L452R","F486V","R493Q"]},"labels":{"aa":"M: D3N; ORF1a: A656V, P1018S; ORF6: L61D; S: H69-, V70-, L452R, F486V, R493Q","spike_mutations":"H69-, V70-, L452R, F486V, R493Q"}}},{"name":"XBA","node_attrs":{"div":62,"totalAminoacidDeletions":{"value":4},"immune_escape":{"value":"0.3155024998230031"},"partiallyAliased":{"value":"XBA"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.20215999999999995"},"designation_date":{"value":"2022-09-14"},"Nextclade_pango":{"value":"XBA"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.893605040054489}},"branch_attrs":{"mutations":{"nuc":["G4181T","A4184G","T4321C","C6402T","C7124T","C8595T","C8986T","G9053T","T9344C","G9424A","T9534C","T10198C","A10447G","A10449C","A11201G","T11289C","T11291G","T11292G","A11332G","T12880C","G13812T","C14790T","C15026T","G15451A","T15714C","C16466T","T17410C","G18163A","C19220T","T19955C","G20055A","C21614T","T21618G","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","C21846T","G22017T","A22029-","G22030-","T22031-","T22032-","C22033-","A22034-","T22118C","G22899A","C22916A","T22917G","A22991G","G23040A","C24912T","T25000C","C25413T","C25469T","T25584C","T26060C","T26270C","G26577C","A26709G","T26767C","T26858C","G26959A","C27259A","C27382G","T27383A","C27384T","T27638C","A27663T","C27752T","T27807C","C27874T","G28248-","A28249-","T28250-","T28251-","T28252-","C28253-","T28271-","T28362G","T28363A","T28364G","T28365A","T28366A","T28367C","T28368G","T28369C","T28370A","A28461G","G29402T","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"E":["I9T"],"M":["E19Q","T63A","I82T","R146H"],"N":["-31E","-32R","-33S","D63G","D377Y","R413S"],"ORF1a":["A1306S","S1307G","P2046L","P2287S","T2777I","V2930L","F3027L","I3090T","H3395P","T3646A","-3675S","-3676G","-3677F"],"ORF1b":["M115I","A520V","G662S","P1000L","C1315R","V1566I","A1918V","I2163T"],"ORF3a":["S26L","I223T"],"ORF6":["L61D"],"ORF7a":["V82A","Q90H","T120I"],"ORF7b":["T40I"],"ORF8":["D119-","F120-"],"ORF9b":["-27E","-28N","-29A","T60A"],"S":["L18F","I19R","-24L","-25P","-26P","S27A","T95I","W152L","E156-","F157-","R158G","F186L","G446D","L452R","N477D","R493Q","T1117I"]},"labels":{"aa":"E: I9T; M: E19Q, T63A, I82T, R146H; N: -31E, -32R, -33S, D63G, D377Y, R413S; ORF1a: A1306S, S1307G, P2046L, P2287S, T2777I, V2930L, F3027L, I3090T, H3395P, T3646A, -3675S, -3676G, -3677F; ORF1b: M115I, A520V, G662S, P1000L, C1315R, V1566I, A1918V, I2163T; ORF3a: S26L, I223T; ORF6: L61D; ORF7a: V82A, Q90H, T120I; ORF7b: T40I; ORF8: D119-, F120-; ORF9b: -27E, -28N, -29A, T60A; S: L18F, I19R, -24L, -25P, -26P, S27A, T95I, W152L, E156-, F157-, R158G, F186L, G446D, L452R, N477D, R493Q, T1117I","spike_mutations":"L18F, I19R, -24L, -25P, -26P, S27A, T95I, W152L, E156-, F157-, R158G, F186L, G446D, L452R, N477D, R493Q, T1117I"}}},{"name":"XBD","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"XBD"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.4677"},"designation_date":{"value":"2022-10-12"},"Nextclade_pango":{"value":"XBD"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.585526233294406}},"branch_attrs":{"mutations":{"nuc":["C3796T","C3927T","C4586T","C5183T","C5192T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","G15451A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","G22898A","T22942G","T23019C","G23040A","G24620T","G26529A","T26858C","A27038G","C27259A","C27382G","T27383A","C27384T","C27889T","A28330G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"ORF1a":["S1221L","P1640S","L3201F","N4060S"],"ORF1b":["G662S"],"ORF6":["L61D"],"ORF9b":["D16G"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","G446S","N460K","F486S","R493Q","A1020S"]},"labels":{"aa":"M: D3N; ORF1a: S1221L, P1640S, L3201F, N4060S; ORF1b: G662S; ORF6: L61D; ORF9b: D16G; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486S, R493Q, A1020S","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486S, R493Q, A1020S"}}},{"name":"XBE","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"XBE"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-10-22"},"Nextclade_pango":{"value":"XBE"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":53},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.544035653019871}},"branch_attrs":{"mutations":{"nuc":["C1627T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12160A","G12310A","C16616A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G22599C","T22917G","T23018G","G23040A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27800T","C27889T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","T29734G","T29735A","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-","G29868A"],"M":["D3N"],"N":["E136D"],"ORF1b":["T1050N"],"ORF6":["L61D"],"S":["H69-","V70-","R346T","L452R","F486V","R493Q"]},"labels":{"aa":"M: D3N; N: E136D; ORF1b: T1050N; ORF6: L61D; S: H69-, V70-, R346T, L452R, F486V, R493Q","spike_mutations":"H69-, V70-, R346T, L452R, F486V, R493Q"}}},{"name":"XBG","node_attrs":{"div":22,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"XBG"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2022-11-14"},"Nextclade_pango":{"value":"XBG"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":56},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032656609309487}},"branch_attrs":{"mutations":{"nuc":["C44T","C9866T","C10116T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11665T","A19812G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T22304A","G22599C","T22917G","T23018G","G23040A","A24676G","T26180C","G26529A","T26858C","C27012T","C27259A","C27382G","T27383A","C27384T","C27513T","C27889T","A28330G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"ORF1a":["L3201F","T3284I"],"ORF3a":["I263T"],"ORF6":["L61D"],"ORF9b":["D16G"],"S":["Y248N","R346T","L452R","F486V","R493Q"]},"labels":{"aa":"M: D3N; ORF1a: L3201F, T3284I; ORF3a: I263T; ORF6: L61D; ORF9b: D16G; S: Y248N, R346T, L452R, F486V, R493Q","spike_mutations":"Y248N, R346T, L452R, F486V, R493Q"}}},{"name":"XBH","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":6},"immune_escape":{"value":"0.6338793782833749"},"partiallyAliased":{"value":"XBH"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.37244999999999995"},"designation_date":{"value":"2022-11-16"},"Nextclade_pango":{"value":"XBH"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.905571901305384}},"branch_attrs":{"mutations":{"nuc":["C7528T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C13730T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","C22786A","G22898A","T22942G","T23019C","G23040A","G25157A","C25416T","A26275G","T28362G","T28363A","T28364G","T28365A","T28366A","T28367C","T28368G","T28369C","T28370A","T29734G","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757G","T29758C","T29759G"],"E":["T11A"],"N":["-31E","-32R","-33S"],"ORF1a":["L3201F"],"ORF1b":["A88V"],"ORF9b":["-27E","-28N","-29A"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","S408R","G446S","N460K","F486S","R493Q","D1199N"]},"labels":{"aa":"E: T11A; N: -31E, -32R, -33S; ORF1a: L3201F; ORF1b: A88V; ORF9b: -27E, -28N, -29A; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, S408R, G446S, N460K, F486S, R493Q, D1199N","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, S408R, G446S, N460K, F486S, R493Q, D1199N"}}},{"name":"XBM","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6014234018422104"},"partiallyAliased":{"value":"XBM"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6697299999999999"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XBM"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":57},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.606494323227027}},"branch_attrs":{"mutations":{"nuc":["C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A19812G","G19891A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T22304A","G22599C","T22917G","T23018G","G23040A","C23202T","G24620T","G26529A","T26858C","A27038G","C27259A","C27382G","T27383A","C27384T","C27549T","C27889T","A28330G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-","G29868A"],"M":["D3N"],"ORF1a":["L3201F"],"ORF1b":["D2142N"],"ORF6":["L61D"],"ORF9b":["D16G"],"S":["Y248N","R346T","L452R","F486V","R493Q","T547I","A1020S"]},"labels":{"aa":"M: D3N; ORF1a: L3201F; ORF1b: D2142N; ORF6: L61D; ORF9b: D16G; S: Y248N, R346T, L452R, F486V, R493Q, T547I, A1020S","spike_mutations":"Y248N, R346T, L452R, F486V, R493Q, T547I, A1020S"}}},{"name":"XBN","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBN"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-01-14"},"Nextclade_pango":{"value":"XBN"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.34832029058903}},"branch_attrs":{"mutations":{"nuc":["A2863G","C3796T","C3927T","C4586T","C5183T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T16342C","T17859C","A19326G","A19459G","C19554T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23019C","T23031C","G23040A","C25416T","C25638T","A26275G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759G"],"E":["T11A"],"ORF1a":["S1221L","P1640S","L3201F"],"ORF1b":["G662S","S959P","I1998V"],"S":["V83A","Y144-","H146Q","Q183E","G213E","D339H","R346T","L368I","V445P","G446S","N460K","F486S","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: S1221L, P1640S, L3201F; ORF1b: G662S, S959P, I1998V; S: V83A, Y144-, H146Q, Q183E, G213E, D339H, R346T, L368I, V445P, G446S, N460K, F486S, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, D339H, R346T, L368I, V445P, G446S, N460K, F486S, F490S, R493Q"}}},{"name":"XBP","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"XBP"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.66401"},"designation_date":{"value":"2023-01-30"},"Nextclade_pango":{"value":"XBP"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254443334517171}},"branch_attrs":{"mutations":{"nuc":["G204A","C3796T","C3927T","C4586T","C5183T","C7303T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","C12952T","C13965T","C15277T","G15451A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","A22893C","T22917G","T22942A","T23018G","G23040A","T23773C","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759G"],"M":["D3N"],"N":["E136D"],"ORF1a":["S1221L","P1640S","L3201F","N4060S"],"ORF1b":["H604Y","G662S"],"ORF6":["L61D"],"ORF9b":["S10F"],"S":["K147E","W152R","F157L","I210V","K444T","L452R","N460K","F486V","R493Q"]},"labels":{"aa":"M: D3N; N: E136D; ORF1a: S1221L, P1640S, L3201F, N4060S; ORF1b: H604Y, G662S; ORF6: L61D; ORF9b: S10F; S: K147E, W152R, F157L, I210V, K444T, L452R, N460K, F486V, R493Q","spike_mutations":"K147E, W152R, F157L, I210V, K444T, L452R, N460K, F486V, R493Q"}}},{"name":"XBQ","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBQ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBQ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.946662572783287}},"branch_attrs":{"mutations":{"nuc":["C1627T","C3796T","C3927T","C4586T","C5183T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","G14829T","G15451A","G18583A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["S1221L","P1640S","L3201F","N4060S"],"ORF1b":["M454I","G662S","V1706I"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: S1221L, P1640S, L3201F, N4060S; ORF1b: M454I, G662S, V1706I; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q"}}},{"name":"XBR","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"XBR"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBR"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305581591441108}},"branch_attrs":{"mutations":{"nuc":["C1093T","G1440A","A1964G","C3796T","C3927T","C4586T","C5183T","A5844G","C8597T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T12440C","A12444G","G15451A","C21077T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","G22599C","C22855T","A22893C","T22917G","T22942A","T23018G","G23040A","G25471C","C25553T","T25569C","G26031A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"N":["E136D"],"ORF1a":["G392D","I567V","S1221L","P1640S","K1860R","L2778F","L3201F","N4060S"],"ORF1b":["G662S","T2537I"],"ORF3a":["D27H","A54V"],"ORF6":["L61D"],"ORF9b":["S10F"],"S":["K147E","W152R","F157L","R346T","K444T","L452R","N460K","F486V","R493Q"]},"labels":{"aa":"M: D3N; N: E136D; ORF1a: G392D, I567V, S1221L, P1640S, K1860R, L2778F, L3201F, N4060S; ORF1b: G662S, T2537I; ORF3a: D27H, A54V; ORF6: L61D; ORF9b: S10F; S: K147E, W152R, F157L, R346T, K444T, L452R, N460K, F486V, R493Q","spike_mutations":"K147E, W152R, F157L, R346T, K444T, L452R, N460K, F486V, R493Q"}}},{"name":"XBS","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"XBS"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBS"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.166907163653784}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","C2842T","C3796T","C3809T","C3927T","C4586T","C5183T","C6982T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","G15451A","T20748C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","G22599C","A22893C","T22917G","T22942A","T23018G","G23040A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"N":["E136D"],"ORF1a":["G82-","H83-","V84-","M85V","L1182F","S1221L","P1640S","L3201F","N4060S"],"ORF1b":["G662S"],"ORF6":["L61D"],"ORF9b":["S10F"],"S":["K147E","W152R","F157L","R346T","K444T","L452R","N460K","F486V","R493Q"]},"labels":{"aa":"M: D3N; N: E136D; ORF1a: G82-, H83-, V84-, M85V, L1182F, S1221L, P1640S, L3201F, N4060S; ORF1b: G662S; ORF6: L61D; ORF9b: S10F; S: K147E, W152R, F157L, R346T, K444T, L452R, N460K, F486V, R493Q","spike_mutations":"K147E, W152R, F157L, R346T, K444T, L452R, N460K, F486V, R493Q"}}},{"name":"XBT","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6115138664553013"},"partiallyAliased":{"value":"XBT"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.64255"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBT"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847021480257006}},"branch_attrs":{"mutations":{"nuc":["C829T","C1627T","A3207G","G4288A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","G15451A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","T22917G","T23018G","G23040A","G23587A","G26529A","T26858C","C27012T","C27259A","C27382G","T27383A","C27384T","C27513T","C27889T","A28330G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"ORF1a":["D981G","L3201F","N4060S"],"ORF1b":["G662S"],"ORF6":["L61D"],"ORF9b":["D16G"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","L452R","F486V","R493Q"]},"labels":{"aa":"M: D3N; ORF1a: D981G, L3201F, N4060S; ORF1b: G662S; ORF6: L61D; ORF9b: D16G; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, L452R, F486V, R493Q","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, L452R, F486V, R493Q"}}},{"name":"XBU","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8391726960276329"},"partiallyAliased":{"value":"XBU"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.74825"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBU"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167313909487077}},"branch_attrs":{"mutations":{"nuc":["C3796T","C3927T","C4586T","C5183T","C5192T","C9866T","C11124T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","T13324C","G15451A","G18583A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","A22893C","T22917G","T22942A","T23018G","G23040A","A26275G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["S1221L","P1640S","L3201F","A3620V","N4060S"],"ORF1b":["G662S","V1706I"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","K444T","L452R","N460K","F486V","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: S1221L, P1640S, L3201F, A3620V, N4060S; ORF1b: G662S, V1706I; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, K444T, L452R, N460K, F486V, R493Q","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, K444T, L452R, N460K, F486V, R493Q"}}},{"name":"XBV","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBV"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.32919999999999994"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBV"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.407139570589559}},"branch_attrs":{"mutations":{"nuc":["C1627T","A8040G","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12160A","G12310A","G15957T","C16616A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23019C","T23031C","G23040A","C23123A","A23223G","A24170G","C25416T","A26275G","G27915T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"E":["T11A"],"ORF1a":["D2592G"],"ORF1b":["T1050N"],"ORF8":["G8*"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","N460K","F486S","F490S","R493Q","P521T","E554G","I870V"]},"labels":{"aa":"E: T11A; ORF1a: D2592G; ORF1b: T1050N; ORF8: G8*; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486S, F490S, R493Q, P521T, E554G, I870V","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486S, F490S, R493Q, P521T, E554G, I870V"}}},{"name":"XBW","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBW"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBW"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.905314506704347}},"branch_attrs":{"mutations":{"nuc":["A405G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T16342C","T17124C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","T22612C","C22664A","G22895C","T22896C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C24130T","C25416T","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","G29260A","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"N":["E136D"],"ORF1a":["K47R","L3201F"],"ORF1b":["G662S","S959P"],"ORF6":["L61D"],"ORF9b":["S10F"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"M: D3N; N: E136D; ORF1a: K47R, L3201F; ORF1b: G662S, S959P; ORF6: L61D; ORF9b: S10F; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q"}}},{"name":"XBY","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBY"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBY"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.507780017347863}},"branch_attrs":{"mutations":{"nuc":["C3796T","C3927T","C4586T","C5183T","C5812T","C9532T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","G15451A","G19962T","C21054T","G21305A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","T28137A","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["S1221L","P1640S","L3201F","N4060S"],"ORF1b":["G662S","R2613H"],"ORF8":["S82T"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: S1221L, P1640S, L3201F, N4060S; ORF1b: G662S, R2613H; ORF8: S82T; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q"}}},{"name":"XBZ","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8313780783921618"},"partiallyAliased":{"value":"XBZ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.77543"},"designation_date":{"value":"2023-03-28"},"Nextclade_pango":{"value":"XBZ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":60},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.700332352414882}},"branch_attrs":{"mutations":{"nuc":["C1627T","T2954C","C6040T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11750T","G12160A","T14257C","G16935A","A17039G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","T21992-","A21993-","T21994-","G22599C","C22858T","A22893C","T22917G","T22942A","T23018G","G23040A","C23086T","G26428T","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","C28770T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759G"],"E":["V62F"],"M":["D3N"],"N":["E136D","T166I"],"ORF1a":["L3829F"],"ORF1b":["Y264H","M1156I","N1191S"],"ORF6":["L61D"],"ORF9b":["S10F"],"S":["H69-","V70-","Y144-","R346T","K444T","L452R","N460K","F486V","R493Q"]},"labels":{"aa":"E: V62F; M: D3N; N: E136D, T166I; ORF1a: L3829F; ORF1b: Y264H, M1156I, N1191S; ORF6: L61D; ORF9b: S10F; S: H69-, V70-, Y144-, R346T, K444T, L452R, N460K, F486V, R493Q","spike_mutations":"H69-, V70-, Y144-, R346T, K444T, L452R, N460K, F486V, R493Q"}}},{"name":"XCA","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8391726960276329"},"partiallyAliased":{"value":"XCA"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.74825"},"designation_date":{"value":"2023-04-03"},"Nextclade_pango":{"value":"XCA"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129533130361601}},"branch_attrs":{"mutations":{"nuc":["C2062T","C3796T","C3927T","C4586T","C5183T","C5192T","C5748A","T9454C","C9866T","C11124T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","T13324C","G15451A","G18583A","C19017T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21893A","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","C22747T","A22893C","T22917G","T22942A","T23018G","G23040A","C23595T","T25975C","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-","T29760-","A29761-","C29762-","A29763-","G29764-"],"M":["D3N"],"N":["E136D"],"ORF1a":["S1221L","P1640S","T1828N","L3201F","A3620V","N4060S"],"ORF1b":["G662S","V1706I"],"ORF3a":["S195P"],"ORF6":["L61D"],"ORF9b":["S10F"],"S":["D111N","K147E","W152R","F157L","I210V","G257S","D339H","R346T","K444T","L452R","N460K","F486V","R493Q","T678I"]},"labels":{"aa":"M: D3N; N: E136D; ORF1a: S1221L, P1640S, T1828N, L3201F, A3620V, N4060S; ORF1b: G662S, V1706I; ORF3a: S195P; ORF6: L61D; ORF9b: S10F; S: D111N, K147E, W152R, F157L, I210V, G257S, D339H, R346T, K444T, L452R, N460K, F486V, R493Q, T678I","spike_mutations":"D111N, K147E, W152R, F157L, I210V, G257S, D339H, R346T, K444T, L452R, N460K, F486V, R493Q, T678I"}}},{"name":"XCB","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.630694401494532"},"partiallyAliased":{"value":"XCB"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.41968"},"designation_date":{"value":"2023-04-14"},"Nextclade_pango":{"value":"XCB"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606544588486038}},"branch_attrs":{"mutations":{"nuc":["C1627T","A11126G","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12160A","G12311A","C14724T","G18651A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G22302-","T22303-","T22304-","T22348A","T22813G","A22893C","T22917G","T22942A","T23018G","G23040A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27600T","C27889T","T28282C","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"N":["E136D"],"ORF1a":["M3621V","A4016T"],"ORF6":["L61D"],"ORF9b":["S10F"],"S":["H69-","V70-","S247-","Y248N","N417K","K444T","L452R","N460K","F486V","R493Q"]},"labels":{"aa":"M: D3N; N: E136D; ORF1a: M3621V, A4016T; ORF6: L61D; ORF9b: S10F; S: H69-, V70-, S247-, Y248N, N417K, K444T, L452R, N460K, F486V, R493Q","spike_mutations":"H69-, V70-, S247-, Y248N, N417K, K444T, L452R, N460K, F486V, R493Q"}}},{"name":"XCC","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XCC"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XCC"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.294634080129163}},"branch_attrs":{"mutations":{"nuc":["C1545T","C3796T","C3857A","C3927T","C4586T","C5183T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","C12789T","G15451A","C15738T","T15939C","T16342C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["A427V","Q1198K","S1221L","P1640S","L3201F","N4060S","T4175I"],"ORF1b":["G662S","S959P"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: A427V, Q1198K, S1221L, P1640S, L3201F, N4060S, T4175I; ORF1b: G662S, S959P; ORF8: G8*; ORF9b: I5T; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q"}}},{"name":"XCD","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XCD"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.95377"},"designation_date":{"value":"2023-06-08"},"Nextclade_pango":{"value":"XCD"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.662963275261264}},"branch_attrs":{"mutations":{"nuc":["A405G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T16342C","T17859C","T18006C","A19173G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22203A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","A22995T","T23018C","T23019C","T23031C","G23040A","G26529A","T26858C","C27259A","C27382G","T27383A","C27384T","C27889T","G28077T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28657T","G28681T","C29367T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"N":["E136D","P365L"],"ORF1a":["K47R","L3201F"],"ORF1b":["G662S","S959P"],"ORF6":["L61D"],"ORF8":["V62L"],"ORF9b":["S10F"],"S":["V83A","Y144-","H146Q","Q183E","G213E","R214H","G252V","D339H","R346T","L368I","V445P","G446S","N460K","K478I","F486P","F490S","R493Q"]},"labels":{"aa":"M: D3N; N: E136D, P365L; ORF1a: K47R, L3201F; ORF1b: G662S, S959P; ORF6: L61D; ORF8: V62L; ORF9b: S10F; S: V83A, Y144-, H146Q, Q183E, G213E, R214H, G252V, D339H, R346T, L368I, V445P, G446S, N460K, K478I, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, R214H, G252V, D339H, R346T, L368I, V445P, G446S, N460K, K478I, F486P, F490S, R493Q"}}},{"name":"XCE","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XCE"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"XCE"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["C44T","C1931A","T2954C","G9424A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","C15810T","T15939C","T16342C","T17859C","G18811A","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","A22161G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"E":["T11A"],"ORF1a":["Q556K","L3201F"],"ORF1b":["G662S","S959P","D1782N"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["V83A","Y144-","H146Q","Q183E","Y200C","G213E","G252V","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: Q556K, L3201F; ORF1b: G662S, S959P, D1782N; ORF8: G8*; ORF9b: I5T; S: V83A, Y144-, H146Q, Q183E, Y200C, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, Y200C, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q"}}},{"name":"XCG","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XCG"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.16254"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XCG"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.247115446326187}},"branch_attrs":{"mutations":{"nuc":["C1627T","A8170G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T16342C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","T22813G","G22895C","T22896C","G22898A","T22942G","T23019C","T23031C","G23040A","C25416T","A26275G","G27915T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["L3201F"],"ORF1b":["G662S","S959P"],"ORF8":["G8*"],"S":["V83A","Y144-","Q183E","G213E","G252V","D339H","R346T","L368I","N417K","V445P","G446S","N460K","F486S","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: L3201F; ORF1b: G662S, S959P; ORF8: G8*; S: V83A, Y144-, Q183E, G213E, G252V, D339H, R346T, L368I, N417K, V445P, G446S, N460K, F486S, F490S, R493Q","spike_mutations":"V83A, Y144-, Q183E, G213E, G252V, D339H, R346T, L368I, N417K, V445P, G446S, N460K, F486S, F490S, R493Q"}}},{"name":"XCJ","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XCJ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"XCJ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16734878087591}},"branch_attrs":{"mutations":{"nuc":["C44T","A405G","C1063T","C6312T","A6616G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","G22103C","C22109G","G22200A","A22320G","G22577C","G22599C","C22664A","T22843C","G22895C","T22896C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C23123T","C25416T","A26275G","C27431T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28770T","G29706T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"N":["T166I"],"ORF1a":["K47R","T2016I","L3201F"],"ORF1b":["G662S"],"ORF7a":["A13V"],"S":["V83A","Y144-","H146Q","G181R","Q183E","G213E","D253G","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q","P521S"]},"labels":{"aa":"E: T11A; N: T166I; ORF1a: K47R, T2016I, L3201F; ORF1b: G662S; ORF7a: A13V; S: V83A, Y144-, H146Q, G181R, Q183E, G213E, D253G, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, P521S","spike_mutations":"V83A, Y144-, H146Q, G181R, Q183E, G213E, D253G, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, P521S"}}},{"name":"XCK","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XCK"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"XCK"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430454536550249}},"branch_attrs":{"mutations":{"nuc":["C44T","A405G","T2128C","G3242A","C5512T","G5720A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11956T","C12789T","C12970T","G15451A","C15738T","T15939C","T16342C","T17859C","T18096C","A19326G","G19962T","G20060T","A21137G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22928C","T22942G","A22995G","T23018C","T23019C","T23031C","G23040A","C23664T","G26158-","T26159-","T26160-","A26161-","A26162-","T26163-","C26164-","C26165-","A26166-","G26167-","T26168-","A26169-","G26529A","T26858C","G26951C","C27259A","C27382G","T27383A","C27384T","C27889T","C28163A","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28681T","T29726-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-","G29779T"],"M":["D3N"],"N":["E136D"],"ORF1a":["K47R","G993S","G1819S","L3201F","T4175I"],"ORF1b":["G662S","S959P","S2198I","K2557R"],"ORF3a":["V255-","V256-","N257-","P258-"],"ORF6":["L61D"],"ORF8":["C90*"],"ORF9b":["S10F"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","F456L","N460K","K478R","F486P","F490S","R493Q","A701V"]},"labels":{"aa":"M: D3N; N: E136D; ORF1a: K47R, G993S, G1819S, L3201F, T4175I; ORF1b: G662S, S959P, S2198I, K2557R; ORF3a: V255-, V256-, N257-, P258-; ORF6: L61D; ORF8: C90*; ORF9b: S10F; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, K478R, F486P, F490S, R493Q, A701V","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, K478R, F486P, F490S, R493Q, A701V"}}},{"name":"XCL","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XCL"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.89509"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"XCL"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.677304555836829}},"branch_attrs":{"mutations":{"nuc":["A405G","C7417T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","C15755G","T15939C","T16342C","T17124C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22624T","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","T23018C","T23019C","T23031C","G23040A","G23093A","C23741T","A25045G","C25046T","C25416T","A26275G","C27059T","G27915T","C28005T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","L3201F"],"ORF1b":["G662S","S763C","S959P"],"ORF8":["G8*","P38S"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q","V511I","P1162S"]},"labels":{"aa":"E: T11A; ORF1a: K47R, L3201F; ORF1b: G662S, S763C, S959P; ORF8: G8*, P38S; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, V511I, P1162S","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, V511I, P1162S"}}},{"name":"XCM","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"XCM"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-09-05"},"Nextclade_pango":{"value":"XCM"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.930012503691707}},"branch_attrs":{"mutations":{"nuc":["G331T","A405G","C4234T","C5730T","G6536A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T13560C","G15451A","C15738T","T15939C","T17661C","T17859C","A18879G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22033A","A22115G","A22190G","G22331A","G22577C","G22599C","A22893C","G22898A","T22917G","G22927T","T22928C","T22942G","T23019C","G23040A","C24134A","A24373G","T24991A","C25416T","G25606A","C25721T","T25959C","A26275G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A29558G","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["Q22H","K47R","T1822I","G2091S","L3201F"],"ORF1b":["G662S"],"ORF3a":["A72T","A110V"],"S":["V83A","Y144-","H146Q","F157L","N185D","I210V","G257S","D339H","R346T","K444T","G446S","L452R","L455F","F456L","N460K","F486S","R493Q","L858I"]},"labels":{"aa":"E: T11A; ORF1a: Q22H, K47R, T1822I, G2091S, L3201F; ORF1b: G662S; ORF3a: A72T, A110V; S: V83A, Y144-, H146Q, F157L, N185D, I210V, G257S, D339H, R346T, K444T, G446S, L452R, L455F, F456L, N460K, F486S, R493Q, L858I","spike_mutations":"V83A, Y144-, H146Q, F157L, N185D, I210V, G257S, D339H, R346T, K444T, G446S, L452R, L455F, F456L, N460K, F486S, R493Q, L858I"}}},{"name":"XCN","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.319590768088469"},"partiallyAliased":{"value":"XCN"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18525999999999987"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"XCN"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["C44T","C337T","C1142T","C1471T","C1513T","C1686T","T2372C","C3796T","C3927T","C4586T","C5183T","C7318T","C8782T","G8849A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T11515C","A12444G","C14790T","T14961C","G15451A","C20235T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C21807A","C21910T","A22001G","T22016C","C22033A","A22121G","A22190G","G22331A","G22577C","G22599C","A22629C","C22664A","G22895C","T22896C","G22898A","T22930A","T22942G","T23018C","T23019C","T23031C","G23040A","T23332C","C23453T","C25416T","C25572T","A26275G","A27507C","C27635T","G27915T","C28253T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29625T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["L293F","A474V","S1221L","P1640S","V2862M","L3201F","N4060S"],"ORF1b":["G662S"],"ORF7a":["S81L"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["P82H","K147E","W152R","F157L","K187E","I210V","G257S","D339H","R346T","K356T","L368I","V445P","G446S","F456L","N460K","F486P","F490S","R493Q","P631S"]},"labels":{"aa":"E: T11A; ORF1a: L293F, A474V, S1221L, P1640S, V2862M, L3201F, N4060S; ORF1b: G662S; ORF7a: S81L; ORF8: G8*; ORF9b: I5T; S: P82H, K147E, W152R, F157L, K187E, I210V, G257S, D339H, R346T, K356T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q, P631S","spike_mutations":"P82H, K147E, W152R, F157L, K187E, I210V, G257S, D339H, R346T, K356T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q, P631S"}}},{"name":"XCP","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XCP"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"XCP"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978318039991315}},"branch_attrs":{"mutations":{"nuc":["A405G","C2334T","C3622T","G5720A","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A11537G","C12789T","A14634G","G15451A","C15738T","T15939C","T16342C","T17124C","T17859C","C19185T","A19326G","C19488T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","C22986T","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","G27915T","C28087T","T28282C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"E":["T11A"],"ORF1a":["K47R","A690V","G1819S","A3143V","L3201F","I3758V","T4175I"],"ORF1b":["G662S","S959P"],"ORF8":["G8*","A65V"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","A475V","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, A690V, G1819S, A3143V, L3201F, I3758V, T4175I; ORF1b: G662S, S959P; ORF8: G8*, A65V; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, A475V, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, A475V, F486P, F490S, R493Q"}}},{"name":"XCQ","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XCQ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"XCQ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.265399247309988}},"branch_attrs":{"mutations":{"nuc":["A405G","C4234T","G6536A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A13187G","G15451A","C15738T","T15939C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","A22320G","C22388T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C23123T","C23757T","C25416T","A26275G","G27915T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"E":["T11A"],"ORF1a":["K47R","G2091S","L3201F","I4308V"],"ORF1b":["G662S"],"ORF8":["G8*"],"S":["V83A","Y144-","H146Q","Q183E","G213E","D253G","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q","P521S","T732I"]},"labels":{"aa":"E: T11A; ORF1a: K47R, G2091S, L3201F, I4308V; ORF1b: G662S; ORF8: G8*; S: V83A, Y144-, H146Q, Q183E, G213E, D253G, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, P521S, T732I","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, D253G, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, P521S, T732I"}}},{"name":"XCR","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XCR"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"XCR"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777429636797247}},"branch_attrs":{"mutations":{"nuc":["A405G","C1973T","C7564T","T8737C","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12467T","C13405T","G15451A","C15738T","T15939C","T16342C","T17124C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22624T","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","T23018C","T23019C","T23031C","G23040A","C23280T","C23673T","A24373C","A25359G","C25416T","A26275G","A26708G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A28447G","C29386T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","L3201F","A4068S"],"ORF1b":["G662S","S959P"],"ORF8":["G8*"],"ORF9b":["I5T","N55S"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q","T573I","S704L","K1266R"]},"labels":{"aa":"E: T11A; ORF1a: K47R, L3201F, A4068S; ORF1b: G662S, S959P; ORF8: G8*; ORF9b: I5T, N55S; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, T573I, S704L, K1266R","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, T573I, S704L, K1266R"}}},{"name":"XCS","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XCS"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XCS"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.50979442794143}},"branch_attrs":{"mutations":{"nuc":["A405G","C1973T","C7564T","T8737C","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12253A","G12467T","G15451A","C15738T","T15939C","T16342C","C17010T","T17124C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22624T","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","T23018C","T23019C","T23031C","G23040A","C23673T","T24424A","C25416T","A26275G","A27669G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A28447G","A29221G","C29386T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","L3201F","A4068S"],"ORF1b":["G662S","S959P"],"ORF8":["G8*"],"ORF9b":["I5T","N55S"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q","S704L","H954Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, L3201F, A4068S; ORF1b: G662S, S959P; ORF8: G8*; ORF9b: I5T, N55S; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, S704L, H954Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, S704L, H954Q"}}},{"name":"XCU","node_attrs":{"div":65,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.9307698749546415"},"partiallyAliased":{"value":"XCU"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.8835"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XCU"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5098299806803395}},"branch_attrs":{"mutations":{"nuc":["C44T","C1437T","T3478C","A4184G","T4321C","C4586T","C4893T","C5184T","A5584G","C6196T","G6576T","G7058A","G7091A","A7766G","C9073T","T9344C","G9424A","T9534C","C9891T","T10198C","A10447G","A10449C","T11289C","T11291G","T11292G","T11418C","C11514T","T12880C","C13019T","T15030C","C15237T","G15451A","T15714C","C16466T","C16616T","A17207G","T17410C","G18163A","A19890G","T19955C","G20055A","T21634A","T21636C","T21637C","T21638C","T21639C","T21641G","T21992-","A21993-","T21994-","A22029-","G22030-","T22031-","T22032-","C22033-","A22034-","A22116G","C22188T","T22197C","G22200T","G22205C","C22227T","G22289-","C22290-","T22291-","T22292-","T22293-","A22294-","C22329T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","G22927A","T22942G","T23018C","T23019C","T23031C","G23040A","T23042C","C23123A","C25416T","A26275G","C26606T","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G28376A","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"N":["A35T"],"ORF1a":["S391F","S1307G","T1543I","P1640L","S2104I","G2265S","V2276I","I2501V","F3027L","I3090T","A3209V","H3395P","-3675S","-3676G","-3677F","V3718A","T3750I"],"ORF1b":["G662S","P1000L","T1050I","Y1247C","C1315R","V1566I","I2163T"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["-24L","-25S","-26P","S27A","Y144-","E156-","F157-","R158G","N185S","P209L","L212S","G213V","D215H","A222V","L242-","A243-","S256L","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q","S494P","P521T"]},"labels":{"aa":"E: T11A; N: A35T; ORF1a: S391F, S1307G, T1543I, P1640L, S2104I, G2265S, V2276I, I2501V, F3027L, I3090T, A3209V, H3395P, -3675S, -3676G, -3677F, V3718A, T3750I; ORF1b: G662S, P1000L, T1050I, Y1247C, C1315R, V1566I, I2163T; ORF8: G8*; ORF9b: I5T; S: -24L, -25S, -26P, S27A, Y144-, E156-, F157-, R158G, N185S, P209L, L212S, G213V, D215H, A222V, L242-, A243-, S256L, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, S494P, P521T","spike_mutations":"-24L, -25S, -26P, S27A, Y144-, E156-, F157-, R158G, N185S, P209L, L212S, G213V, D215H, A222V, L242-, A243-, S256L, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, S494P, P521T"}}},{"name":"XCV","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XCV"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XCV"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.664726861525186}},"branch_attrs":{"mutations":{"nuc":["C44T","A405G","T5422C","C7044A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12789T","G15451A","C15738T","T15939C","T16342C","A16878T","T17859C","A18492G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21718T","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","C22480T","C22570T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22930A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","G27065A","G27915T","A28182G","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A28447G","C29386T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759G"],"E":["T11A"],"ORF1a":["K47R","P2260H","L3201F","T4175I"],"ORF1b":["G662S","S959P"],"ORF8":["G8*","S97G"],"ORF9b":["I5T","N55S"],"S":["Q52H","V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","F456L","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, P2260H, L3201F, T4175I; ORF1b: G662S, S959P; ORF8: G8*, S97G; ORF9b: I5T, N55S; S: Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q","spike_mutations":"Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q"}}},{"name":"XCW","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XCW"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XCW"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208799985016358}},"branch_attrs":{"mutations":{"nuc":["A405G","C4234T","T6394C","G6536A","G8863T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T14305C","G15451A","C15738T","T15939C","T17859C","G18636A","T18882C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","A22190-","T22191-","T22192-","G22200A","A22320G","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C23123T","C25416T","A26275G","C27513T","C27684T","G27915T","T28034C","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A28447G","C29386T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","G2091S","L3201F"],"ORF1b":["Y280H","G662S"],"ORF8":["G8*"],"ORF9b":["I5T","N55S"],"S":["V83A","Y144-","H146Q","Q183E","I210-","G213E","D253G","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q","P521S"]},"labels":{"aa":"E: T11A; ORF1a: K47R, G2091S, L3201F; ORF1b: Y280H, G662S; ORF8: G8*; ORF9b: I5T, N55S; S: V83A, Y144-, H146Q, Q183E, I210-, G213E, D253G, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, P521S","spike_mutations":"V83A, Y144-, H146Q, Q183E, I210-, G213E, D253G, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q, P521S"}}},{"name":"XCY","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XCY"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"XCY"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509717710525144}},"branch_attrs":{"mutations":{"nuc":["A405G","C1889T","C2334T","G5720A","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12789T","G15451A","C15738T","T15939C","T16342C","A16878T","T17859C","A18492G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21718T","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22624T","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","C22986T","T23018C","T23019C","T23031C","G23040A","A25045G","C25416T","A26275G","C27059T","G27915T","C28005T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","R542C","A690V","G1819S","A3143V","L3201F","T4175I"],"ORF1b":["G662S","S959P"],"ORF8":["G8*","P38S"],"S":["Q52H","V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","A475V","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, R542C, A690V, G1819S, A3143V, L3201F, T4175I; ORF1b: G662S, S959P; ORF8: G8*, P38S; S: Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, A475V, F486P, F490S, R493Q","spike_mutations":"Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, A475V, F486P, F490S, R493Q"}}},{"name":"XCZ","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XCZ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"XCZ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062659251597256}},"branch_attrs":{"mutations":{"nuc":["C44T","A405G","C2334T","G5720A","C6541T","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12789T","G13627A","A15436G","G15451A","C15738T","T15939C","T16342C","A16878T","T17859C","A18492G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","T22609G","C22624T","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","T23018C","T23019C","T23031C","G23040A","C23280T","C23673T","A25045G","C25416T","C25658T","A26275G","C26735T","C27059T","G27915T","C28005T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28519T","C28657T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","A690V","G1819S","A3143V","L3201F","T4175I"],"ORF1b":["D54N","M657V","G662S","S959P"],"ORF3a":["T89I"],"ORF8":["G8*","P38S"],"ORF9b":["T79I"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q","T573I","S704L"]},"labels":{"aa":"E: T11A; ORF1a: K47R, A690V, G1819S, A3143V, L3201F, T4175I; ORF1b: D54N, M657V, G662S, S959P; ORF3a: T89I; ORF8: G8*, P38S; ORF9b: T79I; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, T573I, S704L","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, T573I, S704L"}}},{"name":"XDB","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XDB"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-18"},"Nextclade_pango":{"value":"XDB"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.471415393309687}},"branch_attrs":{"mutations":{"nuc":["A405G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11750T","C11956T","T12730A","A14856G","G15451A","C15738T","T15939C","G15982A","T16342C","T17859C","G18703T","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","A22101T","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","A22995G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"E":["T11A"],"ORF1a":["K47R","L3201F","L3829F"],"ORF1b":["G662S","V839I","S959P","D1746Y"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["V83A","Y144-","H146Q","E180V","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","N460K","K478R","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, L3201F, L3829F; ORF1b: G662S, V839I, S959P, D1746Y; ORF8: G8*; ORF9b: I5T; S: V83A, Y144-, H146Q, E180V, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, K478R, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, E180V, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, K478R, F486P, F490S, R493Q"}}},{"name":"XDC","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XDC"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-18"},"Nextclade_pango":{"value":"XDC"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.343474318094315}},"branch_attrs":{"mutations":{"nuc":["A405G","C2110T","C2334T","G5720A","C6541T","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12789T","G13627A","G15451A","C15738T","C15763T","T15939C","T16342C","A16878T","T17859C","A18492G","A19326G","C21036T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21718T","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","C22480T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","G22927T","T22930A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","C25572T","A26275G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","A28447G","C29386T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","A690V","G1819S","A3143V","L3201F","T4175I"],"ORF1b":["D54N","G662S","S959P"],"ORF8":["G8*"],"ORF9b":["I5T","N55S"],"S":["Q52H","V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, A690V, G1819S, A3143V, L3201F, T4175I; ORF1b: D54N, G662S, S959P; ORF8: G8*; ORF9b: I5T, N55S; S: Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q","spike_mutations":"Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q"}}},{"name":"XDE","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XDE"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.42535999999999996"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"XDE"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208761621473919}},"branch_attrs":{"mutations":{"nuc":["A405G","C541T","C1170T","C6501A","C7113T","C9866T","A10042G","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12473T","C12924T","G15451A","C15738T","T15939C","T16342C","T17859C","A19326G","T21363C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","A22995T","T23018C","T23019C","T23031C","G23040A","G23222A","C24034T","C25416T","A26275G","A26612G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29535T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","S302F","P2079Q","T2283I","L3201F","P4220L"],"ORF1b":["G662S","S959P"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","K478I","F486P","F490S","R493Q","E554K"]},"labels":{"aa":"E: T11A; ORF1a: K47R, S302F, P2079Q, T2283I, L3201F, P4220L; ORF1b: G662S, S959P; ORF8: G8*; ORF9b: I5T; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, K478I, F486P, F490S, R493Q, E554K","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, K478I, F486P, F490S, R493Q, E554K"}}},{"name":"XDF","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XDF"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"XDF"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907769989352378}},"branch_attrs":{"mutations":{"nuc":["C44T","C335T","A405G","T3453C","G5720A","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A11782G","C12789T","G15451A","C15738T","T15939C","T16342C","A16878T","T17859C","A18492G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21718T","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","C22480T","C22570T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22930A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","A27507C","G27666T","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T28382C","C29625T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"N":["S37P"],"ORF1a":["R24C","K47R","V1063A","G1819S","A3143V","L3201F","T4175I"],"ORF1b":["G662S","S959P"],"ORF7a":["E91D"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["Q52H","V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","F456L","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; N: S37P; ORF1a: R24C, K47R, V1063A, G1819S, A3143V, L3201F, T4175I; ORF1b: G662S, S959P; ORF7a: E91D; ORF8: G8*; ORF9b: I5T; S: Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q","spike_mutations":"Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q"}}},{"name":"XDG","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XDG"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"XDG"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731678730296696}},"branch_attrs":{"mutations":{"nuc":["C44T","A405G","C547T","C1758T","T4579A","T4690C","T4930C","G5720A","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11518T","C12789T","G15451A","C15738T","T15939C","T16342C","A16878T","T16905C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","C22480T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22930A","T22942G","T23018C","T23019C","T23031C","G23040A","A23598G","C25416T","A25744G","A26275G","A27507C","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28754T","C29625T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"N":["L161F"],"ORF1a":["K47R","A498V","G1819S","A3143V","L3201F","T4175I"],"ORF1b":["G662S","S959P"],"ORF3a":["I118V"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","F456L","N460K","F486P","F490S","R493Q","K679R"]},"labels":{"aa":"E: T11A; N: L161F; ORF1a: K47R, A498V, G1819S, A3143V, L3201F, T4175I; ORF1b: G662S, S959P; ORF3a: I118V; ORF8: G8*; ORF9b: I5T; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q, K679R","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q, K679R"}}},{"name":"XDH","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XDH"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"XDH"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["T2992A","C3796T","C3927T","C4586T","T4744C","C5183T","T7477C","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T11515C","A12444G","C13335T","G15451A","C20235T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A21987G","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","A22629C","C22664A","G22895C","T22896C","G22898A","G22927A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["D909E","S1221L","P1640S","L3201F","N4060S","A4357V"],"ORF1b":["G662S"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["D142G","K147E","W152R","F157L","I210V","G257S","D339H","R346T","K356T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: D909E, S1221L, P1640S, L3201F, N4060S, A4357V; ORF1b: G662S; ORF8: G8*; ORF9b: I5T; S: D142G, K147E, W152R, F157L, I210V, G257S, D339H, R346T, K356T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"D142G, K147E, W152R, F157L, I210V, G257S, D339H, R346T, K356T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q"}}},{"name":"XDJ","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XDJ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XDJ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":826.5625},"placement_prior":{"value":-5.0784662165213525}},"branch_attrs":{"mutations":{"nuc":["A405G","C8947T","C9866T","A10861G","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11750T","C11956T","A12397G","T12730A","A14856G","G15451A","C15738T","T15939C","T16342C","A16878T","T17859C","A18492G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21718T","T21810C","T21992-","A21993-","T21994-","C22000A","C22033A","C22109G","G22200A","G22317T","C22480T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","G22927T","T22930A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","C25572T","A26275G","A27507C","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","G29081T","C29625T","A29700G","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"N":["V270L"],"ORF1a":["K47R","L3201F","L3829F"],"ORF1b":["G662S","S959P"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["Q52H","V83A","Y144-","H146Q","F157L","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; N: V270L; ORF1a: K47R, L3201F, L3829F; ORF1b: G662S, S959P; ORF8: G8*; ORF9b: I5T; S: Q52H, V83A, Y144-, H146Q, F157L, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q","spike_mutations":"Q52H, V83A, Y144-, H146Q, F157L, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q"}}},{"name":"XDK","node_attrs":{"div":58,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"XDK"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XDK"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":86},"qc.overallScore":{"value":189.0625},"placement_prior":{"value":-5.208799985016358}},"branch_attrs":{"mutations":{"nuc":["A405G","C5314T","A6183G","A7842G","C8293T","G8393A","C9142T","G11042T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G11727A","C11747T","C12789T","C12815T","T13339C","T15756A","A18492G","C18894T","C21622T","G21624C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C21711T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G21941T","T21992-","A21993-","T21994-","T22032C","C22033A","A22034G","A22194-","T22195-","T22196-","C22208T","C22295A","C22353A","A22556G","G22577C","A22629C","G22770A","G22895C","T22896A","G22898A","A22910G","C22916T","T22917G","T22926C","T22942A","T23005A","G23009-","T23010-","T23011-","G23012A","C23013A","T23018C","T23019C","G23040A","G23222A","C23271T","C23277T","C23423T","A23604G","C24378T","C24990T","C25207T","G26529C","A26610G","C26681T","C26833T","T27810C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28958A","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3H","T30A","A104V"],"N":["Q229K"],"ORF1a":["K47R","K1973R","N2526S","A2710T","V3593F","R3821K","T4175I"],"ORF7b":["F19L"],"S":["R21T","S50L","H69-","V70-","V127F","Y144-","F157S","R158G","N211-","L212I","L216F","H245N","A264D","I332V","D339H","K356T","R403K","V445H","G446S","N450D","L452W","L455S","N460K","N481K","V483-","A484K","F486P","R493Q","E554K","A570V","T572I","P621S","H681R","S939F","P1143L"]},"labels":{"aa":"M: D3H, T30A, A104V; N: Q229K; ORF1a: K47R, K1973R, N2526S, A2710T, V3593F, R3821K, T4175I; ORF7b: F19L; S: R21T, S50L, H69-, V70-, V127F, Y144-, F157S, R158G, N211-, L212I, L216F, H245N, A264D, I332V, D339H, K356T, R403K, V445H, G446S, N450D, L452W, L455S, N460K, N481K, V483-, A484K, F486P, R493Q, E554K, A570V, T572I, P621S, H681R, S939F, P1143L","spike_mutations":"R21T, S50L, H69-, V70-, V127F, Y144-, F157S, R158G, N211-, L212I, L216F, H245N, A264D, I332V, D339H, K356T, R403K, V445H, G446S, N450D, L452W, L455S, N460K, N481K, V483-, A484K, F486P, R493Q, E554K, A570V, T572I, P621S, H681R, S939F, P1143L"}}},{"name":"XDL","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XDL"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2024-01-08"},"Nextclade_pango":{"value":"XDL"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":17.361111},"placement_prior":{"value":-5.004668891816874}},"branch_attrs":{"mutations":{"nuc":["A405G","C2334T","C2650T","G5720A","C6541T","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12789T","G13627A","G15451A","C15738T","T15939C","C15981T","T16342C","A16482C","A16878T","T17859C","C17976T","A18492G","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21718T","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","C22480T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","G22927T","T22930A","T22942G","T23018C","T23019C","T23031C","G23040A","T24903C","C25416T","C25572T","A26275G","A27507C","G27915T","C28253A","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","A690V","G1819S","A3143V","L3201F","T4175I"],"ORF1b":["D54N","G662S","S959P"],"ORF8":["G8*","F120L"],"ORF9b":["I5T"],"S":["Q52H","V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q","I1114T"]},"labels":{"aa":"E: T11A; ORF1a: K47R, A690V, G1819S, A3143V, L3201F, T4175I; ORF1b: D54N, G662S, S959P; ORF8: G8*, F120L; ORF9b: I5T; S: Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, I1114T","spike_mutations":"Q52H, V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, I1114T"}}},{"name":"XDM","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XDM"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-1.1446900000000002"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"XDM"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":17.361111},"placement_prior":{"value":-10}},"branch_attrs":{"mutations":{"nuc":["C44T","A405G","A1269G","T8908C","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11750T","C11956T","T12730A","A13693G","A14856G","G15451A","C15738T","T15939C","T16342C","T17859C","G18703T","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","A22101T","A22106C","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","C22986T","A22995T","T23018C","T23019C","T23031C","G23040A","G23222A","C24034T","T24046C","C25416T","A26275G","C27059T","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28471T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","D335G","L3201F","L3829F"],"ORF1b":["T76A","G662S","S959P","D1746Y"],"ORF8":["G8*"],"ORF9b":["I5T","S63F"],"S":["V83A","Y144-","H146Q","E180V","K182Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","A475V","K478I","F486P","F490S","R493Q","E554K"]},"labels":{"aa":"E: T11A; ORF1a: K47R, D335G, L3201F, L3829F; ORF1b: T76A, G662S, S959P, D1746Y; ORF8: G8*; ORF9b: I5T, S63F; S: V83A, Y144-, H146Q, E180V, K182Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, A475V, K478I, F486P, F490S, R493Q, E554K","spike_mutations":"V83A, Y144-, H146Q, E180V, K182Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, A475V, K478I, F486P, F490S, R493Q, E554K"}}},{"name":"XE","node_attrs":{"div":15,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XE"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-16"},"Nextclade_pango":{"value":"XE"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":48},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.684278764568056}},"branch_attrs":{"mutations":{"nuc":["G670T","T2790C","A2832G","C3241T","A4184G","T4321C","T5386G","G5924A","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C14599T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","V1887I","S2083-","L2084I","A2710T","F3027L","I3090T"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, V1887I, S2083-, L2084I, A2710T, F3027L, I3090T"}}},{"name":"XG","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":9},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XG"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"XG"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.518140442458738}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","T2790C","A2832G","A4184G","T4321C","T5386G","C5672T","G5924A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A19855G","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","C22792T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"ORF1a":["R135S","I842T","K856R","S1307G","P1803S","V1887I","L3201F"],"ORF1b":["I2130V"],"S":["-24L","-25P","-26P","S27A"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, P1803S, V1887I, L3201F; ORF1b: I2130V; S: -24L, -25P, -26P, S27A","spike_mutations":"-24L, -25P, -26P, S27A"}}},{"name":"XH","node_attrs":{"div":18,"totalAminoacidDeletions":{"value":10},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XH"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"XH"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.792134813544167}},"branch_attrs":{"mutations":{"nuc":["G670T","T902C","C904A","G1244A","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","C22792T","C25624T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28435T","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"ORF1a":["R135S","C213R","G327S","I842T","K856R","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T"],"ORF3a":["H78Y"],"ORF9b":["P51L"],"S":["-24L","-25P","-26P","S27A"]},"labels":{"aa":"ORF1a: R135S, C213R, G327S, I842T, K856R, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T; ORF3a: H78Y; ORF9b: P51L; S: -24L, -25P, -26P, S27A","spike_mutations":"-24L, -25P, -26P, S27A"}}},{"name":"XJ","node_attrs":{"div":20,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XJ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"XJ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.724109650469889}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","T2790C","A2832G","C3241T","A4184G","T4321C","T5386G","G5924A","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","G11287-","T11288-","T11289-","T11291G","T11292G","A11537G","T12880C","T13195C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C22792T","C27945T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","V1887I","S2083-","L2084I","A2710T","F3027L","I3090T","L3674-","-3675F","-3676G","-3677F","I3758V"],"ORF8":["Q18*"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, V1887I, S2083-, L2084I, A2710T, F3027L, I3090T, L3674-, -3675F, -3676G, -3677F, I3758V; ORF8: Q18*"}}},{"name":"XK","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XK"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-3.62446"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"XK"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":45},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.534174293880537}},"branch_attrs":{"mutations":{"nuc":["G670T","T2790C","A2832G","A4184G","T4321C","C5147T","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11285-","T11286-","G11287-","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","A11537G","T12880C","T13195C","C15240T","T15714C","A16064G","T17410C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G22200T","C22792T","G23055A","T23063A","C23075T","A23767G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","R1628C","S2083-","L2084I","A2710T","F3027L","I3090T","L3674-","-3677F","I3758V"],"ORF1b":["Q866R","C1315R"],"S":["G213V","R498Q","Y501N","H505Y"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, R1628C, S2083-, L2084I, A2710T, F3027L, I3090T, L3674-, -3677F, I3758V; ORF1b: Q866R, C1315R; S: G213V, R498Q, Y501N, H505Y","spike_mutations":"G213V, R498Q, Y501N, H505Y"}}},{"name":"XL","node_attrs":{"div":11,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XL"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-25"},"Nextclade_pango":{"value":"XL"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":51},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.886550036498822}},"branch_attrs":{"mutations":{"nuc":["G670T","C875T","T2790C","A2832G","C3241T","A4184G","T4321C","T5386G","G5924A","G6513-","T6514-","T6515-","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G14229A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","L204F","I842T","K856R","S1307G","V1887I","S2083-","L2084I","L3201F"]},"labels":{"aa":"ORF1a: R135S, L204F, I842T, K856R, S1307G, V1887I, S2083-, L2084I, L3201F"}}},{"name":"XM","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XM"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-03-31"},"Nextclade_pango":{"value":"XM"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":46},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.144720681233167}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","C2470T","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11285-","T11286-","G11287-","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","A11537G","T12880C","T13195C","C15240T","T15714C","T17410C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G26577C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["E19Q"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T","L3674-","-3677F","I3758V"],"ORF1b":["C1315R"]},"labels":{"aa":"M: E19Q; ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T, L3674-, -3677F, I3758V; ORF1b: C1315R"}}},{"name":"XN","node_attrs":{"div":6,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XN"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-01"},"Nextclade_pango":{"value":"XN"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.382874257037807}},"branch_attrs":{"mutations":{"nuc":["G670T","T2790C","A2832G","C9866T","G10986A","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C22792T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","L3201F","R3574K"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, L3201F, R3574K"}}},{"name":"XP","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"0.358730338846468"},"partiallyAliased":{"value":"XP"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.023200000000000068"},"designation_date":{"value":"2022-04-01"},"Nextclade_pango":{"value":"XP"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"frameShifts":{"value":"ORF8:122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.9812918632709486}},"branch_attrs":{"mutations":{"nuc":["G670T","C2470T","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11285-","T11286-","G11287-","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","A11537G","T12880C","T13195C","C15240T","T15714C","T17410C","T19955C","G20055A","T21618C","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","C21762T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","C21846T","A21987-","T21988-","G21989-","T21990-","T21991-","T21992-","A21993-","T21994-","T21995-","A22194-","T22195-","T22196-","G22200T","G22599A","T22673C","G22688A","A22775G","C22786A","G22898A","G23048A","C23202A","C24130A","A24190C","C24503T","T26060C","A26530G","T26858C","C26880A","C27382G","T27383A","C27384T","A28254-","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3G","L120I"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T","L3674-","-3677F","I3758V"],"ORF1b":["C1315R","I2163T"],"ORF3a":["I223T"],"ORF6":["L61D"],"ORF8":["I121-"],"S":["I19T","-24L","-25P","-26P","S27A","A67V","H69-","V70-","T95I","D142-","V143-","Y144-","Y145D","N211-","L212I","G213V","R346K","F371L","A376T","N405D","S408R","G446S","G496S","T547K","N856K","L981F"]},"labels":{"aa":"M: D3G, L120I; ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T, L3674-, -3677F, I3758V; ORF1b: C1315R, I2163T; ORF3a: I223T; ORF6: L61D; ORF8: I121-; S: I19T, -24L, -25P, -26P, S27A, A67V, H69-, V70-, T95I, D142-, V143-, Y144-, Y145D, N211-, L212I, G213V, R346K, F371L, A376T, N405D, S408R, G446S, G496S, T547K, N856K, L981F","spike_mutations":"I19T, -24L, -25P, -26P, S27A, A67V, H69-, V70-, T95I, D142-, V143-, Y144-, Y145D, N211-, L212I, G213V, R346K, F371L, A376T, N405D, S408R, G446S, G496S, T547K, N856K, L981F"}}},{"name":"XQ","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XQ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-01"},"Nextclade_pango":{"value":"XQ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.427871874191209}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","C2470T","T2790C","A2832G","A4184G","T4321C","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A17615G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","L3201F"],"ORF1b":["K1383R"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, L3201F; ORF1b: K1383R"}}},{"name":"XR","node_attrs":{"div":12,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XR"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-01"},"Nextclade_pango":{"value":"XR"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.944711532386473}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","C2470T","T2790C","A2832G","A4184G","T4321C","C4893T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G13295A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A25524G","C27131T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","T1543I","L3201F","D4344N"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, T1543I, L3201F, D4344N"}}},{"name":"XT","node_attrs":{"div":8,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XT"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-14"},"Nextclade_pango":{"value":"XT"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.967002850636895}},"branch_attrs":{"mutations":{"nuc":["T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C13994T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","G21786T","A26530G","T26858C","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["D3G"],"N":["R413S"],"ORF1b":["A176V"],"ORF6":["L61D"],"S":["G75V"]},"labels":{"aa":"M: D3G; N: R413S; ORF1b: A176V; ORF6: L61D; S: G75V","spike_mutations":"G75V"}}},{"name":"XU","node_attrs":{"div":10,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XU"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-04-19"},"Nextclade_pango":{"value":"XU"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.921103680661037}},"branch_attrs":{"mutations":{"nuc":["G670T","T2790C","A2832G","A4184G","T4321C","T5386G","G5924A","G6513-","T6514-","T6515-","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C16887T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C25416T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","V1887I","S2083-","L2084I","L3201F"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, V1887I, S2083-, L2084I, L3201F"}}},{"name":"XV","node_attrs":{"div":17,"totalAminoacidDeletions":{"value":10},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XV"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-11"},"Nextclade_pango":{"value":"XV"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":47},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.51434428644477}},"branch_attrs":{"mutations":{"nuc":["G670T","T2790C","A2832G","C3583T","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11285-","T11286-","G11287-","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","A11537G","T12880C","T13195C","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","C22792T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T","L3674-","-3677F","I3758V"],"S":["-24L","-25P","-26P","S27A"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T, L3674-, -3677F, I3758V; S: -24L, -25P, -26P, S27A","spike_mutations":"-24L, -25P, -26P, S27A"}}},{"name":"XW","node_attrs":{"div":7,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XW"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-12"},"Nextclade_pango":{"value":"XW"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9237265352530235}},"branch_attrs":{"mutations":{"nuc":["G670T","C2470T","T2790C","A2832G","C10507T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12756T","G16020T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","T4164I"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, T4164I"}}},{"name":"XY","node_attrs":{"div":21,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XY"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-05-18"},"Nextclade_pango":{"value":"XY"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":49},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.981922588757469}},"branch_attrs":{"mutations":{"nuc":["C21T","G670T","A1585G","C2470T","T2790C","A2832G","A4184G","T4321C","T5386G","G6513-","T6514-","T6515-","G8393A","T9344C","G9424A","T9534C","T10198C","A10447G","T11049C","T11285-","T11286-","G11287-","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","A11537G","C12085T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22351G","C22792T","C26058T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"ORF1a":["R135S","I842T","K856R","S1307G","S2083-","L2084I","A2710T","F3027L","I3090T","V3595A","L3674-","-3677F","I3758V"]},"labels":{"aa":"ORF1a: R135S, I842T, K856R, S1307G, S2083-, L2084I, A2710T, F3027L, I3090T, V3595A, L3674-, -3677F, I3758V"}}},{"name":"XZ","node_attrs":{"div":9,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"-0.00008999595024645948"},"partiallyAliased":{"value":"XZ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0"},"designation_date":{"value":"2022-06-03"},"Nextclade_pango":{"value":"XZ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":50},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.176513744002037}},"branch_attrs":{"mutations":{"nuc":["C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G20398A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C22792T","A26530G","T26858C","C27382G","T27383A","C27384T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29742G","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"M":["D3G"],"N":["R413S"],"ORF1a":["L3201F"],"ORF1b":["E2311K"],"ORF6":["L61D"]},"labels":{"aa":"M: D3G; N: R413S; ORF1a: L3201F; ORF1b: E2311K; ORF6: L61D"}}},{"name":"internal_XBK","node_attrs":{"div":25,"partiallyAliased":{"value":"XBK"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBK"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.693083999330092}},"branch_attrs":{"mutations":{"nuc":["C1627T","C3796T","C3927T","C4586T","C5183T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","T12574C","G15451A","G18583A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["S1221L","P1640S","L3201F","N4060S"],"ORF1b":["G662S","V1706I"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: S1221L, P1640S, L3201F, N4060S; ORF1b: G662S, V1706I; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q"}},"children":[{"name":"XBK.1","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBK.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBK.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.28450846812023}},"branch_attrs":{"mutations":{"nuc":["C25046T"],"S":["P1162S"]},"labels":{"aa":"S: P1162S","spike_mutations":"P1162S"}}},{"name":"XBK","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBK"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2022-12-15"},"Nextclade_pango":{"value":"XBK"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.693083999330092}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_XCH","node_attrs":{"div":43,"partiallyAliased":{"value":"XCH"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XCH"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.7292667676104365}},"branch_attrs":{"mutations":{"nuc":["A405G","A1124G","C1973T","A2163C","C7564T","T8737C","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12467T","G15451A","C15738T","T15939C","T16342C","A16856G","T17124C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22624T","C22664A","G22895C","T22896C","G22898A","G22927T","T22928C","T22942G","T23018C","T23019C","T23031C","G23040A","C23673T","C25416T","G25947C","A26275G","C27741T","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28657T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","R287G","E633A","L3201F","A4068S"],"ORF1b":["G662S","S959P","D1130G"],"ORF3a":["Q185H"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","L455F","F456L","N460K","F486P","F490S","R493Q","S704L"]},"labels":{"aa":"E: T11A; ORF1a: K47R, R287G, E633A, L3201F, A4068S; ORF1b: G662S, S959P, D1130G; ORF3a: Q185H; ORF8: G8*; ORF9b: I5T; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, S704L","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, L455F, F456L, N460K, F486P, F490S, R493Q, S704L"}},"children":[{"name":"XCH.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XCH.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"XCH.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.005584612934758}},"branch_attrs":{"mutations":{"nuc":["G9220A","T9952C","C23280T","C26907T"],"S":["T573I"]},"labels":{"aa":"S: T573I","spike_mutations":"T573I"}}},{"name":"XCH","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XCH"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"XCH"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7292667676104365}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_XCT","node_attrs":{"div":45,"partiallyAliased":{"value":"XCT"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XCT"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.68538825400919}},"branch_attrs":{"mutations":{"nuc":["A405G","C1684T","C1889T","C2334T","G5720A","C7051T","C9693T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C12789T","G15451A","C15738T","T15939C","T16342C","A16878T","T17859C","A18492G","A19886G","C20320T","A20741G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22115G","A22190G","G22577C","G22599C","A22893C","G22898A","T22917G","G22927T","T22928C","T22942G","T23019C","G23040A","T24073C","C24134A","T24991A","C25416T","G25606A","C25721T","T25959C","A26275G","A27507C","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734G","T29735A","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758A","T29759G"],"E":["T11A"],"ORF1a":["K47R","R542C","A690V","G1819S","A3143V","L3201F","T4175I"],"ORF1b":["G662S","S959P","K2140R","H2285Y","Q2425R"],"ORF3a":["A72T","A110V"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["K147E","W152R","F157L","N185D","I210V","D339H","R346T","K444T","G446S","L452R","L455F","F456L","N460K","F486S","R493Q","L858I"]},"labels":{"aa":"E: T11A; ORF1a: K47R, R542C, A690V, G1819S, A3143V, L3201F, T4175I; ORF1b: G662S, S959P, K2140R, H2285Y, Q2425R; ORF3a: A72T, A110V; ORF8: G8*; ORF9b: I5T; S: K147E, W152R, F157L, N185D, I210V, D339H, R346T, K444T, G446S, L452R, L455F, F456L, N460K, F486S, R493Q, L858I","spike_mutations":"K147E, W152R, F157L, N185D, I210V, D339H, R346T, K444T, G446S, L452R, L455F, F456L, N460K, F486S, R493Q, L858I"}},"children":[{"name":"XCT.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"XCT.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-11-12"},"Nextclade_pango":{"value":"XCT.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":81},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.788287397701684}},"branch_attrs":{"mutations":{"nuc":["G22331A","C23673T","G29734-","A29735-","A29758-","G29759-"],"S":["G257S","S704L"]},"labels":{"aa":"S: G257S, S704L","spike_mutations":"G257S, S704L"}}},{"name":"XCT","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"1.0465353593059472"},"partiallyAliased":{"value":"XCT"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"-1.05117"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XCT"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.68538825400919}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_XDA","node_attrs":{"div":44,"partiallyAliased":{"value":"XDA"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XDA"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.434283019287809}},"branch_attrs":{"mutations":{"nuc":["C44T","A405G","A1269G","T8908C","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","C11750T","C11956T","T12730A","A13693G","A14856G","G15451A","C15738T","T15939C","T16342C","T17859C","G18703T","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","A22101T","A22106C","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22928C","T22942G","A22995G","T23018C","T23019C","T23031C","G23040A","G23222A","C23664T","C25416T","A26275G","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C28471T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","D335G","L3201F","L3829F"],"ORF1b":["T76A","G662S","S959P","D1746Y"],"ORF8":["G8*"],"ORF9b":["I5T","S63F"],"S":["V83A","Y144-","H146Q","E180V","K182Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","F456L","N460K","K478R","F486P","F490S","R493Q","E554K","A701V"]},"labels":{"aa":"E: T11A; ORF1a: K47R, D335G, L3201F, L3829F; ORF1b: T76A, G662S, S959P, D1746Y; ORF8: G8*; ORF9b: I5T, S63F; S: V83A, Y144-, H146Q, E180V, K182Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, K478R, F486P, F490S, R493Q, E554K, A701V","spike_mutations":"V83A, Y144-, H146Q, E180V, K182Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, K478R, F486P, F490S, R493Q, E554K, A701V"}},"children":[{"name":"XDA.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XDA.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XDA.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606739993688397}},"branch_attrs":{"mutations":{"nuc":["T17664C","C22088T","G27952A"],"ORF8":["C20Y"],"S":["L176F"]},"labels":{"aa":"ORF8: C20Y; S: L176F","spike_mutations":"L176F"}}},{"name":"XDA","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XDA"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-10-18"},"Nextclade_pango":{"value":"XDA"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.434283019287809}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_XCF","node_attrs":{"div":31,"partiallyAliased":{"value":"XCF"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XCF"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.606128807572153}},"branch_attrs":{"mutations":{"nuc":["A405G","G4006A","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T16342C","T17067C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22928C","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","T26012G","A26275G","G27915T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","L3201F"],"ORF1b":["G662S","S959P"],"ORF3a":["F207C"],"ORF8":["G8*"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","F456L","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, L3201F; ORF1b: G662S, S959P; ORF3a: F207C; ORF8: G8*; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, F456L, N460K, F486P, F490S, R493Q"}},"children":[{"name":"XCF","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XCF"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XCF"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606128807572153}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000368","node_attrs":{"div":31,"partiallyAliased":{"value":"XCF"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XCF"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.606128807572153}},"branch_attrs":{"mutations":{}},"children":[{"name":"XCF.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XCF.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"XCF.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.198267446675187}},"branch_attrs":{"mutations":{"nuc":["T2C","C44T","C22033A","C27881T","C29632T"],"S":["F157L"]},"labels":{"aa":"S: F157L","spike_mutations":"F157L"}}},{"name":"NODE_0000369","node_attrs":{"div":32,"partiallyAliased":{"value":"XCF"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XCF"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.828393055679275}},"branch_attrs":{"mutations":{"nuc":["C19263T"]}},"children":[{"name":"XCF.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XCF.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"XCF.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["T18357G","G24348T"],"S":["S929I"]},"labels":{"aa":"S: S929I","spike_mutations":"S929I"}}},{"name":"XCF.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XCF.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XCF.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["G21795T","C22522T"],"S":["R78M"]},"labels":{"aa":"S: R78M","spike_mutations":"R78M"}}}]}]}]},{"name":"internal_XDD","node_attrs":{"div":55,"partiallyAliased":{"value":"XDD"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XDD"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.141853195385745}},"branch_attrs":{"mutations":{"nuc":["A405G","C2334T","G5720A","C6541T","A7842G","C8293T","G8393A","G11042T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G11727A","C12789T","C12815T","T13339C","T15756A","A18492G","C18894T","C21622T","G21624C","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","C21711T","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-","G21941T","T21992-","A21993-","T21994-","T22032C","C22033A","A22034G","A22194-","T22195-","T22196-","C22208T","C22295A","C22353A","A22556G","G22577C","A22629C","G22770A","G22895C","T22896A","G22898A","A22910G","C22916T","T22917G","T22926C","T22942A","T23005A","G23009-","T23010-","T23011-","G23012A","C23013A","T23018C","T23019C","G23040A","G23222A","C23271T","C23423T","A23604G","C24378T","C24990T","C25207T","A26275G","A27507C","G27915T","T28297C","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","C29625T","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","A690V","G1819S","N2526S","A2710T","V3593F","R3821K","T4175I"],"ORF8":["G8*"],"ORF9b":["I5T"],"S":["R21T","S50L","H69-","V70-","V127F","Y144-","F157S","R158G","N211-","L212I","L216F","H245N","A264D","I332V","D339H","K356T","R403K","V445H","G446S","N450D","L452W","L455S","N460K","N481K","V483-","A484K","F486P","R493Q","E554K","A570V","P621S","H681R","S939F","P1143L"]},"labels":{"aa":"E: T11A; ORF1a: K47R, A690V, G1819S, N2526S, A2710T, V3593F, R3821K, T4175I; ORF8: G8*; ORF9b: I5T; S: R21T, S50L, H69-, V70-, V127F, Y144-, F157S, R158G, N211-, L212I, L216F, H245N, A264D, I332V, D339H, K356T, R403K, V445H, G446S, N450D, L452W, L455S, N460K, N481K, V483-, A484K, F486P, R493Q, E554K, A570V, P621S, H681R, S939F, P1143L","spike_mutations":"R21T, S50L, H69-, V70-, V127F, Y144-, F157S, R158G, N211-, L212I, L216F, H245N, A264D, I332V, D339H, K356T, R403K, V445H, G446S, N450D, L452W, L455S, N460K, N481K, V483-, A484K, F486P, R493Q, E554K, A570V, P621S, H681R, S939F, P1143L"}},"children":[{"name":"XDD","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"XDD"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"XDD"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":84},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.141853195385745}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000371","node_attrs":{"div":55,"partiallyAliased":{"value":"XDD"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XDD"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.141853195385745}},"branch_attrs":{"mutations":{}},"children":[{"name":"XDD.2","node_attrs":{"div":57,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"XDD.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"XDD.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["C44T","C22482T"],"S":["T307I"]},"labels":{"aa":"S: T307I","spike_mutations":"T307I"}}},{"name":"NODE_0000372","node_attrs":{"div":56,"partiallyAliased":{"value":"XDD.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XDD.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.50982998068034}},"branch_attrs":{"mutations":{"nuc":["C23673T"],"S":["S704L"]},"labels":{"aa":"S: S704L","spike_mutations":"S704L"}},"children":[{"name":"XDD.1","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"XDD.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"XDD.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":85},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.50982998068034}},"branch_attrs":{"mutations":{}}},{"name":"XDD.1.1","node_attrs":{"div":58,"totalAminoacidDeletions":{"value":17},"immune_escape":{"value":"1.270220553236185"},"partiallyAliased":{"value":"XDD.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.03082"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"XDD.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":86},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907769989352378}},"branch_attrs":{"mutations":{"nuc":["C44T","A23312G"],"S":["I584V"]},"labels":{"aa":"S: I584V","spike_mutations":"I584V"}}}]}]}]},{"name":"internal_XBL","node_attrs":{"div":34,"partiallyAliased":{"value":"XBL"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBL"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.160876432699176}},"branch_attrs":{"mutations":{"nuc":["A405G","G3446A","C3796T","C3927T","C4586T","C5183T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T16342C","T17859C","A19326G","A20379G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22317T","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","G27915T","C28312T","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K47R","A1061T","S1221L","P1640S","L3201F"],"ORF1b":["G662S","S959P"],"ORF8":["G8*"],"ORF9b":["S10F"],"S":["V83A","Y144-","H146Q","Q183E","G213E","G252V","D339H","R346T","L368I","V445P","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, A1061T, S1221L, P1640S, L3201F; ORF1b: G662S, S959P; ORF8: G8*; ORF9b: S10F; S: V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, G252V, D339H, R346T, L368I, V445P, G446S, N460K, F486P, F490S, R493Q"}},"children":[{"name":"XBL","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBL"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XBL"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.160876432699176}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000374","node_attrs":{"div":34,"partiallyAliased":{"value":"XBL"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBL"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.160876432699176}},"branch_attrs":{"mutations":{}},"children":[{"name":"XBL.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBL.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-19"},"Nextclade_pango":{"value":"XBL.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094856632709521}},"branch_attrs":{"mutations":{"nuc":["T2461C","A12850G","G23465A"],"S":["V635I"]},"labels":{"aa":"S: V635I","spike_mutations":"V635I"}}},{"name":"XBL.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBL.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-19"},"Nextclade_pango":{"value":"XBL.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.953527479913053}},"branch_attrs":{"mutations":{"nuc":["A1393G"]}}},{"name":"NODE_0000375","node_attrs":{"div":36,"partiallyAliased":{"value":"XBL.3"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBL.3"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.982629861617359}},"branch_attrs":{"mutations":{"nuc":["C11824T","G14400T"]}},"children":[{"name":"XBL.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBL.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-19"},"Nextclade_pango":{"value":"XBL.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.982629861617359}},"branch_attrs":{"mutations":{}}},{"name":"XBL.3.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBL.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBL.3.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.238763208393801}},"branch_attrs":{"mutations":{"nuc":["C10252T","C17766T","A23738G","G29702A"],"S":["I726V"]},"labels":{"aa":"S: I726V","spike_mutations":"I726V"}}}]}]}]},{"name":"internal_XBJ","node_attrs":{"div":36,"partiallyAliased":{"value":"XBJ"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBJ"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.726622188694191}},"branch_attrs":{"mutations":{"nuc":["C1471T","C2445T","G3072A","T5406C","A6770G","C6786T","C8016T","C8208T","C8991T","C9866T","C10189T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12030G","C17678T","C18252T","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T22020C","T22054G","C22295A","G22332A","A22893G","A22910G","C22916A","T22942G","G23012A","C23013G","G23040A","C25896T","G26529A","T26858C","C27012T","C27259A","C27382G","T27383A","C27384T","C27513T","C27889T","A28330G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"M":["D3N"],"ORF1a":["T727I","C936Y","I1714T","M2169V","T2174I","A2584V","T2648I","A2909V","L3201F","Q3922R"],"ORF1b":["T1404M"],"ORF6":["L61D"],"ORF9b":["D16G"],"S":["M153T","N164K","H245N","G257D","K444R","N450D","L452M","N460K","A484R","R493Q"]},"labels":{"aa":"M: D3N; ORF1a: T727I, C936Y, I1714T, M2169V, T2174I, A2584V, T2648I, A2909V, L3201F, Q3922R; ORF1b: T1404M; ORF6: L61D; ORF9b: D16G; S: M153T, N164K, H245N, G257D, K444R, N450D, L452M, N460K, A484R, R493Q","spike_mutations":"M153T, N164K, H245N, G257D, K444R, N450D, L452M, N460K, A484R, R493Q"}},"children":[{"name":"XBJ","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"XBJ"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2022-12-01"},"Nextclade_pango":{"value":"XBJ"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.726622188694191}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000377","node_attrs":{"div":36,"partiallyAliased":{"value":"XBJ"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBJ"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.726622188694191}},"branch_attrs":{"mutations":{}},"children":[{"name":"XBJ.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"XBJ.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBJ.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.113567843210216}},"branch_attrs":{"mutations":{"nuc":["C22006T","C25075T"]}}},{"name":"XBJ.3","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"XBJ.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBJ.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606544588486038}},"branch_attrs":{"mutations":{"nuc":["G9049C","C13423T"],"ORF1a":["K2928N"]},"labels":{"aa":"ORF1a: K2928N"}}},{"name":"XBJ.4","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6561529593771388"},"partiallyAliased":{"value":"XBJ.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.29833"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBJ.4"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.399119078505277}},"branch_attrs":{"mutations":{"nuc":["G23016A"],"S":["G485D"]},"labels":{"aa":"S: G485D","spike_mutations":"G485D"}}},{"name":"internal_63f4","node_attrs":{"div":37,"partiallyAliased":{"value":"XBJ.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBJ.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.5082691952986815}},"branch_attrs":{"mutations":{"nuc":["A16011G"]}},"children":[{"name":"XBJ.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.592503786408845"},"partiallyAliased":{"value":"XBJ.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.06344"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBJ.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.5082691952986815}},"branch_attrs":{"mutations":{}}},{"name":"XBJ.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.6561529593771388"},"partiallyAliased":{"value":"XBJ.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.29833"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBJ.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167336233247928}},"branch_attrs":{"mutations":{"nuc":["A253G","C21682T","G23016A","T24349C","C25452T","C27741T","C27847T","G28857A"],"N":["R195K"],"ORF7b":["S31L"],"S":["G485D"]},"labels":{"aa":"N: R195K; ORF7b: S31L; S: G485D","spike_mutations":"G485D"}}}]}]}]},{"name":"internal_XBF","node_attrs":{"div":24,"partiallyAliased":{"value":"XBF"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBF"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-3.703236749074045}},"branch_attrs":{"mutations":{"nuc":["G625T","C1627T","T3339C","C6070T","C8692T","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","A12444G","G15451A","G18583A","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","A22001G","T22016C","C22033A","A22190G","G22331A","G22577C","G22599C","G22898A","T22942G","T23018C","T23019C","T23031C","G23040A","C25416T","A26275G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-"],"E":["T11A"],"ORF1a":["K120N","V1025A","L3201F","N4060S"],"ORF1b":["G662S","V1706I"],"S":["K147E","W152R","F157L","I210V","G257S","D339H","R346T","G446S","N460K","F486P","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K120N, V1025A, L3201F, N4060S; ORF1b: G662S, V1706I; S: K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q","spike_mutations":"K147E, W152R, F157L, I210V, G257S, D339H, R346T, G446S, N460K, F486P, F490S, R493Q"}},"children":[{"name":"XBF","node_attrs":{"div":24,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"XBF"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.703236749074045}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000380","node_attrs":{"div":24,"partiallyAliased":{"value":"XBF"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBF"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-3.703236749074045}},"branch_attrs":{"mutations":{}},"children":[{"name":"XBF.10","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-04-08"},"Nextclade_pango":{"value":"XBF.10"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.185846504051033}},"branch_attrs":{"mutations":{"nuc":["G22021T","G29868T"],"S":["M153I"]},"labels":{"aa":"S: M153I","spike_mutations":"M153I"}}},{"name":"XBF.2","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XBF.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.448998174511458}},"branch_attrs":{"mutations":{"nuc":["T28078C"],"ORF8":["V62A"]},"labels":{"aa":"ORF8: V62A"}}},{"name":"XBF.3","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XBF.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.421693891979788}},"branch_attrs":{"mutations":{"nuc":["G1085A","T3067C"],"ORF1a":["V274I"]},"labels":{"aa":"ORF1a: V274I"}}},{"name":"XBF.4","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBF.4"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.94870299442312}},"branch_attrs":{"mutations":{"nuc":["C1514T","C4252T"],"ORF1a":["H417Y"]},"labels":{"aa":"ORF1a: H417Y"}}},{"name":"XBF.5","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBF.5"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3732082898905755}},"branch_attrs":{"mutations":{"nuc":["C2455T"]}}},{"name":"XBF.6","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBF.6"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.705903230245965}},"branch_attrs":{"mutations":{"nuc":["T12222C"],"ORF1a":["V3986A"]},"labels":{"aa":"ORF1a: V3986A"}}},{"name":"XBF.9","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBF.9"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129579908937692}},"branch_attrs":{"mutations":{"nuc":["C4586T","A16474G","T29035G"],"ORF1b":["S1003G"]},"labels":{"aa":"ORF1b: S1003G"}}},{"name":"NODE_0000381","node_attrs":{"div":25,"partiallyAliased":{"value":"XBF.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBF.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.4611753839497945}},"branch_attrs":{"mutations":{"nuc":["C24378T"],"S":["S939F"]},"labels":{"aa":"S: S939F","spike_mutations":"S939F"}},"children":[{"name":"XBF.1","node_attrs":{"div":25,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XBF.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.4611753839497945}},"branch_attrs":{"mutations":{}}},{"name":"XBF.1.1","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-04-08"},"Nextclade_pango":{"value":"XBF.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509736794437754}},"branch_attrs":{"mutations":{"nuc":["G3728T","C23423T","A23989G"],"ORF1a":["G1155C"],"S":["P621S"]},"labels":{"aa":"ORF1a: G1155C; S: P621S","spike_mutations":"P621S"}}}]},{"name":"NODE_0000382","node_attrs":{"div":27,"partiallyAliased":{"value":"XBF.7"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBF.7"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.100021551338401}},"branch_attrs":{"mutations":{"nuc":["A1C","T625G","C29409T"],"N":["T379I"],"ORF1a":["N120K"]},"labels":{"aa":"N: T379I; ORF1a: N120K"}},"children":[{"name":"XBF.7","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBF.7"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.100021551338401}},"branch_attrs":{"mutations":{}}},{"name":"XBF.7.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBF.7.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208799985016358}},"branch_attrs":{"mutations":{"nuc":["C19099G","C22530T","T27546C","G29527A"],"ORF1b":["Q1878E"],"S":["T323I"]},"labels":{"aa":"ORF1b: Q1878E; S: T323I","spike_mutations":"T323I"}}}]},{"name":"NODE_0000383","node_attrs":{"div":26,"partiallyAliased":{"value":"XBF.8"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBF.8"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.5760654374488}},"branch_attrs":{"mutations":{"nuc":["T9931C","C12970T"]}},"children":[{"name":"XBF.8","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBF.8"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5760654374488}},"branch_attrs":{"mutations":{}}},{"name":"XBF.8.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.8366421653363688"},"partiallyAliased":{"value":"XBF.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"1.04277"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBF.8.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731523430998813}},"branch_attrs":{"mutations":{"nuc":["A686-","A687-","G688-","T689-","C690-","A691-","T692-","T693-","T694-","T3442C","C13255T","C22000T","C23423T","T25039C"],"ORF1a":["K141-","S142-","F143-"],"S":["P621S"]},"labels":{"aa":"ORF1a: K141-, S142-, F143-; S: P621S","spike_mutations":"P621S"}}}]}]}]},{"name":"internal_XAY","node_attrs":{"div":53,"partiallyAliased":{"value":"XAY"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.588872114915699}},"branch_attrs":{"mutations":{"nuc":["C4456T","C5869T","C7124T","C8595T","C8986T","G9053T","T9344C","G9424A","T9534C","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G12163A","C12747T","C15026T","G15451A","T15714C","C16466T","T17410C","G18163A","C19220T","T19955C","G20055A","C21614T","T21618G","A21623G","T21634A","T21635C","T21636C","T21637C","T21638C","T21639C","T21641G","C21846T","G22017T","A22029-","G22030-","T22031-","T22032-","C22033-","A22034-","T22118C","G22899A","C22916A","T22917G","T23018C","T23019C","G23040A","C23423T","C23679T","C24912T","T25000C","C25413T","C25469T","T25584C","T26060C","T26270C","G26577C","C26681T","A26709G","T26767C","T26858C","G26959A","C27259A","C27382G","T27383A","C27384T","C27575G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759-","G29779T"],"E":["I9T"],"M":["E19Q","T63A","I82T","R146H"],"ORF1a":["P2287S","T2777I","V2930L","F3027L","I3090T","T4161I"],"ORF1b":["A520V","G662S","P1000L","C1315R","V1566I","A1918V","I2163T"],"ORF3a":["S26L","I223T"],"ORF6":["L61D"],"ORF7a":["T61S"],"S":["L18F","I19R","R21G","-24L","-25P","-26P","S27A","T95I","W152L","E156-","F157-","R158G","F186L","G446D","L452R","F486P","R493Q","P621S","A706V","T1117I"]},"labels":{"aa":"E: I9T; M: E19Q, T63A, I82T, R146H; ORF1a: P2287S, T2777I, V2930L, F3027L, I3090T, T4161I; ORF1b: A520V, G662S, P1000L, C1315R, V1566I, A1918V, I2163T; ORF3a: S26L, I223T; ORF6: L61D; ORF7a: T61S; S: L18F, I19R, R21G, -24L, -25P, -26P, S27A, T95I, W152L, E156-, F157-, R158G, F186L, G446D, L452R, F486P, R493Q, P621S, A706V, T1117I","spike_mutations":"L18F, I19R, R21G, -24L, -25P, -26P, S27A, T95I, W152L, E156-, F157-, R158G, F186L, G446D, L452R, F486P, R493Q, P621S, A706V, T1117I"}},"children":[{"name":"XAY","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2022-08-25"},"Nextclade_pango":{"value":"XAY"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":61},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.588872114915699}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000385","node_attrs":{"div":53,"partiallyAliased":{"value":"XAY"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.588872114915699}},"branch_attrs":{"mutations":{}},"children":[{"name":"XAY.3","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XAY.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.424648841315577}},"branch_attrs":{"mutations":{"nuc":["C1288T","G19072T"],"ORF1b":["D1869Y"]},"labels":{"aa":"ORF1b: D1869Y"}}},{"name":"NODE_0000386","node_attrs":{"div":56,"partiallyAliased":{"value":"XAY.2"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.2"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.442783820922822}},"branch_attrs":{"mutations":{"nuc":["A2410G","A11559G","C15081T"],"ORF1a":["Y3765C"]},"labels":{"aa":"ORF1a: Y3765C"}},"children":[{"name":"XAY.2","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"XAY.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":62},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.442783820922822}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000387","node_attrs":{"div":57,"partiallyAliased":{"value":"XAY.2"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.2"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.874678781004656}},"branch_attrs":{"mutations":{"nuc":["T9642C"],"ORF1a":["I3126T"]},"labels":{"aa":"ORF1a: I3126T"}},"children":[{"name":"XAY.2.3","node_attrs":{"div":58,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XAY.2.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.002420317560945}},"branch_attrs":{"mutations":{"nuc":["C657T"],"ORF1a":["A131V"]},"labels":{"aa":"ORF1a: A131V"}}},{"name":"NODE_0000388","node_attrs":{"div":58,"partiallyAliased":{"value":"XAY.2"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.2"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.14496142601518}},"branch_attrs":{"mutations":{"nuc":["T24721C"]}},"children":[{"name":"XAY.2.1","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XAY.2.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.002420317560945}},"branch_attrs":{"mutations":{"nuc":["A28343G"],"N":["T24A"]},"labels":{"aa":"N: T24A"}}},{"name":"XAY.2.2","node_attrs":{"div":60,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XAY.2.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.12660843112811}},"branch_attrs":{"mutations":{"nuc":["C635T","A1605G"],"ORF1a":["R124C","N447S"]},"labels":{"aa":"ORF1a: R124C, N447S"}}}]}]}]},{"name":"NODE_0000389","node_attrs":{"div":60,"partiallyAliased":{"value":"XAY.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.412910692165031}},"branch_attrs":{"mutations":{"nuc":["A385G","G407A","A9419G","C10301A","G20679T","A22320G","C28720T"],"ORF1a":["D48N","I3052V","Q3346K"],"S":["D253G"]},"labels":{"aa":"ORF1a: D48N, I3052V, Q3346K; S: D253G","spike_mutations":"D253G"}},"children":[{"name":"XAY.1","node_attrs":{"div":60,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2022-10-13"},"Nextclade_pango":{"value":"XAY.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.412910692165031}},"branch_attrs":{"mutations":{}}},{"name":"XAY.1.2","node_attrs":{"div":62,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XAY.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6144499999999999"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XAY.1.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.33366143178336}},"branch_attrs":{"mutations":{"nuc":["C11202T","C28432T"],"ORF1a":["T3646I"],"ORF9b":["S50L"]},"labels":{"aa":"ORF1a: T3646I; ORF9b: S50L"}}},{"name":"NODE_0000390","node_attrs":{"div":62,"partiallyAliased":{"value":"XAY.1.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.1.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.635088297326908}},"branch_attrs":{"mutations":{"nuc":["G6589C","G22599C"],"ORF1a":["K2108N"],"S":["R346T"]},"labels":{"aa":"ORF1a: K2108N; S: R346T","spike_mutations":"R346T"}},"children":[{"name":"XAY.1.1","node_attrs":{"div":62,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XAY.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.72587"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"XAY.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.635088297326908}},"branch_attrs":{"mutations":{}}},{"name":"XAY.1.1.2","node_attrs":{"div":64,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XAY.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.72587"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XAY.1.1.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5678493110199305}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","C14838T","G27575C"],"ORF1a":["G82-","H83-","V84-","M85V"],"ORF7a":["S61T"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85V; ORF7a: S61T"}}},{"name":"NODE_0000391","node_attrs":{"div":63,"partiallyAliased":{"value":"XAY.1.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.1.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.89887382744644}},"branch_attrs":{"mutations":{"nuc":["C14599T"]}},"children":[{"name":"XAY.1.1.3","node_attrs":{"div":66,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XAY.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.72587"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XAY.1.1.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.50624961873394}},"branch_attrs":{"mutations":{"nuc":["C6040T","C8290T","T15153C"]}}},{"name":"NODE_0000392","node_attrs":{"div":64,"partiallyAliased":{"value":"XAY.1.1.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.1.1.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-7.5918959485254}},"branch_attrs":{"mutations":{"nuc":["G25019T"],"S":["D1153Y"]},"labels":{"aa":"S: D1153Y","spike_mutations":"D1153Y"}},"children":[{"name":"GL.3","node_attrs":{"div":66,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XAY.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.72587"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GL.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.81014153871556}},"branch_attrs":{"mutations":{"nuc":["C5183T","C8140T"],"ORF1a":["P1640S"]},"labels":{"aa":"ORF1a: P1640S"}}},{"name":"XAY.1.1.1","node_attrs":{"div":64,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XAY.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.72587"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XAY.1.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-7.5918959485254}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000393","node_attrs":{"div":65,"partiallyAliased":{"value":"XAY.1.1.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XAY.1.1.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.725727754179244}},"branch_attrs":{"mutations":{"nuc":["C25585T"],"ORF3a":["L65F"]},"labels":{"aa":"ORF3a: L65F"}},"children":[{"name":"GL.1","node_attrs":{"div":67,"totalAminoacidDeletions":{"value":12},"immune_escape":{"value":"0.8226113755169072"},"partiallyAliased":{"value":"XAY.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6888599999999999"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"GL.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.731079949769362}},"branch_attrs":{"mutations":{"nuc":["C19441T","T21992-","A21993-","T21994-","G22820A"],"S":["Y144-","D420N"]},"labels":{"aa":"S: Y144-, D420N","spike_mutations":"Y144-, D420N"}}},{"name":"GL.2","node_attrs":{"div":71,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XAY.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.72587"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GL.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-7.5918959485254}},"branch_attrs":{"mutations":{"nuc":["C44T","T2432C","C3511T","T4165C","A25431G","G28321T"],"ORF1a":["S723P"],"ORF9b":["R13L"]},"labels":{"aa":"ORF1a: S723P; ORF9b: R13L"}}}]}]}]}]}]}]}]},{"name":"internal_XBC","node_attrs":{"div":68,"partiallyAliased":{"value":"XBC"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.179011056050781}},"branch_attrs":{"mutations":{"nuc":["A4184G","T4321C","C4893T","C5184T","A5584G","C6196T","G6576T","G7091A","C9073T","T9344C","G9424A","T9534C","C9891T","T10029C","T10198C","A10447G","A10449C","T11289C","T11291G","T11292G","T11418C","C11514T","T12880C","C13019T","T15030C","C15237T","G15451A","T15714C","C16466T","C16616T","T17410C","G18163A","T19955C","G20055A","T21634A","T21636C","T21637C","T21638C","T21639C","T21641G","T21992-","A21993-","T21994-","A22029-","G22030-","T22031-","T22032-","C22033-","A22034-","C22188T","T22197C","G22200T","G22205C","C22227T","G22289-","C22290-","T22291-","T22292-","T22293-","A22294-","C22329T","A22578G","G22898A","T23018C","T23019C","G23040A","A23670T","T25584C","C25854T","T26060C","T26270C","G26577C","A26709G","T26767C","T26819C","T26858C","C27259A","C27382G","T27383A","C27384T","T27718C","C27752T","T27807C","G27890T","A27898C","G28248-","A28249-","T28250-","T28251-","T28252-","C28253-","T28271-","T28311C","T28362G","T28363A","T28364G","T28365A","T28366A","T28367C","T28368G","T28369C","T28370A","A28461G","A28881T","A28882G","C28883G","G29402T","C29510A","T29734G","T29735A","T29736G","T29737G","T29738C","T29739C","T29740A","T29741C","T29743C","T29744G","T29745G","T29746A","T29747G","T29749A","T29750C","T29751G","T29752A","T29754C","T29755G","T29756A","T29757G","T29759G"],"E":["I9T"],"M":["E19Q","T63A","I82T"],"N":["L13P","-31E","-32R","-33S","D63G","K203M","R204G","D377Y","R413S"],"ORF1a":["S1307G","T1543I","P1640L","S2104I","V2276I","F3027L","I3090T","A3209V","I3255T","H3395P","-3675S","-3676G","-3677F","V3718A","T3750I"],"ORF1b":["G662S","P1000L","T1050I","C1315R","V1566I","I2163T"],"ORF3a":["I223T"],"ORF6":["L61D"],"ORF7a":["F109L","T120I"],"ORF8":["K2T","D119-","F120-"],"ORF9b":["S10P","-27E","-28N","-29A","T60A"],"S":["-24L","-25S","-26P","S27A","Y144-","E156-","F157-","R158G","P209L","L212S","G213V","D215H","A222V","L242-","A243-","S256L","D339G","G446S","F486P","R493Q","N703I"]},"labels":{"aa":"E: I9T; M: E19Q, T63A, I82T; N: L13P, -31E, -32R, -33S, D63G, K203M, R204G, D377Y, R413S; ORF1a: S1307G, T1543I, P1640L, S2104I, V2276I, F3027L, I3090T, A3209V, I3255T, H3395P, -3675S, -3676G, -3677F, V3718A, T3750I; ORF1b: G662S, P1000L, T1050I, C1315R, V1566I, I2163T; ORF3a: I223T; ORF6: L61D; ORF7a: F109L, T120I; ORF8: K2T, D119-, F120-; ORF9b: S10P, -27E, -28N, -29A, T60A; S: -24L, -25S, -26P, S27A, Y144-, E156-, F157-, R158G, P209L, L212S, G213V, D215H, A222V, L242-, A243-, S256L, D339G, G446S, F486P, R493Q, N703I","spike_mutations":"-24L, -25S, -26P, S27A, Y144-, E156-, F157-, R158G, P209L, L212S, G213V, D215H, A222V, L242-, A243-, S256L, D339G, G446S, F486P, R493Q, N703I"}},"children":[{"name":"XBC","node_attrs":{"div":68,"totalAminoacidDeletions":{"value":7},"immune_escape":{"value":"0.3262976555887286"},"partiallyAliased":{"value":"XBC"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6871599999999999"},"designation_date":{"value":"2022-09-24"},"Nextclade_pango":{"value":"XBC"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":55},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.179011056050781}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000395","node_attrs":{"div":68,"partiallyAliased":{"value":"XBC"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.179011056050781}},"branch_attrs":{"mutations":{"nuc":["T27792-","T27793-"],"ORF7b":["F13-"]},"labels":{"aa":"ORF7b: F13-"}},"children":[{"name":"NODE_0000396","node_attrs":{"div":72,"partiallyAliased":{"value":"XBC.2"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.2"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-7.357549810154802}},"branch_attrs":{"mutations":{"nuc":["G8858A","T14034C","A21852G","A29188T"],"ORF1a":["V2865I"],"S":["K97R"]},"labels":{"aa":"ORF1a: V2865I; S: K97R","spike_mutations":"K97R"}},"children":[{"name":"XBC.2","node_attrs":{"div":73,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.3262976555887286"},"partiallyAliased":{"value":"XBC.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6871599999999999"},"designation_date":{"value":"2022-10-14"},"Nextclade_pango":{"value":"XBC.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":58},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.002757120034747}},"branch_attrs":{"mutations":{"nuc":["C1758T"],"ORF1a":["A498V"]},"labels":{"aa":"ORF1a: A498V"}}},{"name":"XBC.2.1","node_attrs":{"div":78,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.4525335598404524"},"partiallyAliased":{"value":"XBC.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.58838"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBC.2.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":60},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.892620166344349}},"branch_attrs":{"mutations":{"nuc":["C222T","C1627T","G4184A","C9541T","A22893C","G27936A"],"ORF1a":["G1307S"],"ORF8":["A15T"],"S":["K444T"]},"labels":{"aa":"ORF1a: G1307S; ORF8: A15T; S: K444T","spike_mutations":"K444T"}}}]},{"name":"NODE_0000397","node_attrs":{"div":70,"partiallyAliased":{"value":"XBC.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-7.357549810154802}},"branch_attrs":{"mutations":{"nuc":["C1437T","C22916A"],"ORF1a":["S391F"],"S":["L452M"]},"labels":{"aa":"ORF1a: S391F; S: L452M","spike_mutations":"L452M"}},"children":[{"name":"XBC.1","node_attrs":{"div":70,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2022-10-03"},"Nextclade_pango":{"value":"XBC.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":57},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-7.357549810154802}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000398","node_attrs":{"div":71,"partiallyAliased":{"value":"XBC.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.284153778665361}},"branch_attrs":{"mutations":{"nuc":["C10029T"],"ORF1a":["T3255I"]},"labels":{"aa":"ORF1a: T3255I"}},"children":[{"name":"XBC.1.4","node_attrs":{"div":76,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XBC.1.4"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":62},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032101177532928}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","C12119T","T12480C","A15847C","G22112A","C28807A"],"ORF1a":["G82-","H83-","V84-","P3952S","V4072A"],"ORF1b":["T794P"],"S":["G184S"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, P3952S, V4072A; ORF1b: T794P; S: G184S","spike_mutations":"G184S"}}},{"name":"XBC.1.5","node_attrs":{"div":75,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBC.1.5"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":60},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.030657953685578}},"branch_attrs":{"mutations":{"nuc":["C44T","C2388T","C6255T","A10042C"],"ORF1a":["T708I","A1997V"]},"labels":{"aa":"ORF1a: T708I, A1997V"}}},{"name":"NODE_0000399","node_attrs":{"div":72,"partiallyAliased":{"value":"XBC.1.2"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.2"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.721520357547092}},"branch_attrs":{"mutations":{"nuc":["T11269C"]}},"children":[{"name":"XBC.1.2","node_attrs":{"div":72,"totalAminoacidDeletions":{"value":7},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"XBC.1.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":58},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.721520357547092}},"branch_attrs":{"mutations":{"nuc":["-27792T","-27793T"],"ORF7b":["-13F"]},"labels":{"aa":"ORF7b: -13F"}}},{"name":"XBC.1.2.1","node_attrs":{"div":78,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"XBC.1.2.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":59},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.845733590982635}},"branch_attrs":{"mutations":{"nuc":["G188A","C5314A","C10741T","C13862T","C20178T","T22846C"],"ORF1b":["T132I"]},"labels":{"aa":"ORF1b: T132I"}}}]},{"name":"NODE_0000400","node_attrs":{"div":78,"partiallyAliased":{"value":"XBC.1.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.796266663706599}},"branch_attrs":{"mutations":{"nuc":["G248T","A686-","A687-","G688-","T689-","C690-","A691-","T692-","T693-","T694-","T1564C","T4885C","G8353A","T11121C","C27002T","G28233C"],"ORF1a":["K141-","S142-","F143-","I3619T"],"ORF8":["V114L"]},"labels":{"aa":"ORF1a: K141-, S142-, F143-, I3619T; ORF8: V114L"}},"children":[{"name":"XBC.1.1","node_attrs":{"div":78,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"XBC.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":60},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.796266663706599}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000401","node_attrs":{"div":79,"partiallyAliased":{"value":"XBC.1.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.521381035248432}},"branch_attrs":{"mutations":{"nuc":["G8851T"]}},"children":[{"name":"XBC.1.1.1","node_attrs":{"div":80,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5544380787625834"},"partiallyAliased":{"value":"XBC.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.11213999999999996"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"XBC.1.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":61},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.508009879224266}},"branch_attrs":{"mutations":{"nuc":["G22988A"],"S":["G476S"]},"labels":{"aa":"S: G476S","spike_mutations":"G476S"}}},{"name":"XBC.1.1.2","node_attrs":{"div":85,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBC.1.1.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":63},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032141391481691}},"branch_attrs":{"mutations":{"nuc":["C635T","C1684T","T13019C","C26177T","C27494T","C27849T"],"ORF1a":["R124C"],"ORF3a":["P262L"],"ORF7a":["P34L"]},"labels":{"aa":"ORF1a: R124C; ORF3a: P262L; ORF7a: P34L"}}}]}]},{"name":"NODE_0000402","node_attrs":{"div":76,"partiallyAliased":{"value":"XBC.1.7"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.7"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-6.013008824858976}},"branch_attrs":{"mutations":{"nuc":["A17207G","A22893C","A22995G","C23188T","C27434T"],"ORF1b":["Y1247C"],"ORF7a":["T14I"],"S":["K444T","K478R"]},"labels":{"aa":"ORF1b: Y1247C; ORF7a: T14I; S: K444T, K478R","spike_mutations":"K444T, K478R"}},"children":[{"name":"XBC.1.7","node_attrs":{"div":76,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.6497018622602189"},"partiallyAliased":{"value":"XBC.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5473299999999999"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBC.1.7"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":61},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.013008824858976}},"branch_attrs":{"mutations":{}}},{"name":"XBC.1.7.1","node_attrs":{"div":78,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.6497018622602189"},"partiallyAliased":{"value":"XBC.1.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5473299999999999"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XBC.1.7.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":62},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.179575406189935}},"branch_attrs":{"mutations":{"nuc":["C4586T","A22116G"],"S":["N185S"]},"labels":{"aa":"S: N185S","spike_mutations":"N185S"}}},{"name":"XBC.1.7.2","node_attrs":{"div":80,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.6497018622602189"},"partiallyAliased":{"value":"XBC.1.7.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.5473299999999999"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XBC.1.7.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":63},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.89291192347062}},"branch_attrs":{"mutations":{"nuc":["C44T","G3281A","C22458T","G27798T"],"ORF1a":["V1006I"],"S":["T299I"]},"labels":{"aa":"ORF1a: V1006I; S: T299I","spike_mutations":"T299I"}}}]},{"name":"NODE_0000403","node_attrs":{"div":72,"partiallyAliased":{"value":"XBC.1.3"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.3"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.310934811855205}},"branch_attrs":{"mutations":{"nuc":["C25614T"]}},"children":[{"name":"XBC.1.3","node_attrs":{"div":72,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-02-11"},"Nextclade_pango":{"value":"XBC.1.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":58},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.310934811855205}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000404","node_attrs":{"div":78,"partiallyAliased":{"value":"XBC.1.3.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.3.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.945061401966177}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","C1628A","C6145T","T6447C","C12786T","G15743A","A25910G","T27565-","G27566-","C27567-","T27568-","T27569-","T27570-","A27571-","G27572-","C27573-","A27574-","C27575-","T27576-","C27577-","A27578-","A27579-","T27580-"],"ORF1a":["G82-","H83-","V84-","M85-","V86-","Q455K","V2061A","T4174I"],"ORF1b":["S759N"],"ORF3a":["D173G"],"ORF7a":["C58-","F59-","S60-","T61-","Q62-","F63-","A64-","F65-"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-, Q455K, V2061A, T4174I; ORF1b: S759N; ORF3a: D173G; ORF7a: C58-, F59-, S60-, T61-, Q62-, F63-, A64-, F65-"}},"children":[{"name":"XBC.1.3.1","node_attrs":{"div":78,"totalAminoacidDeletions":{"value":19},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"XBC.1.3.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":61},"frameShifts":{"value":"ORF7a:64-122,ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.945061401966177}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000405","node_attrs":{"div":79,"partiallyAliased":{"value":"XBC.1.3.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.3.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.502472031055868}},"branch_attrs":{"mutations":{"nuc":["A3063T","T27581-","T27582-","G27583-","C27584-","T27585-","T27586-"],"ORF1a":["E933V"]},"labels":{"aa":"ORF1a: E933V"}},"children":[{"name":"KD.1","node_attrs":{"div":80,"totalAminoacidDeletions":{"value":21},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.7857899999999999"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"KD.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":63},"frameShifts":{"value":"ORF7a:66-122,ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.429131454194941}},"branch_attrs":{"mutations":{"nuc":["A22600T"],"S":["R346S"]},"labels":{"aa":"S: R346S","spike_mutations":"R346S"}}},{"name":"KD.2","node_attrs":{"div":85,"totalAminoacidDeletions":{"value":21},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.3.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"KD.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"frameShifts":{"value":"ORF7a:66-122,ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.929566669956626}},"branch_attrs":{"mutations":{"nuc":["C44T","C6286T","A11246T","G12067T","T22963C","C25844T"],"ORF1a":["M3661L","M3934I"],"ORF3a":["T151I"]},"labels":{"aa":"ORF1a: M3661L, M3934I; ORF3a: T151I"}}},{"name":"KD.3","node_attrs":{"div":81,"totalAminoacidDeletions":{"value":21},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.3.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"KD.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":62},"frameShifts":{"value":"ORF7a:66-122,ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.724201245148728}},"branch_attrs":{"mutations":{"nuc":["C10519T","C19524T"]}}},{"name":"KD.4","node_attrs":{"div":83,"totalAminoacidDeletions":{"value":19},"immune_escape":{"value":"0.5283458529692266"},"partiallyAliased":{"value":"XBC.1.3.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.79272"},"designation_date":{"value":"2023-12-01"},"Nextclade_pango":{"value":"KD.4"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":65},"frameShifts":{"value":"ORF7a:64-122,ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.9032339586552425}},"branch_attrs":{"mutations":{"nuc":["A1446G","C2453T","C3159T","C16092T","-27582T","-27583G","-27584C","-27585T","-27586T"],"ORF1a":["K394R","L730F","T965I"]},"labels":{"aa":"ORF1a: K394R, L730F, T965I"}}}]}]}]},{"name":"NODE_0000406","node_attrs":{"div":84,"partiallyAliased":{"value":"XBC.1.6"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.6"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.449099422212815}},"branch_attrs":{"mutations":{"nuc":["C2334T","G3606T","C8240T","C8782T","C12733T","C15180T","T16986C","A17233G","A22600T","T22917G","T24529C","C25603T","C28801T"],"ORF1a":["A690V","C1114F","H2659Y"],"ORF1b":["I1256V"],"S":["R346S","M452R"]},"labels":{"aa":"ORF1a: A690V, C1114F, H2659Y; ORF1b: I1256V; S: R346S, M452R","spike_mutations":"R346S, M452R"}},"children":[{"name":"XBC.1.6","node_attrs":{"div":84,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-03-16"},"Nextclade_pango":{"value":"XBC.1.6"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":63},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.449099422212815}},"branch_attrs":{"mutations":{}}},{"name":"XBC.1.6.2","node_attrs":{"div":85,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-04-23"},"Nextclade_pango":{"value":"XBC.1.6.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7868507559185245}},"branch_attrs":{"mutations":{"nuc":["G2744A"],"ORF1a":["D827N"]},"labels":{"aa":"ORF1a: D827N"}}},{"name":"XBC.1.6.4","node_attrs":{"div":87,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-06-14"},"Nextclade_pango":{"value":"XBC.1.6.4"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.846675825377844}},"branch_attrs":{"mutations":{"nuc":["T3214C","G3614A","T20286C"],"ORF1a":["V1117I"]},"labels":{"aa":"ORF1a: V1117I"}}},{"name":"XBC.1.6.5","node_attrs":{"div":88,"totalAminoacidDeletions":{"value":11},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"XBC.1.6.5"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.879313994574544}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","C1594T","A11830G","C15601T","C27661T"],"ORF1a":["G82-","H83-","V84-","M85V"],"ORF1b":["R712C"],"ORF7a":["Q90*"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85V; ORF1b: R712C; ORF7a: Q90*"}}},{"name":"NODE_0000407","node_attrs":{"div":85,"partiallyAliased":{"value":"XBC.1.6.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.6.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.893438526112029}},"branch_attrs":{"mutations":{"nuc":["C28000T"],"ORF8":["P36L"]},"labels":{"aa":"ORF8: P36L"}},"children":[{"name":"GT.1","node_attrs":{"div":88,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-06-14"},"Nextclade_pango":{"value":"GT.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.253545366528122}},"branch_attrs":{"mutations":{"nuc":["C44T","A21875G","C28333T"],"ORF9b":["P17L"],"S":["I105V"]},"labels":{"aa":"ORF9b: P17L; S: I105V","spike_mutations":"I105V"}}},{"name":"XBC.1.6.1","node_attrs":{"div":85,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-04-23"},"Nextclade_pango":{"value":"XBC.1.6.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.893438526112029}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000408","node_attrs":{"div":87,"partiallyAliased":{"value":"XBC.1.6.6"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.6.6"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.55356560634714}},"branch_attrs":{"mutations":{"nuc":["T8707C","C10156T","C26735T"]}},"children":[{"name":"JT.1","node_attrs":{"div":89,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.8117095003405415"},"partiallyAliased":{"value":"XBC.1.6.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.47217000000000003"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"JT.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004110400819608}},"branch_attrs":{"mutations":{"nuc":["C21T","G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","T22896C"],"ORF1a":["G82-","H83-","V84-","M85-","V86-"],"S":["V445A"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-; S: V445A","spike_mutations":"V445A"}}},{"name":"XBC.1.6.6","node_attrs":{"div":87,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"XBC.1.6.6"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":63},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.55356560634714}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000409","node_attrs":{"div":86,"partiallyAliased":{"value":"XBC.1.6.3"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"XBC.1.6.3"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-5.411463276784222}},"branch_attrs":{"mutations":{"nuc":["C13297T","C28791T"],"N":["A173V"]},"labels":{"aa":"N: A173V"}},"children":[{"name":"XBC.1.6.3","node_attrs":{"div":86,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-04-23"},"Nextclade_pango":{"value":"XBC.1.6.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":64},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.411463276784222}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000410","node_attrs":{"div":89,"partiallyAliased":{"value":"XBC.1.6.3.1"},"clade_membership":{"value":"recombinant"},"clade_who":{"value":"recombinant"},"clade_display":{"value":"recombinant"},"Nextclade_pango":{"value":"HW.1"},"clade_nextstrain":{"value":"recombinant"},"placement_prior":{"value":-4.773098942923571}},"branch_attrs":{"mutations":{"nuc":["C44T","C5055T","C6633T"],"ORF1a":["T1597I","A2123V"]},"labels":{"aa":"ORF1a: T1597I, A2123V"}},"children":[{"name":"HW.1","node_attrs":{"div":90,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-08-02"},"Nextclade_pango":{"value":"HW.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.773098942923571}},"branch_attrs":{"mutations":{"nuc":["T44C"]}}},{"name":"HW.1.1","node_attrs":{"div":92,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7972536878373704"},"partiallyAliased":{"value":"XBC.1.6.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.63844"},"designation_date":{"value":"2023-08-02"},"Nextclade_pango":{"value":"HW.1.1"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.575119497395657}},"branch_attrs":{"mutations":{"nuc":["T16242A","C22120T","A22940C"],"S":["N460H"]},"labels":{"aa":"S: N460H","spike_mutations":"N460H"}}},{"name":"HW.1.2","node_attrs":{"div":90,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.3.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HW.1.2"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":66},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062021037099186}},"branch_attrs":{"mutations":{"nuc":["G15957A"]}}},{"name":"HW.1.3","node_attrs":{"div":90,"totalAminoacidDeletions":{"value":8},"immune_escape":{"value":"0.7474248999007032"},"partiallyAliased":{"value":"XBC.1.6.3.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"recombinant"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"recombinant"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"recombinant"},"ace2_binding":{"value":"0.6392699999999999"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HW.1.3"},"clade_nextstrain":{"value":"recombinant"},"totalAminoacidSubstitutions":{"value":67},"frameShifts":{"value":"ORF7b:14-44"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363615664186897}},"branch_attrs":{"mutations":{"nuc":["C29445T"],"N":["T391I"]},"labels":{"aa":"N: T391I"}}}]}]}]}]}]}]}]},{"name":"internal_XBB","node_attrs":{"div":26,"partiallyAliased":{"value":"XBB"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.395897718495237}},"branch_attrs":{"mutations":{"nuc":["A1G","C44T","A405G","C9866T","T11288-","T11289-","T11290-","T11291-","T11292-","T11293-","T11294-","T11295-","T11296-","G15451A","C15738T","T15939C","T16342C","T17859C","A19326G","T21633-","T21634-","T21635-","T21636-","T21637-","T21638-","T21639-","T21640-","T21641-","T21810C","T21992-","A21993-","T21994-","C22000A","C22109G","G22200A","G22577C","G22599C","C22664A","G22895C","T22896C","G22898A","T22942G","T23019C","T23031C","G23040A","C25416T","A26275G","T28362-","T28363-","T28364-","T28365-","T28366-","T28367-","T28368-","T28369-","T28370-","T29734-","T29735-","T29736-","T29737-","T29738-","T29739-","T29740-","T29741-","T29742-","T29743-","T29744-","T29745-","T29746-","T29747-","T29748-","T29749-","T29750-","T29751-","T29752-","T29753-","T29754-","T29755-","T29756-","T29757-","T29758-","T29759G"],"E":["T11A"],"ORF1a":["K47R","L3201F"],"ORF1b":["G662S","S959P"],"S":["V83A","Y144-","H146Q","Q183E","G213E","D339H","R346T","L368I","V445P","G446S","N460K","F486S","F490S","R493Q"]},"labels":{"aa":"E: T11A; ORF1a: K47R, L3201F; ORF1b: G662S, S959P; S: V83A, Y144-, H146Q, Q183E, G213E, D339H, R346T, L368I, V445P, G446S, N460K, F486S, F490S, R493Q","clade":"22F","spike_mutations":"V83A, Y144-, H146Q, Q183E, G213E, D339H, R346T, L368I, V445P, G446S, N460K, F486S, F490S, R493Q"}},"children":[{"name":"XBB","node_attrs":{"div":26,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-09-17"},"Nextclade_pango":{"value":"XBB"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":63},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.395897718495237}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000412","node_attrs":{"div":26,"partiallyAliased":{"value":"XBB"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.395897718495237}},"branch_attrs":{"mutations":{"nuc":["G29759-"]}},"children":[{"name":"NODE_0000413","node_attrs":{"div":27,"partiallyAliased":{"value":"XBB"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-3.983442865563826}},"branch_attrs":{"mutations":{"nuc":["G510A"],"ORF1a":["G82D"]},"labels":{"aa":"ORF1a: G82D"}},"children":[{"name":"XBB.9","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-04-24"},"Nextclade_pango":{"value":"XBB.9"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.208789711092445}},"branch_attrs":{"mutations":{"nuc":["T44C","T5851C","G8861A","G11516T","C17502T","C28419T"],"N":["T49I"],"ORF1a":["V2866M","V3751F"]},"labels":{"aa":"N: T49I; ORF1a: V2866M, V3751F"}}},{"name":"NODE_0000414","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.4"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.4"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.782022789455717}},"branch_attrs":{"mutations":{"nuc":["A22893G"],"S":["K444R"]},"labels":{"aa":"S: K444R","spike_mutations":"K444R"}},"children":[{"name":"XBB.4","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9799146282531407"},"partiallyAliased":{"value":"XBB.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.3064099999999999"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"XBB.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.782022789455717}},"branch_attrs":{"mutations":{}}},{"name":"XBB.4.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0291905942537165"},"partiallyAliased":{"value":"XBB.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.26627999999999996"},"designation_date":{"value":"2022-11-03"},"Nextclade_pango":{"value":"XBB.4.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.796222014232992}},"branch_attrs":{"mutations":{"nuc":["C3784T","A3946G","T5218A","C6628T","C21575T","C22971A"],"ORF1a":["N1651K"],"S":["L5F","T470N"]},"labels":{"aa":"ORF1a: N1651K; S: L5F, T470N","spike_mutations":"L5F, T470N"}}}]},{"name":"NODE_0000415","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.658657543324469}},"branch_attrs":{"mutations":{"nuc":["G5518A"]}},"children":[{"name":"XBB.5","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"XBB.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.424149823847459}},"branch_attrs":{"mutations":{"nuc":["C23520T"],"S":["A653V"]},"labels":{"aa":"S: A653V","spike_mutations":"A653V"}}},{"name":"XBB.7","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-01-31"},"Nextclade_pango":{"value":"XBB.7"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731336397073195}},"branch_attrs":{"mutations":{"nuc":["C106T","A6193G","T20040C","G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}}}]},{"name":"NODE_0000416","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.6"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.6"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.398453793337685}},"branch_attrs":{"mutations":{"nuc":["C14178T"]}},"children":[{"name":"XBB.6","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XBB.6"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.398453793337685}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.6.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XBB.6.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6794248319116205}},"branch_attrs":{"mutations":{"nuc":["C14362T","C22792A","T23018C","C25539T"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}}}]},{"name":"NODE_0000417","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.8"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.8"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.059165971406066}},"branch_attrs":{"mutations":{"nuc":["T14574C"]}},"children":[{"name":"XBB.8","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.8"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.059165971406066}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"NODE_0000418","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.8"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.8"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.714719832460795}},"branch_attrs":{"mutations":{"nuc":["T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"XBB.8.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-24"},"Nextclade_pango":{"value":"XBB.8.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.00461579432308}},"branch_attrs":{"mutations":{"nuc":["G2167T","A8437G","A10323G","C25665T"],"ORF1a":["K634N","K3353R"]},"labels":{"aa":"ORF1a: K634N, K3353R"}}},{"name":"XBB.8.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.8.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-07"},"Nextclade_pango":{"value":"XBB.8.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.470166316625067}},"branch_attrs":{"mutations":{"nuc":["T1507G","C7851T"],"ORF1a":["A2529V"]},"labels":{"aa":"ORF1a: A2529V"}}}]}]},{"name":"NODE_0000419","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.3"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.3"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.412792306757136}},"branch_attrs":{"mutations":{"nuc":["A19459G"],"ORF1b":["I1998V"]},"labels":{"aa":"ORF1b: I1998V"}},"children":[{"name":"XBB.3","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"XBB.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.412792306757136}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.3.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"XBB.3.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.703075412478807}},"branch_attrs":{"mutations":{"nuc":["C8146T","T22092C","C28054T"],"ORF8":["S54L"],"S":["M177T"]},"labels":{"aa":"ORF8: S54L; S: M177T","spike_mutations":"M177T"}}},{"name":"XBB.3.4","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-04-24"},"Nextclade_pango":{"value":"XBB.3.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.013782293179723}},"branch_attrs":{"mutations":{"nuc":["C3961T","A24532C"],"S":["E990D"]},"labels":{"aa":"S: E990D","spike_mutations":"E990D"}}},{"name":"XBB.3.5","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.3.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8594549033410175}},"branch_attrs":{"mutations":{"nuc":["T44C","G219T","C12513T"],"ORF1a":["T4083M"]},"labels":{"aa":"ORF1a: T4083M"}}},{"name":"NODE_0000420","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.3"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.3"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.844934706763706}},"branch_attrs":{"mutations":{"nuc":["T1993C"]}},"children":[{"name":"XBB.3.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-10-20"},"Nextclade_pango":{"value":"XBB.3.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.299592986489761}},"branch_attrs":{"mutations":{"nuc":["A23592G"],"S":["Q677R"]},"labels":{"aa":"S: Q677R","spike_mutations":"Q677R"}}},{"name":"XBB.3.3","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-12-24"},"Nextclade_pango":{"value":"XBB.3.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.60648321847616}},"branch_attrs":{"mutations":{"nuc":["C601T","G15025A","G24926T"],"ORF1b":["A520T"],"S":["V1122L"]},"labels":{"aa":"ORF1b: A520T; S: V1122L","spike_mutations":"V1122L"}}}]}]}]},{"name":"NODE_0000421","node_attrs":{"div":27,"partiallyAliased":{"value":"XBB.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.18890003497392}},"branch_attrs":{"mutations":{"nuc":["A22320G"],"S":["D253G"]},"labels":{"aa":"S: D253G","spike_mutations":"D253G"}},"children":[{"name":"XBB.2","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"XBB.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.18890003497392}},"branch_attrs":{"mutations":{}}},{"name":"XBB.2.12","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.2.12"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363555197720019}},"branch_attrs":{"mutations":{"nuc":["C4090T","G21255T","G23401C","T24194C"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}}},{"name":"XBB.2.4","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-03"},"Nextclade_pango":{"value":"XBB.2.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.170799193779227}},"branch_attrs":{"mutations":{"nuc":["T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}}},{"name":"XBB.2.5","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBB.2.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6471899884176455}},"branch_attrs":{"mutations":{"nuc":["G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}}},{"name":"XBB.2.8","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.2.8"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.292987349703431}},"branch_attrs":{"mutations":{"nuc":["C6968T"]}}},{"name":"XBB.2.9","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-11"},"Nextclade_pango":{"value":"XBB.2.9"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.898536867495279}},"branch_attrs":{"mutations":{"nuc":["T3A","G6344A","A21231G","T23018C","T29859C","G29862-","A29863-","G29864-","A29865-","A29866-","T29867A"],"ORF1a":["V2027I"],"S":["S486P"]},"labels":{"aa":"ORF1a: V2027I; S: S486P","spike_mutations":"S486P"}}},{"name":"NODE_0000422","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.2.11"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.2.11"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.5848729116222025}},"branch_attrs":{"mutations":{"nuc":["C18129T"]}},"children":[{"name":"XBB.2.11","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.2.11"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5848729116222025}},"branch_attrs":{"mutations":{}}},{"name":"XBB.2.11.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.2.11.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"frameShifts":{"value":"ORF8:122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.289709514448689}},"branch_attrs":{"mutations":{"nuc":["C4084T","C9559T","T16521C","A28254-"],"ORF8":["I121-"]},"labels":{"aa":"ORF8: I121-"}}}]},{"name":"NODE_0000423","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.2.7"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.2.7"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.190642645554344}},"branch_attrs":{"mutations":{"nuc":["G11250A"],"ORF1a":["R3662H"]},"labels":{"aa":"ORF1a: R3662H"}},"children":[{"name":"XBB.2.7","node_attrs":{"div":28,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.2.7"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.190642645554344}},"branch_attrs":{"mutations":{}}},{"name":"XBB.2.7.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9203893783704078"},"partiallyAliased":{"value":"XBB.2.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.65097"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.2.7.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731336397073195}},"branch_attrs":{"mutations":{"nuc":["A1015C","C12400T","C20316T","A22920T","A22994C"],"ORF1a":["E250D"],"S":["Y453F","K478Q"]},"labels":{"aa":"ORF1a: E250D; S: Y453F, K478Q","spike_mutations":"Y453F, K478Q"}}}]},{"name":"NODE_0000424","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.976045975610319}},"branch_attrs":{"mutations":{"nuc":["G25855T"],"ORF3a":["D155Y"]},"labels":{"aa":"ORF3a: D155Y"}},"children":[{"name":"XBB.2.10","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"XBB.2.10"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094426159553065}},"branch_attrs":{"mutations":{"nuc":["G21718T","A22531G","T28912C"],"S":["Q52H"]},"labels":{"aa":"S: Q52H","spike_mutations":"Q52H"}}},{"name":"NODE_0000425","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.905913034429142}},"branch_attrs":{"mutations":{"nuc":["A5236G","C21812T"]}},"children":[{"name":"XBB.2.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"XBB.2.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.951464685933622}},"branch_attrs":{"mutations":{"nuc":["A23853G"],"S":["K764R"]},"labels":{"aa":"S: K764R","spike_mutations":"K764R"}}},{"name":"XBB.2.2","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"XBB.2.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.784151901279599}},"branch_attrs":{"mutations":{"nuc":["G23401T","C29642T","T29855A"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}}}]}]},{"name":"NODE_0000426","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.2.6"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.2.6"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-3.632244242075142}},"branch_attrs":{"mutations":{"nuc":["T44C","C5144T","T5731A"]}},"children":[{"name":"XBB.2.6","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.2.6"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.632244242075142}},"branch_attrs":{"mutations":{}}},{"name":"XBB.2.6.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.2.6.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777290959927652}},"branch_attrs":{"mutations":{"nuc":["A21617C"],"S":["I19L"]},"labels":{"aa":"S: I19L","spike_mutations":"I19L"}}},{"name":"XBB.2.6.3","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.2.6.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.2.6.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363555197720019}},"branch_attrs":{"mutations":{"nuc":["C222T","C24210T","C25587T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"NODE_0000427","node_attrs":{"div":31,"partiallyAliased":{"value":"XBB.2.6.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.2.6.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.0364331662489175}},"branch_attrs":{"mutations":{"nuc":["C23123T"],"S":["P521S"]},"labels":{"aa":"S: P521S","spike_mutations":"P521S"}},"children":[{"name":"GH.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.35217"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"GH.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.71740515036454}},"branch_attrs":{"mutations":{"nuc":["T6895C","T9148C","A15192C","C28435A"],"ORF9b":["P51Q"]},"labels":{"aa":"ORF9b: P51Q"}}},{"name":"XBB.2.6.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.35217"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.2.6.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.0364331662489175}},"branch_attrs":{"mutations":{}}}]}]},{"name":"NODE_0000428","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.2.3"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-3.8039713691739987}},"branch_attrs":{"mutations":{"nuc":["C4234T","G6536A","C16342T","T23018C","C23123T","C27431T","G29706T"],"ORF1a":["G2091S"],"ORF1b":["P959S"],"ORF7a":["A13V"],"S":["S486P","P521S"]},"labels":{"aa":"ORF1a: G2091S; ORF1b: P959S; ORF7a: A13V; S: S486P, P521S","clade":"23E","spike_mutations":"S486P, P521S"}},"children":[{"name":"XBB.2.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-01-31"},"Nextclade_pango":{"value":"XBB.2.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8039713691739987}},"branch_attrs":{"mutations":{}}},{"name":"XBB.2.3.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.2.3.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.74638262812336}},"branch_attrs":{"mutations":{"nuc":["T44C","C6031T","C11824T","G14188A","G19254A","G21800T","C27532T"],"ORF1b":["A241T"],"ORF7a":["H47Y"],"S":["D80Y"]},"labels":{"aa":"ORF1b: A241T; ORF7a: H47Y; S: D80Y","spike_mutations":"D80Y"}}},{"name":"XBB.2.3.14","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"XBB.2.3.14"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.840693767148026}},"branch_attrs":{"mutations":{"nuc":["G3259T"],"ORF1a":["Q998H"]},"labels":{"aa":"ORF1a: Q998H"}}},{"name":"XBB.2.3.18","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1316302245230698"},"partiallyAliased":{"value":"XBB.2.3.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.0750199999999999"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XBB.2.3.18"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731523430998813}},"branch_attrs":{"mutations":{"nuc":["T10852C","A18702G","T18996A","A22910G","T22930A","A25253G","C27450T","C27879T","C29296T"],"ORF7b":["H42Y"],"S":["N450D","F456L","T1231A"]},"labels":{"aa":"ORF7b: H42Y; S: N450D, F456L, T1231A","spike_mutations":"N450D, F456L, T1231A"}}},{"name":"XBB.2.3.20","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XBB.2.3.20"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.71740515036454}},"branch_attrs":{"mutations":{"nuc":["T18882C","A22190-","T22191-","T22192-","T27992A","G29072T"],"N":["A267S"],"S":["I210-"]},"labels":{"aa":"N: A267S; S: I210-","spike_mutations":"I210-"}}},{"name":"XBB.2.3.21","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.2.3.21"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":2.777778},"placement_prior":{"value":-4.810818882106859}},"branch_attrs":{"mutations":{"nuc":["G670T","C2119T","G9389A","C13959T","G14712T","C24210T","C25797T"],"ORF1a":["R135S","D3042N"],"S":["T883I"]},"labels":{"aa":"ORF1a: R135S, D3042N; S: T883I","spike_mutations":"T883I"}}},{"name":"XBB.2.3.22","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.2.3.22"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0.173611},"placement_prior":{"value":-5.296629368951236}},"branch_attrs":{"mutations":{"nuc":["T44C","T24371A","C27389T","A28174C"],"ORF8":["K94T"],"S":["S937T"]},"labels":{"aa":"ORF8: K94T; S: S937T","spike_mutations":"S937T"}}},{"name":"XBB.2.3.5","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.84876"},"designation_date":{"value":"2023-04-12"},"Nextclade_pango":{"value":"XBB.2.3.5"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3888901219875445}},"branch_attrs":{"mutations":{"nuc":["C18570T","A22996T"],"S":["K478N"]},"labels":{"aa":"S: K478N","spike_mutations":"K478N"}}},{"name":"XBB.2.3.7","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-04-19"},"Nextclade_pango":{"value":"XBB.2.3.7"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6280380540321735}},"branch_attrs":{"mutations":{"nuc":["C12525T"],"ORF1a":["T4087I"]},"labels":{"aa":"ORF1a: T4087I"}}},{"name":"XBB.2.3.9","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-05-04"},"Nextclade_pango":{"value":"XBB.2.3.9"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167313909487077}},"branch_attrs":{"mutations":{"nuc":["C18744T","C19200T","C21855T"],"S":["S98F"]},"labels":{"aa":"S: S98F","spike_mutations":"S98F"}}},{"name":"internal_79cf744b","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.2.3.4"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.4"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.930659233884288}},"branch_attrs":{"mutations":{"nuc":["T44C","A22994C"],"S":["K478Q"]},"labels":{"aa":"S: K478Q","spike_mutations":"K478Q"}},"children":[{"name":"GZ.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.92117"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"GZ.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7369017437481435}},"branch_attrs":{"mutations":{"nuc":["C22120A"],"S":["F186L"]},"labels":{"aa":"S: F186L","spike_mutations":"F186L"}}},{"name":"XBB.2.3.4","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.92117"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"XBB.2.3.4"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.930659233884288}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_adf2a409","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.2.3.13"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.13"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.128650028688554}},"branch_attrs":{"mutations":{"nuc":["C5730T"],"ORF1a":["T1822I"]},"labels":{"aa":"ORF1a: T1822I"}},"children":[{"name":"JA.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0236649625389451"},"partiallyAliased":{"value":"XBB.2.3.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.13359999999999994"},"designation_date":{"value":"2023-08-10"},"Nextclade_pango":{"value":"JA.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.858955868376643}},"branch_attrs":{"mutations":{"nuc":["T22928C","C29870A"],"S":["F456L"]},"labels":{"aa":"S: F456L","spike_mutations":"F456L"}}},{"name":"XBB.2.3.13","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"XBB.2.3.13"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.128650028688554}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_db218ab3","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.2.3.12"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.12"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.151283574475297}},"branch_attrs":{"mutations":{"nuc":["T23042C"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}},"children":[{"name":"JU.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.020431962752205"},"partiallyAliased":{"value":"XBB.2.3.12.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.84789"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JU.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.252402410042342}},"branch_attrs":{"mutations":{"nuc":["A22005C","A22215G","A22910G","C28473T","G29800A"],"N":["P67L"],"ORF9b":["L64F"],"S":["N148T","Q218R","N450D"]},"labels":{"aa":"N: P67L; ORF9b: L64F; S: N148T, Q218R, N450D","spike_mutations":"N148T, Q218R, N450D"}}},{"name":"XBB.2.3.12","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9307698749546415"},"partiallyAliased":{"value":"XBB.2.3.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.90647"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.2.3.12"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.966433734536272}},"branch_attrs":{"mutations":{"nuc":["A22102G","T28066C"],"ORF8":["I58T"]},"labels":{"aa":"ORF8: I58T"}}}]},{"name":"internal_653955d9","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.2.3"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.658573499553137}},"branch_attrs":{"mutations":{"nuc":["C8266T","G8984A"],"ORF1a":["D2907N"]},"labels":{"aa":"ORF1a: D2907N"}},"children":[{"name":"XBB.2.3.16","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.84876"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"XBB.2.3.16"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.802262404565438}},"branch_attrs":{"mutations":{"nuc":["A22996C"],"S":["K478N"]},"labels":{"aa":"S: K478N","spike_mutations":"K478N"}}},{"name":"XBB.2.3.17","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"1.0074920465087"},"partiallyAliased":{"value":"XBB.2.3.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.89912"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"XBB.2.3.17"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430477534290386}},"branch_attrs":{"mutations":{"nuc":["T14046G","C17976T","A22910G","G26155-","T26156-","T26157-"],"ORF3a":["V255-"],"S":["N450D"]},"labels":{"aa":"ORF3a: V255-; S: N450D","spike_mutations":"N450D"}}}]},{"name":"internal_895420ac","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.2.3.15"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.15"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.898875733659892}},"branch_attrs":{"mutations":{"nuc":["A13187G"],"ORF1a":["I4308V"]},"labels":{"aa":"ORF1a: I4308V"}},"children":[{"name":"JS.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"JS.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.899636203873705}},"branch_attrs":{"mutations":{"nuc":["T22328A"],"S":["S256T"]},"labels":{"aa":"S: S256T","spike_mutations":"S256T"}}},{"name":"JS.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.15.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"JS.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.885655781000664}},"branch_attrs":{"mutations":{"nuc":["G11272T","C22530T"],"ORF1a":["M3669I"],"S":["T323I"]},"labels":{"aa":"ORF1a: M3669I; S: T323I","spike_mutations":"T323I"}}},{"name":"XBB.2.3.15","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"XBB.2.3.15"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.898875733659892}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_374c620c","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.2.3.19"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.19"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.793787123283773}},"branch_attrs":{"mutations":{"nuc":["C5622T","C7303A","G22113T"],"ORF1a":["P1786L"],"S":["G184V"]},"labels":{"aa":"ORF1a: P1786L; S: G184V","spike_mutations":"G184V"}},"children":[{"name":"XBB.2.3.19","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XBB.2.3.19"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.793787123283773}},"branch_attrs":{"mutations":{}}},{"name":"internal_cbee2496","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.2.3.19.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"JY.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.133025199261813}},"branch_attrs":{"mutations":{"nuc":["T44C","C10776T","A21203G","C22624T","A22995C","G23522A"],"ORF1a":["P3504L"],"ORF1b":["K2579R"],"S":["K478T","E654K"]},"labels":{"aa":"ORF1a: P3504L; ORF1b: K2579R; S: K478T, E654K","spike_mutations":"K478T, E654K"}},"children":[{"name":"JY.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.19.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.88039"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JY.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.133025199261813}},"branch_attrs":{"mutations":{}}},{"name":"JY.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.19.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.88039"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JY.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.083847915789896}},"branch_attrs":{"mutations":{"nuc":["C24912A","C27494T"],"ORF7a":["P34L"],"S":["T1117K"]},"labels":{"aa":"ORF7a: P34L; S: T1117K","spike_mutations":"T1117K"}}}]}]},{"name":"internal_560e5d25","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.2.3.6"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.6"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.757758745771124}},"branch_attrs":{"mutations":{"nuc":["C1063T","C7105T","T22843C","C28770T"],"N":["T166I"]},"labels":{"aa":"N: T166I"}},"children":[{"name":"GM.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GM.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16734878087591}},"branch_attrs":{"mutations":{"nuc":["T23269C","C23423T"],"S":["P621S"]},"labels":{"aa":"S: P621S","spike_mutations":"P621S"}}},{"name":"GM.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GM.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430541455854619}},"branch_attrs":{"mutations":{"nuc":["G22103C"],"S":["G181R"]},"labels":{"aa":"S: G181R","spike_mutations":"G181R"}}},{"name":"XBB.2.3.6","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-04-19"},"Nextclade_pango":{"value":"XBB.2.3.6"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.757758745771124}},"branch_attrs":{"mutations":{}}},{"name":"internal_0d35f655","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.2.3.6.3"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GM.3"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.141798020132956}},"branch_attrs":{"mutations":{"nuc":["G12315A"],"ORF1a":["R4017K"]},"labels":{"aa":"ORF1a: R4017K"}},"children":[{"name":"GM.3","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.6.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GM.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.141798020132956}},"branch_attrs":{"mutations":{}}},{"name":"GM.3.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9200168549869868"},"partiallyAliased":{"value":"XBB.2.3.6.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.89932"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GM.3.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.915036496165955}},"branch_attrs":{"mutations":{"nuc":["C9561T","T22726A","G26834T"],"ORF1a":["S3099L"],"S":["N388K"]},"labels":{"aa":"ORF1a: S3099L; S: N388K","spike_mutations":"N388K"}}}]}]},{"name":"internal_cce192fd","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.2.3.8"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.8"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.793787123283773}},"branch_attrs":{"mutations":{"nuc":["C2013T","C11750T","T16389C","A22995G"],"ORF1a":["A583V","L3829F"],"S":["K478R"]},"labels":{"aa":"ORF1a: A583V, L3829F; S: K478R","spike_mutations":"K478R"}},"children":[{"name":"XBB.2.3.8","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-05-01"},"Nextclade_pango":{"value":"XBB.2.3.8"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.793787123283773}},"branch_attrs":{"mutations":{}}},{"name":"internal_77ab5f52","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.2.3.8"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.8"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-3.9555396376340632}},"branch_attrs":{"mutations":{"nuc":["A8621G"],"ORF1a":["I2786V"]},"labels":{"aa":"ORF1a: I2786V"}},"children":[{"name":"HG.2","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.8.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"HG.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.769446876271742}},"branch_attrs":{"mutations":{"nuc":["C8950T","C22338T","T25496C"],"ORF3a":["I35T"],"S":["T259I"]},"labels":{"aa":"ORF3a: I35T; S: T259I","spike_mutations":"T259I"}}},{"name":"HG.3","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.8.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HG.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004644914819115}},"branch_attrs":{"mutations":{"nuc":["C7083T","C22326T"],"ORF1a":["S2273F"],"S":["S255F"]},"labels":{"aa":"ORF1a: S2273F; S: S255F","spike_mutations":"S255F"}}},{"name":"internal_1fee65b5","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.2.3.8.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"HG.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.246527304041407}},"branch_attrs":{"mutations":{"nuc":["C21855T"],"S":["S98F"]},"labels":{"aa":"S: S98F","spike_mutations":"S98F"}},"children":[{"name":"HG.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"HG.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.246527304041407}},"branch_attrs":{"mutations":{}}},{"name":"HG.1.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.8.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HG.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["C17766T","G25130T"],"S":["A1190S"]},"labels":{"aa":"S: A1190S","spike_mutations":"A1190S"}}}]}]}]},{"name":"internal_e9e2","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.2.3.10"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.10"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.557729873097411}},"branch_attrs":{"mutations":{"nuc":["T5947C","C29857-","T29858-","T29859-","A29860-","G29861-","G29862-","A29863-","G29864-","A29865-"]}},"children":[{"name":"XBB.2.3.10","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-05-04"},"Nextclade_pango":{"value":"XBB.2.3.10"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.557729873097411}},"branch_attrs":{"mutations":{}}},{"name":"internal_4477c590","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.2.3.10.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GE.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.364633652931394}},"branch_attrs":{"mutations":{"nuc":["A22116-","T22117-","T22118-","A22995G"],"S":["N185-","F186I","K478R"]},"labels":{"aa":"S: N185-, F186I, K478R","spike_mutations":"N185-, F186I, K478R"}},"children":[{"name":"GE.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"GE.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.364633652931394}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000443","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.2.3.10.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GE.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-3.836384864506815}},"branch_attrs":{"mutations":{"nuc":["A17674G","-29857C","-29858T","-29859T","-29860A","-29861G","-29862G","-29863A","-29864G","-29865A"],"ORF1b":["I1403V"]},"labels":{"aa":"ORF1b: I1403V"}},"children":[{"name":"GE.1.3","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.10.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GE.1.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.492784261708492}},"branch_attrs":{"mutations":{"nuc":["C23757T","T24127C"],"S":["T732I"]},"labels":{"aa":"S: T732I","spike_mutations":"T732I"}}},{"name":"GE.1.4","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.10.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GE.1.4"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.149038337482846}},"branch_attrs":{"mutations":{"nuc":["C10340T","A10912G"],"ORF1a":["P3359S"]},"labels":{"aa":"ORF1a: P3359S"}}},{"name":"GE.1.5","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.10.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GE.1.5"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.39587082243738}},"branch_attrs":{"mutations":{"nuc":["G6352A","C11653T","T16242A"]}}}]},{"name":"NODE_0000444","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.2.3.10.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GE.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.25719659501144}},"branch_attrs":{"mutations":{"nuc":["C601T","G2246A"],"ORF1a":["G661S"]},"labels":{"aa":"ORF1a: G661S"}},"children":[{"name":"GE.1.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.10.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"GE.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8517734257318175}},"branch_attrs":{"mutations":{"nuc":["G23222A","C27476T","-29857C","-29858T","-29859T","-29860A","-29861G","-29862G","-29863A","-29864G","-29865A"],"ORF7a":["T28I"],"S":["E554K"]},"labels":{"aa":"ORF7a: T28I; S: E554K","spike_mutations":"E554K"}}},{"name":"GE.1.6","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.10.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GE.1.6"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.840779170330413}},"branch_attrs":{"mutations":{"nuc":["C6361T","C10228T","G12707A","C21914A","-29857C","-29858T","-29859T","-29860A","-29861G","-29862G","-29863A","-29864G","-29865A"],"ORF1a":["A4148T"],"S":["L118I"]},"labels":{"aa":"ORF1a: A4148T; S: L118I","spike_mutations":"L118I"}}},{"name":"NODE_0000445","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.2.3.10.1.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GE.1.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.236994893118309}},"branch_attrs":{"mutations":{"nuc":["C6026T","T13371C","A22005C","C27688T"],"ORF1a":["P1921S","V4369A"],"ORF7a":["P99S"],"S":["N148T"]},"labels":{"aa":"ORF1a: P1921S, V4369A; ORF7a: P99S; S: N148T","spike_mutations":"N148T"}},"children":[{"name":"GE.1.2","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.10.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"GE.1.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.236994893118309}},"branch_attrs":{"mutations":{}}},{"name":"GE.1.2.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":19},"immune_escape":{"value":"0.9195663671042292"},"partiallyAliased":{"value":"XBB.2.3.10.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.95933"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"GE.1.2.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":50.173611},"placement_prior":{"value":-4.922464208005613}},"branch_attrs":{"mutations":{"nuc":["G509-","G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","T519-","G520-","G521-","T522-","T523-","G22688T","G22995C","C25976G","T27383A","C27384T","G27915T","-29857C","-29858T","-29859T","-29860A","-29861G","-29862G","-29863A","-29864G","-29865A"],"ORF1a":["G82-","H83-","V84-","M85-","V86-"],"ORF3a":["S195C"],"ORF6":["L61H"],"ORF8":["G8*"],"S":["A376S","R478T"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85-, V86-; ORF3a: S195C; ORF6: L61H; ORF8: G8*; S: A376S, R478T","spike_mutations":"A376S, R478T"}}}]}]}]}]},{"name":"internal_0a853857","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.2.3.11"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.11"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.5169452972557}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"XBB.2.3.11","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.2.3.11"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5169452972557}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000447","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.2.3.11"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.11"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.869449538866709}},"branch_attrs":{"mutations":{"nuc":["C4582T","C25075T"]}},"children":[{"name":"GS.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"GS.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5841406394}},"branch_attrs":{"mutations":{"nuc":["T2C","G22201T"],"S":["E213D"]},"labels":{"aa":"S: E213D","spike_mutations":"E213D"}}},{"name":"GS.6","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GS.6"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16734878087591}},"branch_attrs":{"mutations":{"nuc":["A605G","A3899-","A3900-","G3901-","C3902-","C3903-","A3904-","T3905-","T3906-","T3907-","T8156C","G9761A","G14400A","C15182T","C16726T","C17274T","T19839C","C21812T","C23275T","G24095T"],"ORF1a":["I114V","K1212-","P1213-","F1214-","S2631P","V3166I"],"ORF1b":["A572V","H1087Y"],"S":["A845S"]},"labels":{"aa":"ORF1a: I114V, K1212-, P1213-, F1214-, S2631P, V3166I; ORF1b: A572V, H1087Y; S: A845S","spike_mutations":"A845S"}}}]},{"name":"NODE_0000448","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.2.3.11"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.11"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.8616269599709705}},"branch_attrs":{"mutations":{"nuc":["T16389C"]}},"children":[{"name":"GS.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9589675601694769"},"partiallyAliased":{"value":"XBB.2.3.11.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.7709600000000001"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GS.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.390884955521559}},"branch_attrs":{"mutations":{"nuc":["C22971A"],"S":["T470N"]},"labels":{"aa":"S: T470N","spike_mutations":"T470N"}}},{"name":"GS.8","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GS.8"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129571956210234}},"branch_attrs":{"mutations":{"nuc":["G1C","C10156T","C12596T","T15669C","T22618G","A25927G","G29543C"],"ORF1a":["L4111F"],"ORF3a":["I179V"]},"labels":{"aa":"ORF1a: L4111F; ORF3a: I179V"}}}]},{"name":"NODE_0000449","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.2.3.11"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.11"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.885452857443414}},"branch_attrs":{"mutations":{"nuc":["C13608T"]}},"children":[{"name":"GS.3","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GS.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.703241101127572}},"branch_attrs":{"mutations":{"nuc":["C21T","T20455C","G22132T"],"ORF1b":["F2330L"],"S":["R190S"]},"labels":{"aa":"ORF1b: F2330L; S: R190S","spike_mutations":"R190S"}}},{"name":"internal_1f149e33","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.2.3.11.7"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GS.7"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.0134767144150025}},"branch_attrs":{"mutations":{"nuc":["C875A","C14925T"],"ORF1a":["L204I"]},"labels":{"aa":"ORF1a: L204I"}},"children":[{"name":"GS.7","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GS.7"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.0134767144150025}},"branch_attrs":{"mutations":{}}},{"name":"GS.7.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GS.7.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.50979442794143}},"branch_attrs":{"mutations":{"nuc":["T44C","G1820A","T7576C","A8062G","G16065A","G20679T","G22100C","A23941G","C25509T","A28792T"],"ORF1a":["G519S"],"S":["E180Q"]},"labels":{"aa":"ORF1a: G519S; S: E180Q","spike_mutations":"E180Q"}}}]}]},{"name":"NODE_0000451","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.2.3.11"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.11"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.368754623668556}},"branch_attrs":{"mutations":{"nuc":["C26833T","G28371C"],"M":["A104V"],"N":["G30-","-33A"],"ORF9b":["V30L"]},"labels":{"aa":"M: A104V; N: G30-, -33A; ORF9b: V30L"}},"children":[{"name":"GS.5","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-09-22"},"Nextclade_pango":{"value":"GS.5"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430541455854619}},"branch_attrs":{"mutations":{"nuc":["C5730T","T7549C","G22216T"],"ORF1a":["T1822I"],"S":["Q218H"]},"labels":{"aa":"ORF1a: T1822I; S: Q218H","spike_mutations":"Q218H"}}},{"name":"internal_8d5e6c2c","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.2.3.11.4"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GS.4"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.631308360574325}},"branch_attrs":{"mutations":{"nuc":["G806A","G14268A","C25701T"],"ORF1a":["A181T"]},"labels":{"aa":"ORF1a: A181T"}},"children":[{"name":"GS.4","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GS.4"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.631308360574325}},"branch_attrs":{"mutations":{}}},{"name":"internal_4fa3eb54","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.2.3.11.4.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GS.4.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-3.8866496629622898}},"branch_attrs":{"mutations":{"nuc":["A22115G","G25906T"],"ORF3a":["G172C"],"S":["N185D"]},"labels":{"aa":"ORF3a: G172C; S: N185D","spike_mutations":"N185D"}},"children":[{"name":"GS.4.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GS.4.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8866496629622898}},"branch_attrs":{"mutations":{}}},{"name":"GS.4.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.11.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GS.4.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.455089403199952}},"branch_attrs":{"mutations":{"nuc":["C218T","C23243T","G28423T"],"ORF9b":["R47L"],"S":["P561S"]},"labels":{"aa":"ORF9b: R47L; S: P561S","spike_mutations":"P561S"}}}]}]}]}]},{"name":"internal_28f53f8c","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.2.3.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.757525622029025}},"branch_attrs":{"mutations":{"nuc":["T44C","C6740T","G22113T"],"ORF1a":["R2159W"],"S":["G184V"]},"labels":{"aa":"ORF1a: R2159W; S: G184V","spike_mutations":"G184V"}},"children":[{"name":"HH.7","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.7"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.411746996028428}},"branch_attrs":{"mutations":{"nuc":["C5628T"],"ORF1a":["T1788M"]},"labels":{"aa":"ORF1a: T1788M"}}},{"name":"XBB.2.3.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.2.3.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.757525622029025}},"branch_attrs":{"mutations":{}}},{"name":"internal_3673174e","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.2.3.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.621436680514723}},"branch_attrs":{"mutations":{"nuc":["C7162T"]}},"children":[{"name":"HH.5","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.5"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.930001668809095}},"branch_attrs":{"mutations":{"nuc":["C1142A","C12854T","A22003T","C27092T","C27970T"],"ORF1a":["L293I","P4197S"],"ORF8":["T26I"],"S":["K147N"]},"labels":{"aa":"ORF1a: L293I, P4197S; ORF8: T26I; S: K147N","spike_mutations":"K147N"}}},{"name":"HH.6","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.6"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["T3070A","G8368T","T19026C","A22995G","A26675G","G27915A"],"ORF1a":["D935E"],"ORF8":["G8R"],"S":["K478R"]},"labels":{"aa":"ORF1a: D935E; ORF8: G8R; S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_5a805e2a","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.2.3.2.8"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"HH.8"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.76909385013703}},"branch_attrs":{"mutations":{"nuc":["C44T","A23382G","C28657T"],"S":["Q607R"]},"labels":{"aa":"S: Q607R","spike_mutations":"Q607R"}},"children":[{"name":"HH.8","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.8"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.76909385013703}},"branch_attrs":{"mutations":{}}},{"name":"HH.8.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.2.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.8.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"frameShifts":{"value":"ORF8:122"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907256590655717}},"branch_attrs":{"mutations":{"nuc":["A3193G","A22995G","A28254-"],"ORF8":["I121-"],"S":["K478R"]},"labels":{"aa":"ORF8: I121-; S: K478R","spike_mutations":"K478R"}}}]},{"name":"NODE_0000457","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.2.3.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.3404083796079735}},"branch_attrs":{"mutations":{"nuc":["G24193A"]}},"children":[{"name":"HH.4","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.4"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509701249326239}},"branch_attrs":{"mutations":{"nuc":["G24095T","G25793A"],"ORF3a":["R134H"],"S":["A845S"]},"labels":{"aa":"ORF3a: R134H; S: A845S","spike_mutations":"A845S"}}},{"name":"NODE_0000458","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.2.3.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.164152974631467}},"branch_attrs":{"mutations":{"nuc":["C26228A"]}},"children":[{"name":"HH.3","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305629536456585}},"branch_attrs":{"mutations":{"nuc":["C22564T","G25340T"],"S":["D1260Y"]},"labels":{"aa":"S: D1260Y","spike_mutations":"D1260Y"}}},{"name":"internal_818ae7ea","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.2.3.2.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"HH.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.119534313606627}},"branch_attrs":{"mutations":{"nuc":["C9195T","T20697C"],"ORF1a":["T2977I"]},"labels":{"aa":"ORF1a: T2977I"}},"children":[{"name":"HH.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"HH.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.119534313606627}},"branch_attrs":{"mutations":{}}},{"name":"HH.1.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"HH.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5808128454476025}},"branch_attrs":{"mutations":{"nuc":["C13860T","G22104C"],"S":["G181A"]},"labels":{"aa":"S: G181A","spike_mutations":"G181A"}}}]},{"name":"internal_a5f1c7ea","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.2.3.2.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"HH.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.796019801046194}},"branch_attrs":{"mutations":{"nuc":["G407T"],"ORF1a":["D48Y"]},"labels":{"aa":"ORF1a: D48Y"}},"children":[{"name":"HH.2","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"HH.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.796019801046194}},"branch_attrs":{"mutations":{}}},{"name":"HH.2.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.2.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HH.2.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.79518120122728}},"branch_attrs":{"mutations":{"nuc":["C44T","G9973A","C10296T","C21077T","A22995G"],"ORF1a":["S3344F"],"ORF1b":["T2537I"],"S":["K478R"]},"labels":{"aa":"ORF1a: S3344F; ORF1b: T2537I; S: K478R","spike_mutations":"K478R"}}}]}]}]}]},{"name":"NODE_0000461","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.2.3.3"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.3"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.346369316412575}},"branch_attrs":{"mutations":{"nuc":["A22108T"],"S":["K182N"]},"labels":{"aa":"S: K182N","spike_mutations":"K182N"}},"children":[{"name":"GJ.4","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"GJ.4"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.628989352279425}},"branch_attrs":{"mutations":{"nuc":["C1060T","G22021A","T24892C"],"S":["M153I"]},"labels":{"aa":"S: M153I","spike_mutations":"M153I"}}},{"name":"XBB.2.3.3","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"XBB.2.3.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.346369316412575}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000462","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.2.3.3"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"XBB.2.3.3"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.1435939140183065}},"branch_attrs":{"mutations":{"nuc":["C19884T"]}},"children":[{"name":"GJ.2","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"GJ.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.690271924725487}},"branch_attrs":{"mutations":{"nuc":["T44C","T14295C","C15848T","T24903G"],"ORF1b":["T794I"],"S":["I1114S"]},"labels":{"aa":"ORF1b: T794I; S: I1114S","spike_mutations":"I1114S"}}},{"name":"GJ.3","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"GJ.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5320847463607485}},"branch_attrs":{"mutations":{"nuc":["C313T","C3176T","G20578T"],"ORF1a":["P971S"],"ORF1b":["V2371L"]},"labels":{"aa":"ORF1a: P971S; ORF1b: V2371L"}}},{"name":"GJ.6","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0236649625389451"},"partiallyAliased":{"value":"XBB.2.3.3.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.13359999999999994"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GJ.6"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907256590655717}},"branch_attrs":{"mutations":{"nuc":["C2937T","A5706G","T22930A","G26538A"],"M":["G6S"],"ORF1a":["T891I","Y1814C"],"S":["F456L"]},"labels":{"aa":"M: G6S; ORF1a: T891I, Y1814C; S: F456L","spike_mutations":"F456L"}}},{"name":"GJ.7","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GJ.7"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430477534290386}},"branch_attrs":{"mutations":{"nuc":["C18646T","G22109A"],"ORF1b":["P1727S"],"S":["E183K"]},"labels":{"aa":"ORF1b: P1727S; S: E183K","spike_mutations":"E183K"}}},{"name":"internal_27e82a71","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.2.3.3.5"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GJ.5"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.148053327985582}},"branch_attrs":{"mutations":{"nuc":["A11794G","C13138T","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"GJ.5","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"GJ.5"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.148053327985582}},"branch_attrs":{"mutations":{}}},{"name":"GJ.5.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.3.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"GJ.5.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.86635178570115}},"branch_attrs":{"mutations":{"nuc":["C1884T","C12153T","C22326T"],"ORF1a":["A540V","A3963V"],"S":["S255F"]},"labels":{"aa":"ORF1a: A540V, A3963V; S: S255F","spike_mutations":"S255F"}}}]},{"name":"internal_91d6f56e","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.2.3.3.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GJ.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-6.024067833431299}},"branch_attrs":{"mutations":{"nuc":["A12878G","G28209C"],"ORF1a":["I4205V"],"ORF8":["E106Q"]},"labels":{"aa":"ORF1a: I4205V; ORF8: E106Q"}},"children":[{"name":"GJ.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-06-02"},"Nextclade_pango":{"value":"GJ.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.024067833431299}},"branch_attrs":{"mutations":{}}},{"name":"internal_bb60c15c","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.2.3.3.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GJ.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.29486085746556}},"branch_attrs":{"mutations":{"nuc":["C1549T"]}},"children":[{"name":"GJ.1.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"GJ.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.376275963682581}},"branch_attrs":{"mutations":{"nuc":["C1150T","C2902T","A3394T","G6008A","A6948G","C22227T","G29229A"],"N":["R319H"],"ORF1a":["V1915I","N2228S"],"S":["A222V"]},"labels":{"aa":"N: R319H; ORF1a: V1915I, N2228S; S: A222V","spike_mutations":"A222V"}}},{"name":"internal_a7d6c359","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.2.3.3.1.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GJ.1.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.1472129444227335}},"branch_attrs":{"mutations":{"nuc":["C7819G","G16795A"],"ORF1b":["V1110I"]},"labels":{"aa":"ORF1b: V1110I"}},"children":[{"name":"GJ.1.2","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-06-26"},"Nextclade_pango":{"value":"GJ.1.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1472129444227335}},"branch_attrs":{"mutations":{}}},{"name":"GJ.1.2.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"GJ.1.2.2"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.606714309334308}},"branch_attrs":{"mutations":{"nuc":["G3719T","A22995G","T28297C","T29068C"],"ORF1a":["G1152C"],"ORF9b":["I5T"],"S":["K478R"]},"labels":{"aa":"ORF1a: G1152C; ORF9b: I5T; S: K478R","spike_mutations":"K478R"}}},{"name":"GJ.1.2.8","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"GJ.1.2.8"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254495099685522}},"branch_attrs":{"mutations":{"nuc":["T1930G","C23802T","G25690T"],"ORF3a":["G100C"],"S":["T747I"]},"labels":{"aa":"ORF3a: G100C; S: T747I","spike_mutations":"T747I"}}},{"name":"internal_eafb7d93","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.2.3.3.1.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GJ.1.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-4.376275963682581}},"branch_attrs":{"mutations":{"nuc":["C3020T"],"ORF1a":["H919Y"]},"labels":{"aa":"ORF1a: H919Y"}},"children":[{"name":"GJ.1.2.4","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"GJ.1.2.4"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978318039991315}},"branch_attrs":{"mutations":{"nuc":["T2C","A6739G","G6744A","C22326T","G27916T"],"ORF1a":["C2160Y"],"ORF8":["G8V"],"S":["S255F"]},"labels":{"aa":"ORF1a: C2160Y; ORF8: G8V; S: S255F","spike_mutations":"S255F"}}},{"name":"GJ.1.2.7","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"GJ.1.2.7"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.078390119148375}},"branch_attrs":{"mutations":{"nuc":["T6511C","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"NODE_0000468","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.2.3.3.1.2"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GJ.1.2"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-3.819866119975667}},"branch_attrs":{"mutations":{"nuc":["T16456C"],"ORF1b":["S997P"]},"labels":{"aa":"ORF1b: S997P"}},"children":[{"name":"GJ.1.2.3","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"GJ.1.2.3"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.685752845385028}},"branch_attrs":{"mutations":{"nuc":["C21789T","C28344T"],"N":["T24I"],"S":["T76I"]},"labels":{"aa":"N: T24I; S: T76I","spike_mutations":"T76I"}}},{"name":"GJ.1.2.5","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"GJ.1.2.5"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9534704056333085}},"branch_attrs":{"mutations":{"nuc":["A24062G","G27047A"],"S":["I834V"]},"labels":{"aa":"S: I834V","spike_mutations":"I834V"}}},{"name":"GJ.1.2.6","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"GJ.1.2.6"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8376884056027425}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_18110768","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.2.3.3.1.2.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"GJ.1.2.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.235562846812117}},"branch_attrs":{"mutations":{"nuc":["A22910G"],"S":["N450D"]},"labels":{"aa":"S: N450D","spike_mutations":"N450D"}},"children":[{"name":"GJ.1.2.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0074920465087"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.89912"},"designation_date":{"value":"2023-08-04"},"Nextclade_pango":{"value":"GJ.1.2.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.235562846812117}},"branch_attrs":{"mutations":{}}},{"name":"internal_2e22628a","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.2.3.3.1.2.1.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"JE.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.170615832210797}},"branch_attrs":{"mutations":{"nuc":["C14805T","A22995G","C25521T","C26885T"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"JE.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0097897931786497"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.75251"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"JE.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.170615832210797}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000471","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.2.3.3.1.2.1.1.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"JE.1.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.495390734584255}},"branch_attrs":{"mutations":{"nuc":["A21717G"],"S":["Q52R"]},"labels":{"aa":"S: Q52R","spike_mutations":"Q52R"}},"children":[{"name":"JE.1.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0097897931786497"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.75251"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"JE.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.495390734584255}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000472","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.2.3.3.1.2.1.1.1.1"},"clade_membership":{"value":"23E"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23E (XBB.2.3)"},"Nextclade_pango":{"value":"JE.1.1.1"},"clade_nextstrain":{"value":"23E"},"placement_prior":{"value":-5.097569999179824}},"branch_attrs":{"mutations":{"nuc":["T24927C"],"S":["V1122A"]},"labels":{"aa":"S: V1122A","spike_mutations":"V1122A"}},"children":[{"name":"JE.1.1.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0097897931786497"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.75251"},"designation_date":{"value":"2023-12-20"},"Nextclade_pango":{"value":"JE.1.1.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.097569999179824}},"branch_attrs":{"mutations":{}}},{"name":"KH.1","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0097897931786497"},"partiallyAliased":{"value":"XBB.2.3.3.1.2.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23E"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23E (XBB.2.3)"},"ace2_binding":{"value":"0.75251"},"designation_date":{"value":"2023-12-20"},"Nextclade_pango":{"value":"KH.1"},"clade_nextstrain":{"value":"23E"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":6.25},"placement_prior":{"value":-5.253141442906856}},"branch_attrs":{"mutations":{"nuc":["G670T","G12274A","G23222A","G27604T","C28310T"],"N":["L13F"],"ORF1a":["R135S"],"ORF7a":["V71L"],"S":["E554K"]},"labels":{"aa":"N: L13F; ORF1a: R135S; ORF7a: V71L; S: E554K","spike_mutations":"E554K"}}}]}]}]}]}]}]}]}]}]}]}]},{"name":"internal_XBB1_out","node_attrs":{"div":27,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.061818756813194}},"branch_attrs":{"mutations":{"nuc":["G22317T"],"S":["G252V"]},"labels":{"aa":"S: G252V","spike_mutations":"G252V"}},"children":[{"name":"XBB.1","node_attrs":{"div":27,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-10-03"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.061818756813194}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.1.10","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9206657740988851"},"partiallyAliased":{"value":"XBB.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.13558"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"XBB.1.10"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.092585908761723}},"branch_attrs":{"mutations":{"nuc":["C64T","C11653T","C21575T","G22770A","C24117T","C29580T"],"S":["L5F","R403K","A852V"]},"labels":{"aa":"S: L5F, R403K, A852V","spike_mutations":"L5F, R403K, A852V"}}},{"name":"XBB.1.3","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9832694599507916"},"partiallyAliased":{"value":"XBB.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.49564"},"designation_date":{"value":"2022-10-23"},"Nextclade_pango":{"value":"XBB.1.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.20134300967681}},"branch_attrs":{"mutations":{"nuc":["C7124T","G23012A"],"ORF1a":["P2287S"],"S":["A484T"]},"labels":{"aa":"ORF1a: P2287S; S: A484T","spike_mutations":"A484T"}}},{"name":"NODE_0000474","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.335597070543147}},"branch_attrs":{"mutations":{"nuc":["C16648A","T23018C","A27965G"],"ORF1b":["L1061I"],"S":["S486P"]},"labels":{"aa":"ORF1b: L1061I; S: S486P","spike_mutations":"S486P"}},"children":[{"name":"XBB.1.33","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0545"},"designation_date":{"value":"2023-04-18"},"Nextclade_pango":{"value":"XBB.1.33"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.468418615841227}},"branch_attrs":{"mutations":{"nuc":["G149C","G515-","T516-","T517-","A518-","T519-","G520-","C5259T","A7722C","C18555T","T21201C","G22688A","A24452G","C27619T","G28109T"],"ORF1a":["V84-","M85-","T1665I","Q2486P"],"ORF7a":["Q76*"],"ORF8":["Q72H"],"S":["A376T","K964E"]},"labels":{"aa":"ORF1a: V84-, M85-, T1665I, Q2486P; ORF7a: Q76*; ORF8: Q72H; S: A376T, K964E","spike_mutations":"A376T, K964E"}}},{"name":"XBB.1.49","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.49"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8940499999999999"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"XBB.1.49"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.199520607523209}},"branch_attrs":{"mutations":{"nuc":["C635T","C9073T","A22598T"],"ORF1a":["R124C"],"S":["T346S"]},"labels":{"aa":"ORF1a: R124C; S: T346S","spike_mutations":"T346S"}}}]},{"name":"internal_XBB_1_541T","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.4860749566970455}},"branch_attrs":{"mutations":{"nuc":["C541T"]}},"children":[{"name":"XBB.1.20","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.20"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731550864998583}},"branch_attrs":{"mutations":{"nuc":["C3130T","C13199A","T20175C","C25607T"],"ORF1a":["P4312T"],"ORF3a":["A72V"]},"labels":{"aa":"ORF1a: P4312T; ORF3a: A72V"}}},{"name":"XBB.1.48","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.48"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-0.9722600000000003"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.48"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.170927022218729}},"branch_attrs":{"mutations":{"nuc":["T44C","C2509T","G22927T","T22928C","T27531C"],"S":["L455F","F456L"]},"labels":{"aa":"S: L455F, F456L","spike_mutations":"L455F, F456L"}}},{"name":"NODE_0000476","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.19"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.19"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.320704369712478}},"branch_attrs":{"mutations":{"nuc":["A10042G","T21363C","T23018C","G29810T"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"XBB.1.19","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.19"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":64},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.320704369712478}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.19.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.1.19.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"XBB.1.19.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254463082105614}},"branch_attrs":{"mutations":{"nuc":["C6471T","C7420T","C23123T","C28603T","G29254A"],"ORF1a":["T2069I"],"S":["P521S"]},"labels":{"aa":"ORF1a: T2069I; S: P521S","spike_mutations":"P521S"}}},{"name":"NODE_0000477","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.19.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.19.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.667820726891448}},"branch_attrs":{"mutations":{"nuc":["T44C","G23222A"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}},"children":[{"name":"GW.2","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.19.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-26"},"Nextclade_pango":{"value":"GW.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.1295479419418335}},"branch_attrs":{"mutations":{"nuc":["C5178T","C6401T","T8662C","T15300C","A24369G","G25641A"],"ORF1a":["T1638I","P2046S"],"S":["D936G"]},"labels":{"aa":"ORF1a: T1638I, P2046S; S: D936G","spike_mutations":"D936G"}}},{"name":"GW.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.19.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"GW.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.488478876789633}},"branch_attrs":{"mutations":{"nuc":["G564A","A10875G"],"ORF1a":["S100N","N3537S"]},"labels":{"aa":"ORF1a: S100N, N3537S"}}},{"name":"GW.4","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.19.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"GW.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.292243062787591}},"branch_attrs":{"mutations":{"nuc":["G10105T"],"ORF1a":["M3280I"]},"labels":{"aa":"ORF1a: M3280I"}}},{"name":"XBB.1.19.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.19.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.19.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.667820726891448}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000478","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.19.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GW.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.106137643119211}},"branch_attrs":{"mutations":{"nuc":["G1055A","C10186T","G10465A","C15960T","C20823T","C28519T","A29237G"],"N":["M322V"],"ORF1a":["D264N"],"ORF9b":["T79I"]},"labels":{"aa":"N: M322V; ORF1a: D264N; ORF9b: T79I"}},"children":[{"name":"GW.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.19.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-26"},"Nextclade_pango":{"value":"GW.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.106137643119211}},"branch_attrs":{"mutations":{}}},{"name":"GW.1.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.19.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"GW.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3848912440720405}},"branch_attrs":{"mutations":{"nuc":["A21137G","T22928C"],"ORF1b":["K2557R"],"S":["F456L"]},"labels":{"aa":"ORF1b: K2557R; S: F456L","spike_mutations":"F456L"}}}]},{"name":"NODE_0000479","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.19.1.5"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GW.5"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.606644091185654}},"branch_attrs":{"mutations":{"nuc":["C44T","C1170T","C6501A","C12473T","C12924T","G22927T","T22928C","A22995T","C24034T","T24046C","C28511T","T28723C"],"N":["P80S"],"ORF1a":["S302F","P2079Q","P4220L"],"S":["L455F","F456L","K478I"]},"labels":{"aa":"N: P80S; ORF1a: S302F, P2079Q, P4220L; S: L455F, F456L, K478I","spike_mutations":"L455F, F456L, K478I"}},"children":[{"name":"GW.5","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.19.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-0.42535999999999996"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"GW.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606644091185654}},"branch_attrs":{"mutations":{}}},{"name":"GW.5.2","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.19.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-0.42535999999999996"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GW.5.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.30566204412585}},"branch_attrs":{"mutations":{"nuc":["G9190A","C29409T"],"N":["T379I"]},"labels":{"aa":"N: T379I"}}},{"name":"NODE_0000480","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.1.19.1.5.3"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GW.5.3"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.270903626440086}},"branch_attrs":{"mutations":{"nuc":["T20310C","C28519T"],"ORF9b":["T79I"]},"labels":{"aa":"ORF9b: T79I"}},"children":[{"name":"GW.5.3","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.19.1.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-0.42535999999999996"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GW.5.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.270903626440086}},"branch_attrs":{"mutations":{}}},{"name":"GW.5.3.1","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XBB.1.19.1.5.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-1.1446900000000002"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GW.5.3.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.013823381800304}},"branch_attrs":{"mutations":{"nuc":["A2345G","C20806T","G22113C","C22986T"],"ORF1a":["I694V"],"S":["G184A","A475V"]},"labels":{"aa":"ORF1a: I694V; S: G184A, A475V","spike_mutations":"G184A, A475V"}}}]},{"name":"NODE_0000481","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.1.19.1.5.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GW.5.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.5098299806803395}},"branch_attrs":{"mutations":{"nuc":["G25839T","A28768G"],"ORF3a":["W149C"]},"labels":{"aa":"ORF3a: W149C"}},"children":[{"name":"GW.5.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.19.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-0.42535999999999996"},"designation_date":{"value":"2023-09-11"},"Nextclade_pango":{"value":"GW.5.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.5098299806803395}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000482","node_attrs":{"div":54,"partiallyAliased":{"value":"XBB.1.19.1.5.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GW.5.1.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.3958866283735025}},"branch_attrs":{"mutations":{"nuc":["C450T","T21798C","C22986T","G25906T","T27383A","C27384T"],"ORF1a":["P62L"],"ORF3a":["G172C"],"ORF6":["L61H"],"S":["F79S","A475V"]},"labels":{"aa":"ORF1a: P62L; ORF3a: G172C; ORF6: L61H; S: F79S, A475V","spike_mutations":"F79S, A475V"}},"children":[{"name":"GW.5.1.1","node_attrs":{"div":54,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XBB.1.19.1.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-1.1446900000000002"},"designation_date":{"value":"2023-09-11"},"Nextclade_pango":{"value":"GW.5.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3958866283735025}},"branch_attrs":{"mutations":{}}},{"name":"KE.1","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XBB.1.19.1.5.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-1.1446900000000002"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"KE.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["C18060T","T22119C","C25665T","T27395A","C27431T"],"ORF7a":["M1K","A13V"],"S":["F186S"]},"labels":{"aa":"ORF7a: M1K, A13V; S: F186S","spike_mutations":"F186S"}}},{"name":"KE.2","node_attrs":{"div":59,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XBB.1.19.1.5.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-1.1446900000000002"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"KE.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-10}},"branch_attrs":{"mutations":{"nuc":["C8016T","C12781T","T15252G","C23673T","C29762T"],"ORF1a":["A2584V"],"S":["S704L"]},"labels":{"aa":"ORF1a: A2584V; S: S704L","spike_mutations":"S704L"}}},{"name":"KE.3","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XBB.1.19.1.5.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-1.1446900000000002"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"KE.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.79382663704554}},"branch_attrs":{"mutations":{"nuc":["T11187C","C15656T"],"ORF1a":["L3641S"],"ORF1b":["T730I"]},"labels":{"aa":"ORF1a: L3641S; ORF1b: T730I"}}}]}]}]}]}]}]},{"name":"NODE_0000483","node_attrs":{"div":28,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-3.1036186449361614}},"branch_attrs":{"mutations":{"nuc":["G27915T"],"ORF8":["G8*"]},"labels":{"aa":"ORF8: G8*"}},"children":[{"name":"XBB.1.21","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.86729"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.21"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36362174907267}},"branch_attrs":{"mutations":{"nuc":["A4005G","C6196A","C6388T","A20262G","T23018G","-29759G"],"ORF1a":["K1247R"],"S":["S486A"]},"labels":{"aa":"ORF1a: K1247R; S: S486A","spike_mutations":"S486A"}}},{"name":"XBB.1.27","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.2602599999999999"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.27"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["C9803T","C11956T","A13703T","T14211C","A22995G","C24231T"],"ORF1b":["N79I"],"S":["K478R","A890V"]},"labels":{"aa":"ORF1b: N79I; S: K478R, A890V","spike_mutations":"K478R, A890V"}}},{"name":"XBB.1.29","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.29"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.325949610125973}},"branch_attrs":{"mutations":{"nuc":["G11114T","C11750T","G22436T"],"ORF1a":["G3617C","L3829F"],"S":["A292S"]},"labels":{"aa":"ORF1a: G3617C, L3829F; S: A292S","spike_mutations":"A292S"}}},{"name":"XBB.1.36","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18493000000000007"},"designation_date":{"value":"2023-04-24"},"Nextclade_pango":{"value":"XBB.1.36"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.303055259095804}},"branch_attrs":{"mutations":{"nuc":["C4999T","A14427G","T23030C"],"S":["S490P"]},"labels":{"aa":"S: S490P","spike_mutations":"S490P"}}},{"name":"XBB.1.40","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9183287542025276"},"partiallyAliased":{"value":"XBB.1.40"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.6875"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.40"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["C1648T","G1820A","C8090T","C16650T","A22920T","C25162T","C25702T","T26819C"],"ORF1a":["G519S","L2609F"],"ORF3a":["P104S"],"S":["Y453F"]},"labels":{"aa":"ORF1a: G519S, L2609F; ORF3a: P104S; S: Y453F","spike_mutations":"Y453F"}}},{"name":"XBB.1.6","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-12-16"},"Nextclade_pango":{"value":"XBB.1.6"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.975136622244544}},"branch_attrs":{"mutations":{"nuc":["G2883T","T7825A","C21998A","C22208T"],"ORF1a":["C873F","H2520Q"],"S":["Q146K","L216F"]},"labels":{"aa":"ORF1a: C873F, H2520Q; S: Q146K, L216F","spike_mutations":"Q146K, L216F"}}},{"name":"XBB.1.7","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-12-22"},"Nextclade_pango":{"value":"XBB.1.7"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.731058826639945}},"branch_attrs":{"mutations":{"nuc":["T44C","G3418T","G23384A","-29759G"],"ORF1a":["K1051N"],"S":["V608I"]},"labels":{"aa":"ORF1a: K1051N; S: V608I","spike_mutations":"V608I"}}},{"name":"XBB.1.8","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-01-07"},"Nextclade_pango":{"value":"XBB.1.8"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.253833668867664}},"branch_attrs":{"mutations":{"nuc":["T44C","C3241T"]}}},{"name":"NODE_0000484","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.12"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.12"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.730128652816316}},"branch_attrs":{"mutations":{"nuc":["C912T","C8760T","C11956T","T14217A","G14218A","A15367G","A22920T"],"ORF1a":["S216F","A2832V"],"ORF1b":["D251N","T634A"],"S":["Y453F"]},"labels":{"aa":"ORF1a: S216F, A2832V; ORF1b: D251N, T634A; S: Y453F","spike_mutations":"Y453F"}},"children":[{"name":"XBB.1.12","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9183287542025276"},"partiallyAliased":{"value":"XBB.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.6875"},"designation_date":{"value":"2023-02-09"},"Nextclade_pango":{"value":"XBB.1.12"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.730128652816316}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.12.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9183287542025276"},"partiallyAliased":{"value":"XBB.1.12.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.6875"},"designation_date":{"value":"2023-07-17"},"Nextclade_pango":{"value":"XBB.1.12.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["C2106T","C5512T","G23401T","G25166C"],"ORF1a":["T614I"],"S":["Q613H","E1202Q"]},"labels":{"aa":"ORF1a: T614I; S: Q613H, E1202Q","spike_mutations":"Q613H, E1202Q"}}}]},{"name":"internal_32defdcb","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1.13"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.13"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.746909162009187}},"branch_attrs":{"mutations":{"nuc":["T23030C"],"S":["S490P"]},"labels":{"aa":"S: S490P","spike_mutations":"S490P"}},"children":[{"name":"XBB.1.13","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18493000000000007"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.13"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.746909162009187}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.13.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18493000000000007"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.13.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.50979442794143}},"branch_attrs":{"mutations":{"nuc":["A6821G","C23252G","C24130G","C26996T","C28732T"],"ORF1a":["T2186A"],"S":["Q564E","N856K"]},"labels":{"aa":"ORF1a: T2186A; S: Q564E, N856K","spike_mutations":"Q564E, N856K"}}}]},{"name":"NODE_0000486","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.14"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.14"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["G5515T","C15810T","G21786T","G23222A"],"S":["G75V","E554K"]},"labels":{"aa":"S: G75V, E554K","spike_mutations":"G75V, E554K"}},"children":[{"name":"XBB.1.14","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.14"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.14.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.14.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.14.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094813448445842}},"branch_attrs":{"mutations":{"nuc":["A15483G","A22005C","G28904T"],"N":["A211S"],"S":["N148T"]},"labels":{"aa":"N: A211S; S: N148T","spike_mutations":"N148T"}}}]},{"name":"internal_7bf43f6c","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1.15"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.15"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-3.793412375589291}},"branch_attrs":{"mutations":{"nuc":["C1884T"],"ORF1a":["A540V"]},"labels":{"aa":"ORF1a: A540V"}},"children":[{"name":"XBB.1.15","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBB.1.15"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.793412375589291}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.15.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.15.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.902027334931337}},"branch_attrs":{"mutations":{"nuc":["C9803T","A19464G","T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}}}]},{"name":"internal_8d12","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1.37"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.37"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.222497737397153}},"branch_attrs":{"mutations":{"nuc":["A5371G"]}},"children":[{"name":"XBB.1.37","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.37"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.222497737397153}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.1.37.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.37.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.37.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.596002435260295}},"branch_attrs":{"mutations":{"nuc":["A1846G","G7459T","T23018C","T27285C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}}}]},{"name":"internal_234859ae","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1.38"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.38"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.893122733242529}},"branch_attrs":{"mutations":{"nuc":["C23757T"],"S":["T732I"]},"labels":{"aa":"S: T732I","spike_mutations":"T732I"}},"children":[{"name":"XBB.1.38","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.38"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.893122733242529}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.38.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.38.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.38.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.963400204104764}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}}]},{"name":"internal_97a057d5","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.43"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.43"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.507377791327893}},"branch_attrs":{"mutations":{"nuc":["T44C","G11071A"]}},"children":[{"name":"XBB.1.43","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.43"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-05-31"},"Nextclade_pango":{"value":"XBB.1.43"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.507377791327893}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.1.43.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.43.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-31"},"Nextclade_pango":{"value":"XBB.1.43.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847047739974282}},"branch_attrs":{"mutations":{"nuc":["C8127T","A20713C","T23018C"],"ORF1a":["A2621V"],"S":["S486P"]},"labels":{"aa":"ORF1a: A2621V; S: S486P","spike_mutations":"S486P"}}}]},{"name":"internal_fcda1063","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.44"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.44"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.444641711759851}},"branch_attrs":{"mutations":{"nuc":["C21306T","C23802T"],"S":["T747I"]},"labels":{"aa":"S: T747I","spike_mutations":"T747I"}},"children":[{"name":"XBB.1.44","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.44"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.44"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.444641711759851}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.44.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.44.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.44.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.194505218008978}},"branch_attrs":{"mutations":{"nuc":["C1884T","G4720T","T23018C","C25976T"],"ORF1a":["A540V"],"ORF3a":["S195F"],"S":["S486P"]},"labels":{"aa":"ORF1a: A540V; ORF3a: S195F; S: S486P","spike_mutations":"S486P"}}}]},{"name":"internal_8f782cea","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1.45"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.45"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.143833795323088}},"branch_attrs":{"mutations":{"nuc":["T21000C"]}},"children":[{"name":"XBB.1.45","node_attrs":{"div":29,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.45"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.45"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.143833795323088}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.45.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.45.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.45.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828565351295565}},"branch_attrs":{"mutations":{"nuc":["A3139G","A19137G","T23018C","C28291T"],"ORF9b":["P3L"],"S":["S486P"]},"labels":{"aa":"ORF9b: P3L; S: S486P","spike_mutations":"S486P"}}}]},{"name":"NODE_0000493","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.31"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.31"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.466921431917165}},"branch_attrs":{"mutations":{"nuc":["C1191T","G6961T","A14319G","A22920T","A22995G"],"ORF1a":["P309L","W2232C"],"S":["Y453F","K478R"]},"labels":{"aa":"ORF1a: P309L, W2232C; S: Y453F, K478R","spike_mutations":"Y453F, K478R"}},"children":[{"name":"XBB.1.31","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9203893783704078"},"partiallyAliased":{"value":"XBB.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.54089"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"XBB.1.31"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.466921431917165}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.31.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9203893783704078"},"partiallyAliased":{"value":"XBB.1.31.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.54089"},"designation_date":{"value":"2023-06-29"},"Nextclade_pango":{"value":"XBB.1.31.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363701945002102}},"branch_attrs":{"mutations":{"nuc":["T44C","C3743T","C3832T","G11029T","G23222A","G25981T"],"ORF1a":["H1160Y","L3588F"],"ORF3a":["V197L"],"S":["E554K"]},"labels":{"aa":"ORF1a: H1160Y, L3588F; ORF3a: V197L; S: E554K","spike_mutations":"E554K"}}},{"name":"XBB.1.31.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9203893783704078"},"partiallyAliased":{"value":"XBB.1.31.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.54089"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"XBB.1.31.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305709998024415}},"branch_attrs":{"mutations":{"nuc":["C3411T"],"ORF1a":["A1049V"]},"labels":{"aa":"ORF1a: A1049V"}}}]},{"name":"internal_d9591069","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.4"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.4"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.789562625340711}},"branch_attrs":{"mutations":{"nuc":["C24210T","T26160C","-29759G"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}},"children":[{"name":"XBB.1.4","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-11-06"},"Nextclade_pango":{"value":"XBB.1.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.789562625340711}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.4.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-11-25"},"Nextclade_pango":{"value":"XBB.1.4.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.01280753409706}},"branch_attrs":{"mutations":{"nuc":["G2164A","A23579G","G29759-"],"S":["S673G"]},"labels":{"aa":"S: S673G","spike_mutations":"S673G"}}},{"name":"XBB.1.4.2","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.4.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.907741919092542}},"branch_attrs":{"mutations":{"nuc":["T44C","C346T","C7639T","G11048T","A20553G","T23018C"],"ORF1a":["V3595F"],"S":["S486P"]},"labels":{"aa":"ORF1a: V3595F; S: S486P","spike_mutations":"S486P"}}}]},{"name":"internal_72cf675c","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.34"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.34"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["C9430T","G16741A","C19017T","C19524T","T23018C","A23604G","C27884T","C28422T"],"N":["A50V"],"ORF1b":["V1092I"],"ORF9b":["R47C"],"S":["S486P","H681R"]},"labels":{"aa":"N: A50V; ORF1b: V1092I; ORF9b: R47C; S: S486P, H681R","spike_mutations":"S486P, H681R"}},"children":[{"name":"XBB.1.34","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-20"},"Nextclade_pango":{"value":"XBB.1.34"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.1.34.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.34.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-06"},"Nextclade_pango":{"value":"XBB.1.34.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129571956210234}},"branch_attrs":{"mutations":{"nuc":["C16376T","G23222A"],"ORF1b":["P970L"],"S":["E554K"]},"labels":{"aa":"ORF1b: P970L; S: E554K","spike_mutations":"E554K"}}},{"name":"internal_5dcf3700","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.34.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.34.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.8727488418983045}},"branch_attrs":{"mutations":{"nuc":["G3230T","A22107T","G28162T"],"ORF1a":["G989C"],"ORF8":["C90F"],"S":["K182I"]},"labels":{"aa":"ORF1a: G989C; ORF8: C90F; S: K182I","spike_mutations":"K182I"}},"children":[{"name":"HB.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.34.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"HB.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.539672915716258}},"branch_attrs":{"mutations":{"nuc":["C21998A","T22928C"],"S":["Q146K","F456L"]},"labels":{"aa":"S: Q146K, F456L","spike_mutations":"Q146K, F456L"}}},{"name":"XBB.1.34.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.34.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-06"},"Nextclade_pango":{"value":"XBB.1.34.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.8727488418983045}},"branch_attrs":{"mutations":{}}}]}]},{"name":"NODE_0000497","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-3.954980995326648}},"branch_attrs":{"mutations":{"nuc":["T13704C"]}},"children":[{"name":"XBB.1.30","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.30"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.843582735894145}},"branch_attrs":{"mutations":{"nuc":["A21137G"],"ORF1b":["K2557R"]},"labels":{"aa":"ORF1b: K2557R"}}},{"name":"XBB.1.39","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.39"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.39"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.046155717423904}},"branch_attrs":{"mutations":{"nuc":["G8861A"],"ORF1a":["V2866M"]},"labels":{"aa":"ORF1a: V2866M"}}},{"name":"internal_18e1f6df","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.32"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.32"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.112692009621404}},"branch_attrs":{"mutations":{"nuc":["G709T"],"ORF1a":["E148D"]},"labels":{"aa":"ORF1a: E148D"}},"children":[{"name":"XBB.1.32","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"XBB.1.32"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.112692009621404}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.32.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9183287542025276"},"partiallyAliased":{"value":"XBB.1.32.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.6875"},"designation_date":{"value":"2023-05-08"},"Nextclade_pango":{"value":"XBB.1.32.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["T44C","C2189T","T3676C","C6627T","T14865C","C20956A","A22920T","G27541T"],"ORF1a":["L642F","T2121I"],"ORF1b":["L2497I"],"ORF7a":["A50S"],"S":["Y453F"]},"labels":{"aa":"ORF1a: L642F, T2121I; ORF1b: L2497I; ORF7a: A50S; S: Y453F","spike_mutations":"Y453F"}}}]}]},{"name":"internal_2d8f9114","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1.28"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.28"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.537398019800631}},"branch_attrs":{"mutations":{"nuc":["G22770A"],"S":["R403K"]},"labels":{"aa":"S: R403K","spike_mutations":"R403K"}},"children":[{"name":"XBB.1.28","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9247862507081752"},"partiallyAliased":{"value":"XBB.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.05231"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.28"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.864963466117952}},"branch_attrs":{"mutations":{"nuc":["T5263C","G20102T","T22566C"],"ORF1b":["S2212I"],"S":["L335S"]},"labels":{"aa":"ORF1b: S2212I; S: L335S","spike_mutations":"L335S"}}},{"name":"NODE_0000500","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.28.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.28.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.824091122157849}},"branch_attrs":{"mutations":{"nuc":["A22629C"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}},"children":[{"name":"FW.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"1.1913424636502212"},"partiallyAliased":{"value":"XBB.1.28.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.13254"},"designation_date":{"value":"2023-05-01"},"Nextclade_pango":{"value":"FW.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.195639846678648}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","G7037T"],"ORF1a":["G82-","H83-","V84-","M85V","G2258C"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85V, G2258C"}}},{"name":"FW.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1913424636502212"},"partiallyAliased":{"value":"XBB.1.28.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.13254"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FW.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430648734632714}},"branch_attrs":{"mutations":{"nuc":["C8140T","T8141C","G8144A","A29320G"],"ORF1a":["D2627N"]},"labels":{"aa":"ORF1a: D2627N"}}},{"name":"XBB.1.28.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1913424636502212"},"partiallyAliased":{"value":"XBB.1.28.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.13254"},"designation_date":{"value":"2023-04-07"},"Nextclade_pango":{"value":"XBB.1.28.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.824091122157849}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000501","node_attrs":{"div":31,"partiallyAliased":{"value":"XBB.1.28.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FW.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.348486835591284}},"branch_attrs":{"mutations":{"nuc":["G515-","T516-","T517-","A518-","T519-","G520-","C23664T","T27205-"],"ORF1a":["V84-","M85-"],"ORF6":["F2-"],"S":["A701V"]},"labels":{"aa":"ORF1a: V84-, M85-; ORF6: F2-; S: A701V","spike_mutations":"A701V"}},"children":[{"name":"FW.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"1.1913424636502212"},"partiallyAliased":{"value":"XBB.1.28.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.13254"},"designation_date":{"value":"2023-05-01"},"Nextclade_pango":{"value":"FW.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"frameShifts":{"value":"ORF6:3-62"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.348486835591284}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000502","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.28.1.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FW.1.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.319425846829834}},"branch_attrs":{"mutations":{"nuc":["T1978C","G2778A","G13118A","A17809C","A22005C","G27754T"],"ORF1a":["S838N","A4285T"],"ORF1b":["I1448L"],"ORF7a":["E121*"],"S":["N148T"]},"labels":{"aa":"ORF1a: S838N, A4285T; ORF1b: I1448L; ORF7a: E121*; S: N148T","spike_mutations":"N148T"}},"children":[{"name":"FW.1.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"1.1913424636502212"},"partiallyAliased":{"value":"XBB.1.28.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.13254"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"FW.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"frameShifts":{"value":"ORF6:3-62"},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.319425846829834}},"branch_attrs":{"mutations":{}}},{"name":"FW.1.1.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"1.1913424636502212"},"partiallyAliased":{"value":"XBB.1.28.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.13254"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"FW.1.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":25},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["C7119T","C9442T","A10323G","T13728C","G23612A","-27205T","T27383A","C27384T"],"ORF1a":["S2285F","K3353R"],"ORF6":["-2F","L61H"],"S":["A684T"]},"labels":{"aa":"ORF1a: S2285F, K3353R; ORF6: -2F, L61H; S: A684T","spike_mutations":"A684T"}}}]}]}]}]},{"name":"internal_0403","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.11"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.11"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.115777953623186}},"branch_attrs":{"mutations":{"nuc":["C13968A","G16377A"]}},"children":[{"name":"XBB.1.11","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-01-31"},"Nextclade_pango":{"value":"XBB.1.11"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.115777953623186}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"internal_df4002f6","node_attrs":{"div":31,"partiallyAliased":{"value":"XBB.1.11.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.11.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.727559045810308}},"branch_attrs":{"mutations":{"nuc":["T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"FP.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":15},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.11.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-11"},"Nextclade_pango":{"value":"FP.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.599191781824942}},"branch_attrs":{"mutations":{"nuc":["C6312T","A6616G","-21633T","-21634A","C21642-","A21643-","T21765-","A21766-","C21767-","A21768-","T21769-","G21770-"],"ORF1a":["T2016I"],"S":["-24L","S27-","H69-","V70-"]},"labels":{"aa":"ORF1a: T2016I; S: -24L, S27-, H69-, V70-","spike_mutations":"-24L, S27-, H69-, V70-"}}},{"name":"FP.3","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.11.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"FP.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.152118057559268}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"FP.4","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.11.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"FP.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.529208946148403}},"branch_attrs":{"mutations":{"nuc":["C2536T","C3241T"]}}},{"name":"XBB.1.11.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-01-31"},"Nextclade_pango":{"value":"XBB.1.11.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.727559045810308}},"branch_attrs":{"mutations":{}}},{"name":"internal_c73e70db","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.11.1.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FP.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.647203755724471}},"branch_attrs":{"mutations":{"nuc":["G9497A","T22119C"],"ORF1a":["V3078I"],"S":["F186S"]},"labels":{"aa":"ORF1a: V3078I; S: F186S","spike_mutations":"F186S"}},"children":[{"name":"FP.2","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.11.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"FP.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.647203755724471}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000506","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.11.1.2.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FP.2.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.509717710525144}},"branch_attrs":{"mutations":{"nuc":["G2281A","T2343C","A3116G","A22995G","G25839T"],"ORF1a":["I693T","T951A"],"ORF3a":["W149C"],"S":["K478R"]},"labels":{"aa":"ORF1a: I693T, T951A; ORF3a: W149C; S: K478R","spike_mutations":"K478R"}},"children":[{"name":"FP.2.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.11.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"FP.2.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509717710525144}},"branch_attrs":{"mutations":{"nuc":["T44C"]}}},{"name":"NODE_0000507","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.11.1.2.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FP.2.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["T15357C"]}},"children":[{"name":"FP.2.1.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0230547715545306"},"partiallyAliased":{"value":"XBB.1.11.1.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.7388600000000002"},"designation_date":{"value":"2023-07-28"},"Nextclade_pango":{"value":"FP.2.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["T22917A"],"S":["L452Q"]},"labels":{"aa":"S: L452Q","spike_mutations":"L452Q"}}},{"name":"FP.2.1.2","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.11.1.2.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-07-28"},"Nextclade_pango":{"value":"FP.2.1.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["T693A","C23123T"],"ORF1a":["F143Y"],"S":["P521S"]},"labels":{"aa":"ORF1a: F143Y; S: P521S","spike_mutations":"P521S"}}}]}]}]}]}]},{"name":"internal_T13704C","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-3.954980995326648}},"branch_attrs":{"mutations":{"nuc":["T13704C"]}},"children":[{"name":"XBB.1.1","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-10-15"},"Nextclade_pango":{"value":"XBB.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.075611183512465}},"branch_attrs":{"mutations":{"nuc":["C1191T"],"ORF1a":["P309L"]},"labels":{"aa":"ORF1a: P309L"}}},{"name":"XBB.1.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2022-10-17"},"Nextclade_pango":{"value":"XBB.1.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-9.097293832704947}},"branch_attrs":{"mutations":{"nuc":["C16111T","C23481T"],"S":["S640F"]},"labels":{"aa":"S: S640F","spike_mutations":"S640F"}}},{"name":"XBB.1.35","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-04-23"},"Nextclade_pango":{"value":"XBB.1.35"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.2371726946873345}},"branch_attrs":{"mutations":{"nuc":["T531C","C3811T"],"ORF1a":["V89A"]},"labels":{"aa":"ORF1a: V89A"}}},{"name":"XBB.1.46","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.46"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.46"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.997757593593191}},"branch_attrs":{"mutations":{"nuc":["G3606T"],"ORF1a":["C1114F"]},"labels":{"aa":"ORF1a: C1114F"}}},{"name":"internal_2a4b7258","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.47"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.47"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.204166252031025}},"branch_attrs":{"mutations":{"nuc":["T2803C","C5547T","G6804A","A8825G","C27945T"],"ORF1a":["T1761I","C2180Y","I2854V"],"ORF8":["Q18*"]},"labels":{"aa":"ORF1a: T1761I, C2180Y, I2854V; ORF8: Q18*"}},"children":[{"name":"XBB.1.47","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.47"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.47"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.204166252031025}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.47.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.47.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"XBB.1.47.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.204166252031025}},"branch_attrs":{"mutations":{"nuc":["G2272T","C4582T","C22341T","T23018C","T24927G"],"ORF1a":["K669N"],"S":["A260V","S486P","V1122G"]},"labels":{"aa":"ORF1a: K669N; S: A260V, S486P, V1122G","spike_mutations":"A260V, S486P, V1122G"}}}]},{"name":"NODE_0000510","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.24"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.24"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.230311149954566}},"branch_attrs":{"mutations":{"nuc":["A624G","T23018C","C27297A"],"ORF1a":["K120R"],"S":["S486P"]},"labels":{"aa":"ORF1a: K120R; S: S486P","spike_mutations":"S486P"}},"children":[{"name":"XBB.1.24","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-20"},"Nextclade_pango":{"value":"XBB.1.24"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.230311149954566}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.24.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9209379558325088"},"partiallyAliased":{"value":"XBB.1.24.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.05408"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.24.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7557696885072565}},"branch_attrs":{"mutations":{"nuc":["T23115A"],"S":["L518Q"]},"labels":{"aa":"S: L518Q","spike_mutations":"L518Q"}}},{"name":"NODE_0000511","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.24"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.24"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.199976977626905}},"branch_attrs":{"mutations":{"nuc":["G1048T"],"ORF1a":["K261N"]},"labels":{"aa":"ORF1a: K261N"}},"children":[{"name":"XBB.1.24.2","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.24.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.24.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["T15750C","A22036C","G28376A"],"N":["A35T"],"S":["R158S"]},"labels":{"aa":"N: A35T; S: R158S","spike_mutations":"R158S"}}},{"name":"XBB.1.24.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.24.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.24.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.4291657295098394}},"branch_attrs":{"mutations":{"nuc":["C22329T"],"S":["S256L"]},"labels":{"aa":"S: S256L","spike_mutations":"S256L"}}}]}]}]},{"name":"internal_XBB_1_18","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.18"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.18"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.809608705228521}},"branch_attrs":{"mutations":{"nuc":["T44C","A8001G"],"ORF1a":["D2579G"]},"labels":{"aa":"ORF1a: D2579G"}},"children":[{"name":"XBB.1.18","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.18"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.809608705228521}},"branch_attrs":{"mutations":{}}},{"name":"internal_29ca1a1d","node_attrs":{"div":31,"partiallyAliased":{"value":"XBB.1.18.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.18.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.296129658082846}},"branch_attrs":{"mutations":{"nuc":["T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"XBB.1.18.1","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.18.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.18.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.296129658082846}},"branch_attrs":{"mutations":{}}},{"name":"internal_44ed5a46","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.18.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FE.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.777128304782638}},"branch_attrs":{"mutations":{"nuc":["A3662G","T22928C","T26012G"],"ORF1a":["S1133G"],"ORF3a":["F207C"],"S":["F456L"]},"labels":{"aa":"ORF1a: S1133G; ORF3a: F207C; S: F456L","spike_mutations":"F456L"}},"children":[{"name":"FE.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FE.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777128304782638}},"branch_attrs":{"mutations":{}}},{"name":"FE.1.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"FE.1.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.865388845082368}},"branch_attrs":{"mutations":{"nuc":["A5488G"]}}},{"name":"internal_90d11099","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.18.1.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FE.1.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.270524029862877}},"branch_attrs":{"mutations":{"nuc":["T4579A","C28093T"],"ORF8":["S67F"]},"labels":{"aa":"ORF8: S67F"}},"children":[{"name":"FE.1.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"FE.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.270524029862877}},"branch_attrs":{"mutations":{}}},{"name":"FE.1.1.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"FE.1.1.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094813448445842}},"branch_attrs":{"mutations":{"nuc":["A3238C","C11956T","A24819G"],"ORF1a":["Q991H"],"S":["K1086R"]},"labels":{"aa":"ORF1a: Q991H; S: K1086R","spike_mutations":"K1086R"}}},{"name":"FE.1.1.3","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"FE.1.1.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129571956210234}},"branch_attrs":{"mutations":{"nuc":["C44T","A24775G"]}}},{"name":"FE.1.1.4","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"FE.1.1.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.148086686592558}},"branch_attrs":{"mutations":{"nuc":["A4336G","T24073C"]}}},{"name":"FE.1.1.5","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FE.1.1.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129571956210234}},"branch_attrs":{"mutations":{"nuc":["G23222A","A23233G"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"internal_8af9e862","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.18.1.1.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FE.1.1.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.208743846310869}},"branch_attrs":{"mutations":{"nuc":["C3261T","T3577G","C15180T"],"ORF1a":["T999I"]},"labels":{"aa":"ORF1a: T999I"}},"children":[{"name":"FE.1.1.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"FE.1.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208743846310869}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000517","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.18.1.1.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FE.1.1.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.254495099685522}},"branch_attrs":{"mutations":{"nuc":["T9445C"]}},"children":[{"name":"HE.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"HE.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.677304555836829}},"branch_attrs":{"mutations":{"nuc":["C15222T","G23426A","C28057T"],"ORF8":["A55V"],"S":["V622I"]},"labels":{"aa":"ORF8: A55V; S: V622I","spike_mutations":"V622I"}}},{"name":"HE.2","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.18.1.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"HE.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["C24734T","C25703T","T28297C"],"ORF3a":["P104L"],"ORF9b":["I5T"],"S":["H1058Y"]},"labels":{"aa":"ORF3a: P104L; ORF9b: I5T; S: H1058Y","spike_mutations":"H1058Y"}}}]}]}]}]}]}]},{"name":"NODE_0000518","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.41"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.41"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.805087038241015}},"branch_attrs":{"mutations":{"nuc":["C1473T","G20102T","T22566C","G22770A","T23018C"],"ORF1a":["T403I"],"ORF1b":["S2212I"],"S":["L335S","R403K","S486P"]},"labels":{"aa":"ORF1a: T403I; ORF1b: S2212I; S: L335S, R403K, S486P","spike_mutations":"L335S, R403K, S486P"}},"children":[{"name":"XBB.1.41","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9247862507081752"},"partiallyAliased":{"value":"XBB.1.41"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.65784"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"XBB.1.41"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.805087038241015}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.41.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9455601986845179"},"partiallyAliased":{"value":"XBB.1.41.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.6066099999999999"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"XBB.1.41.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.536690182067464}},"branch_attrs":{"mutations":{"nuc":["C9724T","G14023A","C21772T","T23042C","T28636C"],"ORF1b":["A186T"],"S":["S494P"]},"labels":{"aa":"ORF1b: A186T; S: S494P","spike_mutations":"S494P"}}},{"name":"internal_e264e3bd","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.41.3"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.41.3"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.127664725303229}},"branch_attrs":{"mutations":{"nuc":["C17850T","C25276T","C29416G"]}},"children":[{"name":"XBB.1.41.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9247862507081752"},"partiallyAliased":{"value":"XBB.1.41.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.65784"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XBB.1.41.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.127664725303229}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000520","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.41.3.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"JW.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.279171967325324}},"branch_attrs":{"mutations":{"nuc":["C1454T","C2509T","A22995G"],"ORF1a":["L397F"],"S":["K478R"]},"labels":{"aa":"ORF1a: L397F; S: K478R","spike_mutations":"K478R"}},"children":[{"name":"JW.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JW.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.279171967325324}},"branch_attrs":{"mutations":{}}},{"name":"JW.1.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"JW.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.840747018844755}},"branch_attrs":{"mutations":{"nuc":["T17065C","C21602A"],"ORF1b":["Y1200H"],"S":["Q14K"]},"labels":{"aa":"ORF1b: Y1200H; S: Q14K","spike_mutations":"Q14K"}}}]}]},{"name":"internal_4302f45b","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.41.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.41.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.608492824089693}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"XBB.1.41.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"XBB.1.41.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.608492824089693}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000522","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.41.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.41.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.00946996244787}},"branch_attrs":{"mutations":{"nuc":["C364T"]}},"children":[{"name":"JC.6","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JC.6"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.505939983578885}},"branch_attrs":{"mutations":{"nuc":["A25241G","G29841-","T29842-","G29843-","A29844-","T29845-","T29846-","T29847-","T29848-","A29849-","A29850-","T29851-","A29852-","G29853-","C29854-","T29855-","T29856-","C29857-","T29858-","T29859-","A29860-","G29861-","G29862-","A29863-"],"S":["I1227V"]},"labels":{"aa":"S: I1227V","spike_mutations":"I1227V"}}},{"name":"NODE_0000523","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.41.1.5"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"JC.5"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.753935426390034}},"branch_attrs":{"mutations":{"nuc":["T44C","C3924T","C18555T","C29171T","C29769T"],"N":["H300Y"],"ORF1a":["P1220L"]},"labels":{"aa":"N: H300Y; ORF1a: P1220L"}},"children":[{"name":"JC.5","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JC.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.753935426390034}},"branch_attrs":{"mutations":{}}},{"name":"JC.5.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"JC.5.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0.173611},"placement_prior":{"value":-5.254514849627949}},"branch_attrs":{"mutations":{"nuc":["G557A","C15660T","C22079A"],"ORF1a":["G98S"],"S":["Q173K"]},"labels":{"aa":"ORF1a: G98S; S: Q173K","spike_mutations":"Q173K"}}}]}]},{"name":"NODE_0000524","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.41.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.41.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.728830848084673}},"branch_attrs":{"mutations":{"nuc":["C18877T"]}},"children":[{"name":"JC.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"JC.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.768982660216448}},"branch_attrs":{"mutations":{"nuc":["A21792G"],"S":["K77R"]},"labels":{"aa":"S: K77R","spike_mutations":"K77R"}}},{"name":"JC.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.43418"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JC.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978318039991315}},"branch_attrs":{"mutations":{"nuc":["T44C","T1657C","G3431T","A22578G"],"ORF1a":["V1056L"],"S":["H339R"]},"labels":{"aa":"ORF1a: V1056L; S: H339R","spike_mutations":"H339R"}}},{"name":"JC.3","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JC.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["C10336T","A23670T","G29560T"],"S":["N703I"]},"labels":{"aa":"S: N703I","spike_mutations":"N703I"}}},{"name":"JC.4","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9269336044749594"},"partiallyAliased":{"value":"XBB.1.41.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.51123"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JC.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.603419025907854}},"branch_attrs":{"mutations":{"nuc":["A22005G"],"S":["N148S"]},"labels":{"aa":"S: N148S","spike_mutations":"N148S"}}}]}]}]},{"name":"internal_XBB_1_17","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.17"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.17"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.933491623892665}},"branch_attrs":{"mutations":{"nuc":["C1670T","T27995C"],"ORF1a":["L469F"]},"labels":{"aa":"ORF1a: L469F"}},"children":[{"name":"XBB.1.17","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.17"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.933491623892665}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.17.2","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.17.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.424362936897237}},"branch_attrs":{"mutations":{"nuc":["G2357T"],"ORF1a":["A698S"]},"labels":{"aa":"ORF1a: A698S"}}},{"name":"NODE_0000526","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.17.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.17.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.7232493959921555}},"branch_attrs":{"mutations":{"nuc":["G22205C","T23018C"],"S":["D215H","S486P"]},"labels":{"aa":"S: D215H, S486P","spike_mutations":"D215H, S486P"}},"children":[{"name":"GA.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"GA.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8959066579881}},"branch_attrs":{"mutations":{"nuc":["G2447T"],"ORF1a":["G728C"]},"labels":{"aa":"ORF1a: G728C"}}},{"name":"XBB.1.17.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.17.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.7232493959921555}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000527","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.17.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.17.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.173954476828282}},"branch_attrs":{"mutations":{"nuc":["G20173A"],"ORF1b":["V2236I"]},"labels":{"aa":"ORF1b: V2236I"}},"children":[{"name":"GA.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"GA.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["C14024T"],"ORF1b":["A186V"]},"labels":{"aa":"ORF1b: A186V"}}},{"name":"GA.5","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GA.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.054360080122342}},"branch_attrs":{"mutations":{"nuc":["T23797C"]}}},{"name":"GA.9","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GA.9"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["T7534C","G25593T","C29719A"],"ORF3a":["K67N"]},"labels":{"aa":"ORF3a: K67N"}}},{"name":"NODE_0000528","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.17.1.10"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.10"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-7.896548681115474}},"branch_attrs":{"mutations":{"nuc":["G13822A"],"ORF1b":["V119I"]},"labels":{"aa":"ORF1b: V119I"}},"children":[{"name":"GA.10","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GA.10"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-7.896548681115474}},"branch_attrs":{"mutations":{}}},{"name":"GA.10.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.17.1.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-12-03"},"Nextclade_pango":{"value":"GA.10.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907769989352378}},"branch_attrs":{"mutations":{"nuc":["T1354C","A1367G","C2592T","T3906C","C6573T","A19307G","G22927T","T22928C","A22995G","C25156T","G26828C","C26895T","G26959A","G27561T","C28567T"],"M":["H125Y","R146H"],"ORF1a":["I368V","A776V","F1214S","S2103F"],"ORF1b":["K1947R"],"ORF9b":["T95M"],"S":["L455F","F456L","K478R"]},"labels":{"aa":"M: H125Y, R146H; ORF1a: I368V, A776V, F1214S, S2103F; ORF1b: K1947R; ORF9b: T95M; S: L455F, F456L, K478R","spike_mutations":"L455F, F456L, K478R"}}}]},{"name":"NODE_0000529","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.17.1.6"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.6"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.270883116979843}},"branch_attrs":{"mutations":{"nuc":["A6677G","G8785A"],"ORF1a":["I2138V"]},"labels":{"aa":"ORF1a: I2138V"}},"children":[{"name":"GA.6","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GA.6"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.270883116979843}},"branch_attrs":{"mutations":{}}},{"name":"GA.6.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.17.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GA.6.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.083440384892851}},"branch_attrs":{"mutations":{"nuc":["T44C","A19767G","C22311T","A22995G","C29642T"],"S":["T250I","K478R"]},"labels":{"aa":"S: T250I, K478R","spike_mutations":"T250I, K478R"}}}]},{"name":"NODE_0000530","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.17.1.8"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.8"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.4923596484984145}},"branch_attrs":{"mutations":{"nuc":["C3619T","C27389T"]}},"children":[{"name":"GA.8","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GA.8"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.362430487959897}},"branch_attrs":{"mutations":{"nuc":["A4916G"],"ORF1a":["I1551V"]},"labels":{"aa":"ORF1a: I1551V"}}},{"name":"GA.8.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9277075627549338"},"partiallyAliased":{"value":"XBB.1.17.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.96117"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GA.8.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["A17508G","C19970T","C21721T","A22106G","T23042C","G23222A","C26895T","G28198T"],"M":["H125Y"],"ORF1b":["A2168V"],"ORF8":["C102F"],"S":["K182E","S494P","E554K"]},"labels":{"aa":"M: H125Y; ORF1b: A2168V; ORF8: C102F; S: K182E, S494P, E554K","spike_mutations":"K182E, S494P, E554K"}}}]},{"name":"NODE_0000531","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.17.1.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.116501934379858}},"branch_attrs":{"mutations":{"nuc":["T6640C","A25927T"],"ORF3a":["I179F"]},"labels":{"aa":"ORF3a: I179F"}},"children":[{"name":"GA.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"GA.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.116501934379858}},"branch_attrs":{"mutations":{}}},{"name":"GA.2.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GA.2.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["G23222A"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"GA.2.1.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"1.0066947319842137"},"partiallyAliased":{"value":"XBB.1.17.1.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.80721"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GA.2.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["A518-","T519-","G520-","C9857T","C10279T","A12235G","A22910G","A22995G","G23222A","C29002T"],"ORF1a":["M85-"],"S":["N450D","K478R","E554K"]},"labels":{"aa":"ORF1a: M85-; S: N450D, K478R, E554K","spike_mutations":"N450D, K478R, E554K"}}}]},{"name":"NODE_0000532","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.17.1.7"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.7"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.770180848098897}},"branch_attrs":{"mutations":{"nuc":["A2130G","C4551T"],"ORF1a":["E622G","T1429I"]},"labels":{"aa":"ORF1a: E622G, T1429I"}},"children":[{"name":"GA.7","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GA.7"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.770180848098897}},"branch_attrs":{"mutations":{}}},{"name":"GA.7.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":18},"immune_escape":{"value":"0.9307698749546415"},"partiallyAliased":{"value":"XBB.1.17.1.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.90647"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GA.7.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["C8140T","C9298T","A22005C","A22091-","T22092-","G22093-","G22094-","A22095-","C22096-","C22097-","T22098-","T22099-","G22100-","A22101-","A22102-","G22103-","G22104-","A22105-","A22215G","T23042C","C23123T","T25902A"],"S":["N148T","M177-","D178-","L179-","E180-","G181-","Q218R","S494P","P521S"]},"labels":{"aa":"S: N148T, M177-, D178-, L179-, E180-, G181-, Q218R, S494P, P521S","spike_mutations":"N148T, M177-, D178-, L179-, E180-, G181-, Q218R, S494P, P521S"}}},{"name":"GA.7.2","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.17.1.7.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GA.7.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.728139426413869}},"branch_attrs":{"mutations":{"nuc":["C22295T"],"S":["H245Y"]},"labels":{"aa":"S: H245Y","spike_mutations":"H245Y"}}}]},{"name":"NODE_0000533","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.17.1.4"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.4"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.978020940115946}},"branch_attrs":{"mutations":{"nuc":["A3503G","C7923T","A22629C"],"ORF1a":["N1080D","S2553F"],"S":["K356T"]},"labels":{"aa":"ORF1a: N1080D, S2553F; S: K356T","spike_mutations":"K356T"}},"children":[{"name":"GA.4","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.17.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GA.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.978020940115946}},"branch_attrs":{"mutations":{}}},{"name":"GA.4.2","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.176216351680304"},"partiallyAliased":{"value":"XBB.1.17.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.86275"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GA.4.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-9.097293832704947}},"branch_attrs":{"mutations":{"nuc":["C841T","C9857T","C20404T","A22995G","G23236T","G24932A","C29095T","T29772A"],"ORF1b":["P2313S"],"S":["K478R","K558N","G1124S"]},"labels":{"aa":"ORF1b: P2313S; S: K478R, K558N, G1124S","spike_mutations":"K478R, K558N, G1124S"}}},{"name":"NODE_0000534","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.17.1.4"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.4"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-10}},"branch_attrs":{"mutations":{"nuc":["T3442C","A28877T","G28878C"]}},"children":[{"name":"GA.4.3","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.17.1.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GA.4.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731678730296696}},"branch_attrs":{"mutations":{"nuc":["T3055C","G8185A","C16887T","G17019T","T22118C","C23315T","G25009A","T26103C"],"ORF1b":["E1184D"],"S":["F186L","L585F"]},"labels":{"aa":"ORF1b: E1184D; S: F186L, L585F","spike_mutations":"F186L, L585F"}}},{"name":"NODE_0000535","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.17.1.4.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"GA.4.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.847072148998766}},"branch_attrs":{"mutations":{"nuc":["T5290C","C22295T","A22995G","G23222A","C23673T","A28173G","C28896T"],"N":["A208V"],"ORF8":["K94E"],"S":["H245Y","K478R","E554K","S704L"]},"labels":{"aa":"N: A208V; ORF8: K94E; S: H245Y, K478R, E554K, S704L","spike_mutations":"H245Y, K478R, E554K, S704L"}},"children":[{"name":"GA.4.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.176216351680304"},"partiallyAliased":{"value":"XBB.1.17.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.86275"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"GA.4.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847072148998766}},"branch_attrs":{"mutations":{}}},{"name":"GA.4.1.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.176216351680304"},"partiallyAliased":{"value":"XBB.1.17.1.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.86275"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"GA.4.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["G23587C"],"S":["Q675H"]},"labels":{"aa":"S: Q675H","spike_mutations":"Q675H"}}},{"name":"GA.4.1.2","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.176216351680304"},"partiallyAliased":{"value":"XBB.1.17.1.4.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.86275"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"GA.4.1.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["C763T","G1820A","C23277T","C25791T","G27238C"],"ORF1a":["G519S"],"ORF6":["E13Q"],"S":["T572I"]},"labels":{"aa":"ORF1a: G519S; ORF6: E13Q; S: T572I","spike_mutations":"T572I"}}},{"name":"GA.4.1.3","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.176216351680304"},"partiallyAliased":{"value":"XBB.1.17.1.4.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.86275"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"GA.4.1.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731678730296696}},"branch_attrs":{"mutations":{"nuc":["C2462T","G4280A","T20229C","G29383T"],"N":["K370N"],"ORF1a":["V1339I"]},"labels":{"aa":"N: K370N; ORF1a: V1339I"}}}]}]}]}]}]}]},{"name":"internal_XBB_1_5","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.5"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.8131894862564644}},"branch_attrs":{"mutations":{"nuc":["G1T","T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","clade":"23A","spike_mutations":"S486P"}},"children":[{"name":"XBB.1.5","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2022-11-08"},"Nextclade_pango":{"value":"XBB.1.5"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8131894862564644}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.5.110","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.110"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.1.5.110"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.352154843630681}},"branch_attrs":{"mutations":{"nuc":["C12651T"],"ORF1a":["T4129I"]},"labels":{"aa":"ORF1a: T4129I"}}},{"name":"XBB.1.5.22","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.5.22"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.664223322808273}},"branch_attrs":{"mutations":{"nuc":["A4758C","T18126A","C21998A"],"ORF1a":["E1498A"],"S":["Q146K"]},"labels":{"aa":"ORF1a: E1498A; S: Q146K","spike_mutations":"Q146K"}}},{"name":"XBB.1.5.23","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.5.23"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.074876304327812}},"branch_attrs":{"mutations":{"nuc":["C12924T"],"ORF1a":["P4220L"]},"labels":{"aa":"ORF1a: P4220L"}}},{"name":"XBB.1.5.43","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.43"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-24"},"Nextclade_pango":{"value":"XBB.1.5.43"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5650879905967585}},"branch_attrs":{"mutations":{"nuc":["C18501T"]}}},{"name":"XBB.1.5.45","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.45"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-04-23"},"Nextclade_pango":{"value":"XBB.1.5.45"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.991446011894287}},"branch_attrs":{"mutations":{"nuc":["A22995G","C27425T","G28079T"],"ORF7a":["T11I"],"S":["K478R"]},"labels":{"aa":"ORF7a: T11I; S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.57","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.57"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"XBB.1.5.57"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.358274005238381}},"branch_attrs":{"mutations":{"nuc":["A20379G","C28312T"],"ORF9b":["S10F"]},"labels":{"aa":"ORF9b: S10F"}}},{"name":"XBB.1.5.58","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.58"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.58"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["T772A","C2462T","G18286A","C21998A","C23673T","A27218G"],"ORF1b":["V1607I"],"ORF6":["D6G"],"S":["Q146K","S704L"]},"labels":{"aa":"ORF1b: V1607I; ORF6: D6G; S: Q146K, S704L","spike_mutations":"Q146K, S704L"}}},{"name":"XBB.1.5.87","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.87"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.93509"},"designation_date":{"value":"2023-06-13"},"Nextclade_pango":{"value":"XBB.1.5.87"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.8565384647706376}},"branch_attrs":{"mutations":{"nuc":["T44C","T5028A","G5162A","C9763T","C20946T","A22995C","C24130T"],"ORF1a":["M1588K","E1633K"],"S":["K478T"]},"labels":{"aa":"ORF1a: M1588K, E1633K; S: K478T","spike_mutations":"K478T"}}},{"name":"internal_397fbecf","node_attrs":{"div":31,"partiallyAliased":{"value":"XBB.1.5.24"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.24"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.857908107667198}},"branch_attrs":{"mutations":{"nuc":["C2710T"]}},"children":[{"name":"GF.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.24.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"GF.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.035945120584303}},"branch_attrs":{"mutations":{"nuc":["C19524T","A23805T"],"S":["E748V"]},"labels":{"aa":"S: E748V","spike_mutations":"E748V"}}},{"name":"XBB.1.5.24","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.5.24"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.857908107667198}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000538","node_attrs":{"div":31,"partiallyAliased":{"value":"XBB.1.5"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-2.2481264991318257}},"branch_attrs":{"mutations":{"nuc":["T17124C"]}},"children":[{"name":"XBB.1.5.10","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.5.10"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7475116058428113}},"branch_attrs":{"mutations":{"nuc":["C18395T","T22928C"],"ORF1b":["A1643V"],"S":["F456L"]},"labels":{"aa":"ORF1b: A1643V; S: F456L","spike_mutations":"F456L"}}},{"name":"XBB.1.5.101","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.101"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"XBB.1.5.101"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8015676731735955}},"branch_attrs":{"mutations":{"nuc":["C14877T","G27762C"],"ORF7b":["E3Q"]},"labels":{"aa":"ORF7b: E3Q"}}},{"name":"XBB.1.5.104","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.104"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"XBB.1.5.104"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1811432460412385}},"branch_attrs":{"mutations":{"nuc":["A22472C","C29762T"],"S":["K304Q"]},"labels":{"aa":"S: K304Q","spike_mutations":"K304Q"}}},{"name":"XBB.1.5.105","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.105"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"XBB.1.5.105"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978318039991315}},"branch_attrs":{"mutations":{"nuc":["T2698C","C2997T","C5365T","G7684A","T16993C","G19999A","A22474C"],"ORF1a":["S911F"],"ORF1b":["Y1176H","V2178I"],"S":["K304N"]},"labels":{"aa":"ORF1a: S911F; ORF1b: Y1176H, V2178I; S: K304N","spike_mutations":"K304N"}}},{"name":"XBB.1.5.108","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.108"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.1.5.108"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":4.340278},"placement_prior":{"value":-4.978318039991315}},"branch_attrs":{"mutations":{"nuc":["C2245T","G18106T","A22474T","T22930A","C23506T","G28371A","C28657T"],"N":["G30-","-33D"],"ORF1b":["A1547S"],"ORF9b":["V30M"],"S":["K304N","F456L"]},"labels":{"aa":"N: G30-, -33D; ORF1b: A1547S; ORF9b: V30M; S: K304N, F456L","spike_mutations":"K304N, F456L"}}},{"name":"XBB.1.5.109","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.109"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.1.5.109"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":1.5625},"placement_prior":{"value":-5.354849428538635}},"branch_attrs":{"mutations":{"nuc":["A2225G","C5512T","C17439T","T22928C","A29700G"],"ORF1a":["T654A"],"S":["F456L"]},"labels":{"aa":"ORF1a: T654A; S: F456L","spike_mutations":"F456L"}}},{"name":"XBB.1.5.11","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBB.1.5.11"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.909927831070965}},"branch_attrs":{"mutations":{"nuc":["G1466A"],"ORF1a":["G401S"]},"labels":{"aa":"ORF1a: G401S"}}},{"name":"XBB.1.5.12","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBB.1.5.12"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.631259440430189}},"branch_attrs":{"mutations":{"nuc":["C22530T"],"S":["T323I"]},"labels":{"aa":"S: T323I","spike_mutations":"T323I"}}},{"name":"XBB.1.5.18","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.1.5.18"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.71010579730591}},"branch_attrs":{"mutations":{"nuc":["T44C","C7164T"],"ORF1a":["T2300I"]},"labels":{"aa":"ORF1a: T2300I"}}},{"name":"XBB.1.5.2","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-01-29"},"Nextclade_pango":{"value":"XBB.1.5.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.999921045256298}},"branch_attrs":{"mutations":{"nuc":["A22002T","C22413T"],"S":["K147I","T284I"]},"labels":{"aa":"S: K147I, T284I","spike_mutations":"K147I, T284I"}}},{"name":"XBB.1.5.28","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"XBB.1.5.28"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8743610100407215}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.29","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0953036454007203"},"partiallyAliased":{"value":"XBB.1.5.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.41404999999999986"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"XBB.1.5.29"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["T2506C","C11687T","C17874T","C20402T","C20759T","C22605T"],"ORF1a":["L3808F"],"ORF1b":["S2312L","A2431V"],"S":["A348V"]},"labels":{"aa":"ORF1a: L3808F; ORF1b: S2312L, A2431V; S: A348V","spike_mutations":"A348V"}}},{"name":"XBB.1.5.31","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.5.31"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.817048629499274}},"branch_attrs":{"mutations":{"nuc":["T24976C"]}}},{"name":"XBB.1.5.33","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.5.33"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.634354714834832}},"branch_attrs":{"mutations":{"nuc":["G370A"]}}},{"name":"XBB.1.5.34","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.5.34"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.378833049640157}},"branch_attrs":{"mutations":{"nuc":["C5526T","G9802A"],"ORF1a":["T1754I"]},"labels":{"aa":"ORF1a: T1754I"}}},{"name":"XBB.1.5.35","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.5.35"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.988682999019715}},"branch_attrs":{"mutations":{"nuc":["A24495G"],"S":["N978S"]},"labels":{"aa":"S: N978S","spike_mutations":"N978S"}}},{"name":"XBB.1.5.36","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.5.36"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.119373011963049}},"branch_attrs":{"mutations":{"nuc":["C9442T"]}}},{"name":"XBB.1.5.4","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.5.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8105979295924013}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"XBB.1.5.40","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.40"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.95377"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"XBB.1.5.40"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.180029521935247}},"branch_attrs":{"mutations":{"nuc":["A22995T"],"S":["K478I"]},"labels":{"aa":"S: K478I","spike_mutations":"K478I"}}},{"name":"XBB.1.5.51","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.51"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-26"},"Nextclade_pango":{"value":"XBB.1.5.51"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9226643205630203}},"branch_attrs":{"mutations":{"nuc":["A9291C","C25553T"],"ORF1a":["D3009A"],"ORF3a":["A54V"]},"labels":{"aa":"ORF1a: D3009A; ORF3a: A54V"}}},{"name":"XBB.1.5.52","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.52"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-26"},"Nextclade_pango":{"value":"XBB.1.5.52"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.85652195502994}},"branch_attrs":{"mutations":{"nuc":["C3589T"]}}},{"name":"XBB.1.5.54","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.54"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-01"},"Nextclade_pango":{"value":"XBB.1.5.54"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.018468286846067}},"branch_attrs":{"mutations":{"nuc":["C14358T","C20016T","C29311T"]}}},{"name":"XBB.1.5.59","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.59"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.59"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.156338097539252}},"branch_attrs":{"mutations":{"nuc":["T44C","T8729C","T22928C"],"ORF1a":["S2822P"],"S":["F456L"]},"labels":{"aa":"ORF1a: S2822P; S: F456L","spike_mutations":"F456L"}}},{"name":"XBB.1.5.62","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.62"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.62"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.187324034209371}},"branch_attrs":{"mutations":{"nuc":["C29095T"]}}},{"name":"XBB.1.5.63","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.63"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.63"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.698339961294281}},"branch_attrs":{"mutations":{"nuc":["C346T"]}}},{"name":"XBB.1.5.64","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.64"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.64"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1788420910795105}},"branch_attrs":{"mutations":{"nuc":["G8137A","C29708T"]}}},{"name":"XBB.1.5.66","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.66"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.66"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.905406290674358}},"branch_attrs":{"mutations":{"nuc":["G1820A"],"ORF1a":["G519S"]},"labels":{"aa":"ORF1a: G519S"}}},{"name":"XBB.1.5.67","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.67"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.67"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7596424299540603}},"branch_attrs":{"mutations":{"nuc":["C21691T"]}}},{"name":"XBB.1.5.69","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.69"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.5.69"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.33299757690335}},"branch_attrs":{"mutations":{"nuc":["G9092A","C22513T"],"ORF1a":["V2943I"]},"labels":{"aa":"ORF1a: V2943I"}}},{"name":"XBB.1.5.75","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.75"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.75"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.34639188723682}},"branch_attrs":{"mutations":{"nuc":["T44C","C3695T"]}}},{"name":"XBB.1.5.79","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.79"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.79"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.431970343419164}},"branch_attrs":{"mutations":{"nuc":["A29052T"],"N":["Q260L"]},"labels":{"aa":"N: Q260L"}}},{"name":"XBB.1.5.80","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.80"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.80"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.376669405718808}},"branch_attrs":{"mutations":{"nuc":["A16812G","C21812T"]}}},{"name":"XBB.1.5.82","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9799146282531407"},"partiallyAliased":{"value":"XBB.1.5.82"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.91194"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBB.1.5.82"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3051231994726376}},"branch_attrs":{"mutations":{"nuc":["A2863G","A5935G","A22893G","C25854T","C27323T"],"ORF6":["S41F"],"S":["K444R"]},"labels":{"aa":"ORF6: S41F; S: K444R","spike_mutations":"K444R"}}},{"name":"XBB.1.5.85","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.85"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBB.1.5.85"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.120283773649457}},"branch_attrs":{"mutations":{"nuc":["T44C","T6754C","C8293T","C22088T","A22995G","C25693T"],"ORF3a":["L101F"],"S":["L176F","K478R"]},"labels":{"aa":"ORF3a: L101F; S: L176F, K478R","spike_mutations":"L176F, K478R"}}},{"name":"XBB.1.5.97","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.97"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"XBB.1.5.97"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.354078790815539}},"branch_attrs":{"mutations":{"nuc":["T44C","C7834T","A24383T"],"S":["T941S"]},"labels":{"aa":"S: T941S","spike_mutations":"T941S"}}},{"name":"XBB.1.5.98","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.98"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"XBB.1.5.98"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.968743132690454}},"branch_attrs":{"mutations":{"nuc":["T19158C","G23222A","G27987T"],"ORF8":["V32L"],"S":["E554K"]},"labels":{"aa":"ORF8: V32L; S: E554K","spike_mutations":"E554K"}}},{"name":"XBB.1.5.99","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.99"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"XBB.1.5.99"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.366546098145562}},"branch_attrs":{"mutations":{"nuc":["T3630C","C6627T"],"ORF1a":["V1122A","T2121I"]},"labels":{"aa":"ORF1a: V1122A, T2121I"}}},{"name":"NODE_0000539","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.14"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.14"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.27432173766634}},"branch_attrs":{"mutations":{"nuc":["C2695T"]}},"children":[{"name":"EL.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.14.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-21"},"Nextclade_pango":{"value":"EL.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.140276366598354}},"branch_attrs":{"mutations":{"nuc":["C12781T","G23587T"],"S":["Q675H"]},"labels":{"aa":"S: Q675H","spike_mutations":"Q675H"}}},{"name":"XBB.1.5.14","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-21"},"Nextclade_pango":{"value":"XBB.1.5.14"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.27432173766634}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000540","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.7"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.7"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.6259550687246573}},"branch_attrs":{"mutations":{"nuc":["G14209T"],"ORF1b":["V248F"]},"labels":{"aa":"ORF1b: V248F"}},"children":[{"name":"EM.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"EM.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.375561346193817}},"branch_attrs":{"mutations":{"nuc":["T44C","G22203T"],"S":["R214L"]},"labels":{"aa":"S: R214L","spike_mutations":"R214L"}}},{"name":"XBB.1.5.7","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.5.7"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6259550687246573}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_cb7fd0cc","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.38"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.38"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.680504645520613}},"branch_attrs":{"mutations":{"nuc":["C1473T","A23558G"],"ORF1a":["T403I"],"S":["I666V"]},"labels":{"aa":"ORF1a: T403I; S: I666V","spike_mutations":"I666V"}},"children":[{"name":"GG.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.38.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"GG.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9511308117004695}},"branch_attrs":{"mutations":{"nuc":["T44C","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.38","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-27"},"Nextclade_pango":{"value":"XBB.1.5.38"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.680504645520613}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000542","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.9285076745565664}},"branch_attrs":{"mutations":{"nuc":["C23280T"],"S":["T573I"]},"labels":{"aa":"S: T573I","spike_mutations":"T573I"}},"children":[{"name":"HJ.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"HJ.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.808323293523976}},"branch_attrs":{"mutations":{"nuc":["C4543T","G22532A"],"S":["E324K"]},"labels":{"aa":"S: E324K","spike_mutations":"E324K"}}},{"name":"XBB.1.5.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-01-28"},"Nextclade_pango":{"value":"XBB.1.5.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9285076745565664}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000543","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.30"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.30"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.1677726785341065}},"branch_attrs":{"mutations":{"nuc":["G22604A"],"S":["A348T"]},"labels":{"aa":"S: A348T","spike_mutations":"A348T"}},"children":[{"name":"HM.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.102415964116719"},"partiallyAliased":{"value":"XBB.1.5.30.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.29094"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HM.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["C11824T","C17010T","T23005A","C24358A","G25437T","T27614C"],"ORF3a":["L15F"],"ORF7a":["V74A"],"S":["N481K"]},"labels":{"aa":"ORF3a: L15F; ORF7a: V74A; S: N481K","spike_mutations":"N481K"}}},{"name":"XBB.1.5.30","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0953036454007203"},"partiallyAliased":{"value":"XBB.1.5.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.41123000000000004"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"XBB.1.5.30"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1677726785341065}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_22395f88","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.92"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.92"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.727429135293379}},"branch_attrs":{"mutations":{"nuc":["T44C","C3768T"],"ORF1a":["T1168I"]},"labels":{"aa":"ORF1a: T1168I"}},"children":[{"name":"HQ.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.92.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"HQ.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777415427898098}},"branch_attrs":{"mutations":{"nuc":["C823T","C10615T","G23222A"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"XBB.1.5.92","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.92"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-11"},"Nextclade_pango":{"value":"XBB.1.5.92"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.727429135293379}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_1846b094","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.100"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.100"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.506892251660494}},"branch_attrs":{"mutations":{"nuc":["G24926A"],"S":["V1122M"]},"labels":{"aa":"S: V1122M","spike_mutations":"V1122M"}},"children":[{"name":"HY.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.100.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-08-02"},"Nextclade_pango":{"value":"HY.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.426628742479347}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.100","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.100"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-02"},"Nextclade_pango":{"value":"XBB.1.5.100"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.506892251660494}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_884dc5b8","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.3"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.3"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.7304044750314107}},"branch_attrs":{"mutations":{"nuc":["G22793T"],"S":["A411S"]},"labels":{"aa":"S: A411S","spike_mutations":"A411S"}},"children":[{"name":"JK.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9088223439642339"},"partiallyAliased":{"value":"XBB.1.5.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.47537999999999986"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"JK.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.783756624528978}},"branch_attrs":{"mutations":{"nuc":["A22472C","T28665G"],"N":["I131R"],"S":["K304Q"]},"labels":{"aa":"N: I131R; S: K304Q","spike_mutations":"K304Q"}}},{"name":"XBB.1.5.3","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9088223439642339"},"partiallyAliased":{"value":"XBB.1.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.47537999999999986"},"designation_date":{"value":"2023-01-29"},"Nextclade_pango":{"value":"XBB.1.5.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7304044750314107}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_149f3d85","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.107"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.107"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.503850862124963}},"branch_attrs":{"mutations":{"nuc":["C24130T"]}},"children":[{"name":"JZ.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.107.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"JZ.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.806520069075518}},"branch_attrs":{"mutations":{"nuc":["C18508T","T22928C"],"ORF1b":["L1681F"],"S":["F456L"]},"labels":{"aa":"ORF1b: L1681F; S: F456L","spike_mutations":"F456L"}}},{"name":"XBB.1.5.107","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.107"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"XBB.1.5.107"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.503850862124963}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_101d8393","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.56764388859267}},"branch_attrs":{"mutations":{"nuc":["C20178T"]}},"children":[{"name":"XBB.1.5.50","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.50"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-26"},"Nextclade_pango":{"value":"XBB.1.5.50"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.416129916091233}},"branch_attrs":{"mutations":{"nuc":["C6555T","C23423T","C28419T","T28945C"],"N":["T49I"],"ORF1a":["A2097V"],"S":["P621S"]},"labels":{"aa":"N: T49I; ORF1a: A2097V; S: P621S","spike_mutations":"P621S"}}},{"name":"XBB.1.5.71","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":16},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.71"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.48403999999999986"},"designation_date":{"value":"2023-05-25"},"Nextclade_pango":{"value":"XBB.1.5.71"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.277282232380855}},"branch_attrs":{"mutations":{"nuc":["G510-","T511-","C512-","A513-","T514-","G515-","T516-","T517-","A518-","C21691T","G23093A"],"ORF1a":["G82-","H83-","V84-","M85V"],"S":["V511I"]},"labels":{"aa":"ORF1a: G82-, H83-, V84-, M85V; S: V511I","spike_mutations":"V511I"}}}]},{"name":"NODE_0000549","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.21"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.21"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.186577895269382}},"branch_attrs":{"mutations":{"nuc":["A1230G","C22945T"],"ORF1a":["K322R"]},"labels":{"aa":"ORF1a: K322R"}},"children":[{"name":"GC.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.21.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"GC.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16735626437147}},"branch_attrs":{"mutations":{"nuc":["T13291G","C20178T","C22530T","T23137C","G29554A"],"ORF1a":["F4342L"],"S":["T323I"]},"labels":{"aa":"ORF1a: F4342L; S: T323I","spike_mutations":"T323I"}}},{"name":"GC.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0101996183150468"},"partiallyAliased":{"value":"XBB.1.5.21.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.9061"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"GC.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.402872101375307}},"branch_attrs":{"mutations":{"nuc":["G22616T"],"S":["A352S"]},"labels":{"aa":"S: A352S","spike_mutations":"A352S"}}},{"name":"XBB.1.5.21","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.1.5.21"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.186577895269382}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000550","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.86"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.86"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.23615524117566}},"branch_attrs":{"mutations":{"nuc":["G8867A"],"ORF1a":["G2868S"]},"labels":{"aa":"ORF1a: G2868S"}},"children":[{"name":"XBB.1.5.86","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.86"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBB.1.5.86"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.23615524117566}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000551","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.86"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.86"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.921166262378783}},"branch_attrs":{"mutations":{"nuc":["A11399G"],"ORF1a":["M3712V"]},"labels":{"aa":"ORF1a: M3712V"}},"children":[{"name":"HA.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.86.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"HA.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.072002007795789}},"branch_attrs":{"mutations":{"nuc":["T22930A"],"S":["F456L"]},"labels":{"aa":"S: F456L","spike_mutations":"F456L"}}},{"name":"HA.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.1.5.86.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"HA.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.872291377770467}},"branch_attrs":{"mutations":{"nuc":["C23123T"],"S":["P521S"]},"labels":{"aa":"S: P521S","spike_mutations":"P521S"}}}]}]},{"name":"NODE_0000552","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.93"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.93"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.919139957988552}},"branch_attrs":{"mutations":{"nuc":["C337T","C19186T"]}},"children":[{"name":"XBB.1.5.93","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.93"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-11"},"Nextclade_pango":{"value":"XBB.1.5.93"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.919139957988552}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000553","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.5.93.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"HD.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.7316194773486675}},"branch_attrs":{"mutations":{"nuc":["T44C","T2308C","C7104A","A7483G","C15951T","T18510A","C22599T","C26807T"],"ORF1a":["T2280N"],"S":["T346I"]},"labels":{"aa":"ORF1a: T2280N; S: T346I","spike_mutations":"T346I"}},"children":[{"name":"HD.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.93.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.7416800000000001"},"designation_date":{"value":"2023-07-11"},"Nextclade_pango":{"value":"HD.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.7316194773486675}},"branch_attrs":{"mutations":{}}},{"name":"HD.1.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.5.93.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.73864"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HD.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907681112961623}},"branch_attrs":{"mutations":{"nuc":["A22629C"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}}}]}]},{"name":"internal_bb14c08e","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.55"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.55"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.232351878293091}},"branch_attrs":{"mutations":{"nuc":["C10332T"],"ORF1a":["T3356I"]},"labels":{"aa":"ORF1a: T3356I"}},"children":[{"name":"XBB.1.5.55","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.55"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-03"},"Nextclade_pango":{"value":"XBB.1.5.55"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.232351878293091}},"branch_attrs":{"mutations":{}}},{"name":"internal_479ab5c8","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.55.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"HP.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.770179229254093}},"branch_attrs":{"mutations":{"nuc":["C28310T","C29095T"],"N":["L13F"]},"labels":{"aa":"N: L13F"}},"children":[{"name":"HP.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.55.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"HP.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.770179229254093}},"branch_attrs":{"mutations":{}}},{"name":"HP.1.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.55.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"HP.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.801485651907215}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]}]},{"name":"internal_7190b9dc","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.95"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.95"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.2708524823814225}},"branch_attrs":{"mutations":{"nuc":["C5817T"],"ORF1a":["A1851V"]},"labels":{"aa":"ORF1a: A1851V"}},"children":[{"name":"XBB.1.5.95","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.95"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"XBB.1.5.95"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2708524823814225}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000557","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.95.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"HS.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.867417344318535}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"HS.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.95.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"HS.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.867417344318535}},"branch_attrs":{"mutations":{}}},{"name":"HS.1.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.5.95.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"HS.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.079191185834836}},"branch_attrs":{"mutations":{"nuc":["C6628T","T10084A","C10252T","T22928C","G28077T"],"ORF8":["V62L"],"S":["F456L"]},"labels":{"aa":"ORF8: V62L; S: F456L","spike_mutations":"F456L"}}}]}]},{"name":"internal_e17e","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.16"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.16"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.043006283559635}},"branch_attrs":{"mutations":{"nuc":["T14766C"]}},"children":[{"name":"FG.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9208590646614168"},"partiallyAliased":{"value":"XBB.1.5.16.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.1186099999999999"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"FG.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509717710525144}},"branch_attrs":{"mutations":{"nuc":["C1190T","C22413T","G22770A","C23099T","A24430C","C25484T","C26198T"],"ORF1a":["P309S"],"ORF3a":["A31V","T269M"],"S":["T284I","R403K","L513F"]},"labels":{"aa":"ORF1a: P309S; ORF3a: A31V, T269M; S: T284I, R403K, L513F","spike_mutations":"T284I, R403K, L513F"}}},{"name":"FG.2","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.16.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"FG.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.60993153795769}},"branch_attrs":{"mutations":{"nuc":["G22094A"],"S":["D178N"]},"labels":{"aa":"S: D178N","spike_mutations":"D178N"}}},{"name":"FG.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.16.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"FG.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.722363633725985}},"branch_attrs":{"mutations":{"nuc":["T44C","A24362G"],"S":["I934V"]},"labels":{"aa":"S: I934V","spike_mutations":"I934V"}}},{"name":"XBB.1.5.16","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.1.5.16"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.043006283559635}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000559","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.47"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.47"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.284319330638882}},"branch_attrs":{"mutations":{"nuc":["T44C","C1912T"]}},"children":[{"name":"FZ.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.47.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"FZ.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.02241838502756}},"branch_attrs":{"mutations":{"nuc":["T11377A","A24069G"],"S":["Q836R"]},"labels":{"aa":"S: Q836R","spike_mutations":"Q836R"}}},{"name":"XBB.1.5.47","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.47"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-25"},"Nextclade_pango":{"value":"XBB.1.5.47"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.284319330638882}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000560","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.47.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"FZ.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.2247954542459425}},"branch_attrs":{"mutations":{"nuc":["G23311T"],"S":["E583D"]},"labels":{"aa":"S: E583D","spike_mutations":"E583D"}},"children":[{"name":"FZ.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.47.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"FZ.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.2247954542459425}},"branch_attrs":{"mutations":{}}},{"name":"FZ.1.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.47.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"FZ.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.886572225080612}},"branch_attrs":{"mutations":{"nuc":["A24005C","G24007T","C24134A","A24922G","G25972A"],"ORF3a":["E194K"],"S":["L858I"]},"labels":{"aa":"ORF3a: E194K; S: L858I","spike_mutations":"L858I"}}}]}]},{"name":"NODE_0000561","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.68"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.68"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.450642509856148}},"branch_attrs":{"mutations":{"nuc":["C18501T","C23123A","C25603A"],"ORF3a":["L71I"],"S":["P521T"]},"labels":{"aa":"ORF3a: L71I; S: P521T","spike_mutations":"P521T"}},"children":[{"name":"HZ.3","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.1.5.68.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.93473"},"designation_date":{"value":"2023-08-04"},"Nextclade_pango":{"value":"HZ.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.930016836471855}},"branch_attrs":{"mutations":{"nuc":["T11343C"],"ORF1a":["I3693T"]},"labels":{"aa":"ORF1a: I3693T"}}},{"name":"XBB.1.5.68","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.1.5.68"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.93473"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.68"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.450642509856148}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000562","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.5.68"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.68"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-6.273913017505305}},"branch_attrs":{"mutations":{"nuc":["T10721C"],"ORF1a":["F3486L"]},"labels":{"aa":"ORF1a: F3486L"}},"children":[{"name":"HZ.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.5.68.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.78812"},"designation_date":{"value":"2023-08-04"},"Nextclade_pango":{"value":"HZ.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.21979354602964}},"branch_attrs":{"mutations":{"nuc":["A22995G","C23266T","A28108T"],"ORF8":["Q72L"],"S":["K478R"]},"labels":{"aa":"ORF8: Q72L; S: K478R","spike_mutations":"K478R"}}},{"name":"HZ.2","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.1.5.68.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.93473"},"designation_date":{"value":"2023-08-04"},"Nextclade_pango":{"value":"HZ.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.527555044094669}},"branch_attrs":{"mutations":{"nuc":["C11003T"],"ORF1a":["H3580Y"]},"labels":{"aa":"ORF1a: H3580Y"}}}]}]},{"name":"NODE_0000563","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.5.44"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.44"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-6.287308045067631}},"branch_attrs":{"mutations":{"nuc":["C1288T","C16332T","C16989T","C19263T","A22629C","C23277T","C25667T"],"ORF3a":["S92L"],"S":["K356T","T572I"]},"labels":{"aa":"ORF3a: S92L; S: K356T, T572I","spike_mutations":"K356T, T572I"}},"children":[{"name":"HC.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.5.44.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"HC.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.2387030600584445}},"branch_attrs":{"mutations":{"nuc":["C5849T","A11588G","A21999C","C23453T"],"ORF1a":["P1862S","T3775A"],"S":["Q146P","P631S"]},"labels":{"aa":"ORF1a: P1862S, T3775A; S: Q146P, P631S","spike_mutations":"Q146P, P631S"}}},{"name":"XBB.1.5.44","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.5.44"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-04-23"},"Nextclade_pango":{"value":"XBB.1.5.44"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.287308045067631}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000564","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.5.44"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.44"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.724500145669572}},"branch_attrs":{"mutations":{"nuc":["G3483T"],"ORF1a":["G1073V"]},"labels":{"aa":"ORF1a: G1073V"}},"children":[{"name":"HC.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.5.44.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-08-25"},"Nextclade_pango":{"value":"HC.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.111889972008302}},"branch_attrs":{"mutations":{"nuc":["A1540G","C4331T","C10252T","C11095T","C22033A","A28699T"],"S":["F157L"]},"labels":{"aa":"S: F157L","spike_mutations":"F157L"}}},{"name":"HC.3","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.5.44.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"HC.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363701945002102}},"branch_attrs":{"mutations":{"nuc":["A10399G","C19983T","C23939T","C27881T"],"S":["P793S"]},"labels":{"aa":"S: P793S","spike_mutations":"P793S"}}},{"name":"HC.4","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.5.44.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"HC.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606739993688397}},"branch_attrs":{"mutations":{"nuc":["C4320T","G5837A","C13297T","T14040C","G24812C","T26112C"],"ORF1a":["A1352V","E1858K"],"S":["D1084H"]},"labels":{"aa":"ORF1a: A1352V, E1858K; S: D1084H","spike_mutations":"D1084H"}}}]}]},{"name":"NODE_0000565","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.13"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.13"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.5888972084237345}},"branch_attrs":{"mutations":{"nuc":["T21880C","G28079T"]}},"children":[{"name":"EK.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":14},"immune_escape":{"value":"0.9654857066494721"},"partiallyAliased":{"value":"XBB.1.5.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.9873000000000001"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"EK.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["A518-","T519-","G520-","C16173T","A22812G","C26936A","-29734G","-29735A","-29736G","-29737G","-29738C","-29739C","-29740A","-29741C","-29742G","-29743C","-29744G","-29745G","-29746A","-29747G","-29748T","-29749A","-29750C","-29751G","-29752A","-29753T","-29754C","-29755G","-29756A","-29757G","-29758T","-29759G"],"ORF1a":["M85-"],"S":["N417S"]},"labels":{"aa":"ORF1a: M85-; S: N417S","spike_mutations":"N417S"}}},{"name":"EK.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.13.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"EK.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.717057348697788}},"branch_attrs":{"mutations":{"nuc":["A20118G","C22313T","A29844G"],"S":["P251S"]},"labels":{"aa":"S: P251S","spike_mutations":"P251S"}}},{"name":"EK.4","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.13.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-01"},"Nextclade_pango":{"value":"EK.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.083610936922182}},"branch_attrs":{"mutations":{"nuc":["C23585A"],"S":["Q675K"]},"labels":{"aa":"S: Q675K","spike_mutations":"Q675K"}}},{"name":"XBB.1.5.13","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBB.1.5.13"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5888972084237345}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000566","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.5.13.2"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"EK.2"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.819020541897877}},"branch_attrs":{"mutations":{"nuc":["C715T","C11750T","T16539C","C22338T"],"ORF1a":["L3829F"],"S":["T259I"]},"labels":{"aa":"ORF1a: L3829F; S: T259I","spike_mutations":"T259I"}},"children":[{"name":"EK.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.13.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"EK.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.819020541897877}},"branch_attrs":{"mutations":{}}},{"name":"EK.2.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.13.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"EK.2.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8598212994042}},"branch_attrs":{"mutations":{"nuc":["T44C","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]}]},{"name":"NODE_0000567","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5.26"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.26"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.550265770671565}},"branch_attrs":{"mutations":{"nuc":["C920T"]}},"children":[{"name":"XBB.1.5.26","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.5.26"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.550265770671565}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000568","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.26.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"EU.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.952316088443168}},"branch_attrs":{"mutations":{"nuc":["C21910A","C23123T"],"S":["P521S"]},"labels":{"aa":"S: P521S","spike_mutations":"P521S"}},"children":[{"name":"EU.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.1.5.26.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.9577000000000001"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"EU.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.952316088443168}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000569","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.5.26.1.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"EU.1.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.2098737762500855}},"branch_attrs":{"mutations":{"nuc":["T44C","A22790G"],"S":["I410V"]},"labels":{"aa":"S: I410V","spike_mutations":"I410V"}},"children":[{"name":"EU.1.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9102379096579155"},"partiallyAliased":{"value":"XBB.1.5.26.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.5237400000000001"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"EU.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2098737762500855}},"branch_attrs":{"mutations":{}}},{"name":"EU.1.1.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9102379096579155"},"partiallyAliased":{"value":"XBB.1.5.26.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.5237400000000001"},"designation_date":{"value":"2023-04-26"},"Nextclade_pango":{"value":"EU.1.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.383888722531038}},"branch_attrs":{"mutations":{"nuc":["C21646T"]}}},{"name":"EU.1.1.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9102379096579155"},"partiallyAliased":{"value":"XBB.1.5.26.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.5237400000000001"},"designation_date":{"value":"2023-06-11"},"Nextclade_pango":{"value":"EU.1.1.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.2922779904835435}},"branch_attrs":{"mutations":{"nuc":["G24770T"],"S":["A1070S"]},"labels":{"aa":"S: A1070S","spike_mutations":"A1070S"}}},{"name":"EU.1.1.3","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9102379096579155"},"partiallyAliased":{"value":"XBB.1.5.26.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.5237400000000001"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"EU.1.1.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.592473464053139}},"branch_attrs":{"mutations":{"nuc":["C22033A","C28045T"],"ORF8":["A51V"],"S":["F157L"]},"labels":{"aa":"ORF8: A51V; S: F157L","spike_mutations":"F157L"}}}]}]}]},{"name":"NODE_0000570","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.73"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.73"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.4165915731486205}},"branch_attrs":{"mutations":{"nuc":["T44C","T28271C"]}},"children":[{"name":"GN.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.73.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GN.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.788263212235075}},"branch_attrs":{"mutations":{"nuc":["C27143T"]}}},{"name":"GN.4","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.73.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GN.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.166980458660877}},"branch_attrs":{"mutations":{"nuc":["A12162T"],"ORF1a":["Q3966L"]},"labels":{"aa":"ORF1a: Q3966L"}}},{"name":"GN.5","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.73.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GN.5"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["C3593A","C12669T"],"ORF1a":["L1110I","S4135F"]},"labels":{"aa":"ORF1a: L1110I, S4135F"}}},{"name":"XBB.1.5.73","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.73"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.73"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4165915731486205}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000571","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.5.73"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.73"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.80223778853888}},"branch_attrs":{"mutations":{"nuc":["C7834T","C10332T","G25445T"],"ORF1a":["T3356I"],"ORF3a":["G18V"]},"labels":{"aa":"ORF1a: T3356I; ORF3a: G18V"}},"children":[{"name":"GN.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.73.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GN.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["C25688G"],"ORF3a":["A99G"]},"labels":{"aa":"ORF3a: A99G"}}},{"name":"NODE_0000572","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.5.73.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"GN.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.466195608617762}},"branch_attrs":{"mutations":{"nuc":["T22928C"],"S":["F456L"]},"labels":{"aa":"S: F456L","spike_mutations":"F456L"}},"children":[{"name":"GN.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.73.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GN.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.466195608617762}},"branch_attrs":{"mutations":{}}},{"name":"GN.1.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.73.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"GN.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.547606292505971}},"branch_attrs":{"mutations":{"nuc":["C92T","C18395T"],"ORF1b":["A1643V"]},"labels":{"aa":"ORF1b: A1643V"}}},{"name":"GN.1.2","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.73.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"GN.1.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-9.097293832704947}},"branch_attrs":{"mutations":{"nuc":["C6286T","A22524T","C27524T"],"ORF7a":["S44L"],"S":["Q321L"]},"labels":{"aa":"ORF7a: S44L; S: Q321L","spike_mutations":"Q321L"}}},{"name":"GN.1.3","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.73.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"GN.1.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36362174907267}},"branch_attrs":{"mutations":{"nuc":["C12896A","C17163T","C20115T","G22927T","A23971T","T29760C"],"ORF1a":["P4211T"],"S":["L455F"]},"labels":{"aa":"ORF1a: P4211T; S: L455F","spike_mutations":"L455F"}}},{"name":"GN.1.4","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.73.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"GN.1.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062631849522303}},"branch_attrs":{"mutations":{"nuc":["T2548C","T16866C","T18990C","T21799C","G22104T"],"S":["G181V"]},"labels":{"aa":"S: G181V","spike_mutations":"G181V"}}}]}]}]},{"name":"internal_81e030d7","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.5.102"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.102"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.820171204451009}},"branch_attrs":{"mutations":{"nuc":["T44C","C6896T","C14085T","C19488T"]}},"children":[{"name":"XBB.1.5.102","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.102"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"XBB.1.5.102"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.820171204451009}},"branch_attrs":{"mutations":{}}},{"name":"internal_854db48f","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.5.102.2"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.2"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.41267942780059}},"branch_attrs":{"mutations":{"nuc":["G4255A","C20629T"],"ORF1b":["H2388Y"]},"labels":{"aa":"ORF1b: H2388Y"}},"children":[{"name":"JD.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.102.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"JD.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.41267942780059}},"branch_attrs":{"mutations":{}}},{"name":"JD.2.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.102.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"JD.2.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["G1820A","C14178T","T22510C","G23222A","C27513T"],"ORF1a":["G519S"],"S":["E554K"]},"labels":{"aa":"ORF1a: G519S; S: E554K","spike_mutations":"E554K"}}}]},{"name":"internal_f85df148","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.5.102.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-6.008043477169306}},"branch_attrs":{"mutations":{"nuc":["A14634G","G22927T","T22928C","T28282C"],"S":["L455F","F456L"]},"labels":{"aa":"S: L455F, F456L","spike_mutations":"L455F, F456L"}},"children":[{"name":"JD.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.102.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-08-22"},"Nextclade_pango":{"value":"JD.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.008043477169306}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000576","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.5.102.1.2"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.1.2"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.9866145119663265}},"branch_attrs":{"mutations":{"nuc":["A19182G","C25046T"],"S":["P1162S"]},"labels":{"aa":"S: P1162S","spike_mutations":"P1162S"}},"children":[{"name":"JD.1.2","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.102.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-08-25"},"Nextclade_pango":{"value":"JD.1.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.9866145119663265}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000577","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.5.102.1.2"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.1.2"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.270883116979843}},"branch_attrs":{"mutations":{"nuc":["C29762T"]}},"children":[{"name":"JD.1.2.1","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.102.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-12"},"Nextclade_pango":{"value":"JD.1.2.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062659251597256}},"branch_attrs":{"mutations":{"nuc":["C44T","T6136C","C13968T","C15951T","C16887T","T18435G","G23222C","C28087T","C28657T","C29367T"],"N":["P365L"],"ORF1b":["D1656E"],"ORF8":["A65V"],"S":["E554Q"]},"labels":{"aa":"N: P365L; ORF1b: D1656E; ORF8: A65V; S: E554Q","spike_mutations":"E554Q"}}},{"name":"JD.1.2.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.102.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"JD.1.2.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["C925T","T15309C","G24794A"],"S":["A1078T"]},"labels":{"aa":"S: A1078T","spike_mutations":"A1078T"}}}]}]},{"name":"NODE_0000578","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.5.102.1.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.1.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.976541284845272}},"branch_attrs":{"mutations":{"nuc":["C14189T","C22986T"],"ORF1b":["A241V"],"S":["A475V"]},"labels":{"aa":"ORF1b: A241V; S: A475V","spike_mutations":"A475V"}},"children":[{"name":"JD.1.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-08-25"},"Nextclade_pango":{"value":"JD.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.976541284845272}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000579","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.5.102.1.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.1.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.254375803025593}},"branch_attrs":{"mutations":{"nuc":["C28087T"],"ORF8":["A65V"]},"labels":{"aa":"ORF8: A65V"}},"children":[{"name":"NODE_0000580","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.5.102.1.1.8"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.1.1.8"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.5237935031656615}},"branch_attrs":{"mutations":{"nuc":["T3547A","A3706T"],"ORF1a":["N1094K"]},"labels":{"aa":"ORF1a: N1094K"}},"children":[{"name":"JD.1.1.8","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"JD.1.1.8"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5237935031656615}},"branch_attrs":{"mutations":{}}},{"name":"KK.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"KK.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0.694444},"placement_prior":{"value":-5.032671299350727}},"branch_attrs":{"mutations":{"nuc":["A6084G","G25019C"],"ORF1a":["D1940G"],"S":["D1153H"]},"labels":{"aa":"ORF1a: D1940G; S: D1153H","spike_mutations":"D1153H"}}},{"name":"KK.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1207645602407992"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.8.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.20635"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"KK.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":2.777778},"placement_prior":{"value":-5.517015046632762}},"branch_attrs":{"mutations":{"nuc":["T23005A"],"S":["N481K"]},"labels":{"aa":"S: N481K","spike_mutations":"N481K"}}}]},{"name":"NODE_0000581","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.5.102.1.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JD.1.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.4229452868220727}},"branch_attrs":{"mutations":{"nuc":["C19185T"]}},"children":[{"name":"JD.1.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"JD.1.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.958011006932731}},"branch_attrs":{"mutations":{"nuc":["C44T","T22304C"],"S":["Y248H"]},"labels":{"aa":"S: Y248H","spike_mutations":"Y248H"}}},{"name":"JD.1.1.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"JD.1.1.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.100416765157491}},"branch_attrs":{"mutations":{"nuc":["A1051G","G23311C"],"S":["E583D"]},"labels":{"aa":"S: E583D","spike_mutations":"E583D"}}},{"name":"JD.1.1.3","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1703405038644228"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.1261900000000002"},"designation_date":{"value":"2023-10-04"},"Nextclade_pango":{"value":"JD.1.1.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.506933138479992}},"branch_attrs":{"mutations":{"nuc":["G5015A","C22971A","A27283G"],"ORF1a":["V1584M"],"ORF6":["N28D"],"S":["T470N"]},"labels":{"aa":"ORF1a: V1584M; ORF6: N28D; S: T470N","spike_mutations":"T470N"}}},{"name":"JD.1.1.4","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"JD.1.1.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254557475577034}},"branch_attrs":{"mutations":{"nuc":["T5303C","A23223G","C27849T","C29245T","C29281T"],"ORF7b":["L32F"],"S":["E554G"]},"labels":{"aa":"ORF7b: L32F; S: E554G","spike_mutations":"E554G"}}},{"name":"JD.1.1.5","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"JD.1.1.5"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129571956210234}},"branch_attrs":{"mutations":{"nuc":["C44T","C1102T","A5608G","C15579T","A23592G"],"S":["Q677R"]},"labels":{"aa":"S: Q677R","spike_mutations":"Q677R"}}},{"name":"JD.1.1.6","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"JD.1.1.6"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094813448445842}},"branch_attrs":{"mutations":{"nuc":["T17599C","A22019G"],"S":["M153V"]},"labels":{"aa":"S: M153V","spike_mutations":"M153V"}}},{"name":"JD.1.1.7","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.102.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"JD.1.1.7"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.266785515774698}},"branch_attrs":{"mutations":{"nuc":["G20238T"],"ORF1b":["R2257S"]},"labels":{"aa":"ORF1b: R2257S"}}}]}]}]}]}]},{"name":"internal_db2d2241","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.5.70"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"XBB.1.5.70"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-4.779652510149184}},"branch_attrs":{"mutations":{"nuc":["C1973T","C7564T","T8737C","G12467T","C22624T","G22927T","T22928C","A25045G","C27059T","C28005T"],"ORF1a":["A4068S"],"ORF8":["P38S"],"S":["L455F","F456L"]},"labels":{"aa":"ORF1a: A4068S; ORF8: P38S; S: L455F, F456L","clade":"23G","spike_mutations":"L455F, F456L"}},"children":[{"name":"GK.10","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.10"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731678730296696}},"branch_attrs":{"mutations":{"nuc":["A16550G","A23223G","C27131T"],"ORF1b":["D1028G"],"S":["E554G"]},"labels":{"aa":"ORF1b: D1028G; S: E554G","spike_mutations":"E554G"}}},{"name":"GK.11","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.11"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.1506525162887895}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"GK.6","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.6"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094842958234737}},"branch_attrs":{"mutations":{"nuc":["A20304G","C21998A","C23230A","A23310C","G29440A"],"S":["Q146K","N556K","E583A"]},"labels":{"aa":"S: Q146K, N556K, E583A","spike_mutations":"Q146K, N556K, E583A"}}},{"name":"GK.7","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.7"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094842958234737}},"branch_attrs":{"mutations":{"nuc":["A28281G"],"N":["D3G"]},"labels":{"aa":"N: D3G"}}},{"name":"GK.9","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.9"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.38489124407204}},"branch_attrs":{"mutations":{"nuc":["C22482G"],"S":["T307S"]},"labels":{"aa":"S: T307S","spike_mutations":"T307S"}}},{"name":"XBB.1.5.70","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-05-22"},"Nextclade_pango":{"value":"XBB.1.5.70"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.779652510149184}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000583","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.5.70.5"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.5"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-6.1506525162887895}},"branch_attrs":{"mutations":{"nuc":["C7732T","G22104T"],"S":["G181V"]},"labels":{"aa":"S: G181V","spike_mutations":"G181V"}},"children":[{"name":"GK.5","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.5"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.1506525162887895}},"branch_attrs":{"mutations":{}}},{"name":"GK.5.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.5.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606695553219501}},"branch_attrs":{"mutations":{"nuc":["C15842T","G22100A"],"ORF1b":["T792I"],"S":["E180K"]},"labels":{"aa":"ORF1b: T792I; S: E180K","spike_mutations":"E180K"}}}]},{"name":"internal_e63e1170","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.5.70.8"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.8"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-5.711418784400828}},"branch_attrs":{"mutations":{"nuc":["G27364C"],"ORF6":["E55Q"]},"labels":{"aa":"ORF6: E55Q"}},"children":[{"name":"GK.8","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.8"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.711418784400828}},"branch_attrs":{"mutations":{}}},{"name":"GK.8.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.8.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606695553219501}},"branch_attrs":{"mutations":{"nuc":["A4929G","A6293G","C13019T","A22116T","C22986T"],"ORF1a":["N1555S","I2010V"],"S":["N185I","A475V"]},"labels":{"aa":"ORF1a: N1555S, I2010V; S: N185I, A475V","spike_mutations":"N185I, A475V"}}}]},{"name":"internal_ce4eb31f","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.5.70"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"XBB.1.5.70"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-6.246394657224282}},"branch_attrs":{"mutations":{"nuc":["C12469T"]}},"children":[{"name":"GK.4","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-09-17"},"Nextclade_pango":{"value":"GK.4"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.03269687472432}},"branch_attrs":{"mutations":{"nuc":["C8841T","C14396T","C18807T","C22986T"],"ORF1a":["T2859I"],"ORF1b":["T310I"],"S":["A475V"]},"labels":{"aa":"ORF1a: T2859I; ORF1b: T310I; S: A475V","spike_mutations":"A475V"}}},{"name":"internal_62a451c3","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.5.70.3"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.3"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-5.547579756907973}},"branch_attrs":{"mutations":{"nuc":["G2891T"],"ORF1a":["A876S"]},"labels":{"aa":"ORF1a: A876S"}},"children":[{"name":"GK.3","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-08-02"},"Nextclade_pango":{"value":"GK.3"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.547579756907973}},"branch_attrs":{"mutations":{}}},{"name":"GK.3.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-08-02"},"Nextclade_pango":{"value":"GK.3.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.349959673096876}},"branch_attrs":{"mutations":{"nuc":["C22986T"],"S":["A475V"]},"labels":{"aa":"S: A475V","spike_mutations":"A475V"}}},{"name":"GK.3.2","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"GK.3.2"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.287959899071384}},"branch_attrs":{"mutations":{"nuc":["C4189T","C21306T","C23277T","C26801T"],"S":["T572I"]},"labels":{"aa":"S: T572I","spike_mutations":"T572I"}}}]}]},{"name":"NODE_0000587","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.5.70"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"XBB.1.5.70"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-5.468404974730115}},"branch_attrs":{"mutations":{"nuc":["C23741T"]}},"children":[{"name":"GK.12","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1490866672931315"},"partiallyAliased":{"value":"XBB.1.5.70.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.4253100000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.12"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.7316194773486675}},"branch_attrs":{"mutations":{"nuc":["G8393A","G9652T","C9665T","C21789T","A22910G"],"ORF1a":["A2710T","M3129I","P3134S"],"S":["T76I","N450D"]},"labels":{"aa":"ORF1a: A2710T, M3129I, P3134S; S: T76I, N450D","spike_mutations":"T76I, N450D"}}},{"name":"internal_a33b4516","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.5.70.2"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.2"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-4.504074143167838}},"branch_attrs":{"mutations":{"nuc":["T2824C","G23093A"],"S":["V511I"]},"labels":{"aa":"S: V511I","spike_mutations":"V511I"}},"children":[{"name":"GK.2","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.89509"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"GK.2"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.504074143167838}},"branch_attrs":{"mutations":{}}},{"name":"GK.2.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.89509"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"GK.2.2"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.455440948142945}},"branch_attrs":{"mutations":{"nuc":["G23224T"],"S":["E554D"]},"labels":{"aa":"S: E554D","spike_mutations":"E554D"}}},{"name":"GK.2.3","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.3430624749820808"},"partiallyAliased":{"value":"XBB.1.5.70.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.8981300000000001"},"designation_date":{"value":"2023-09-17"},"Nextclade_pango":{"value":"GK.2.3"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.009216402616016}},"branch_attrs":{"mutations":{"nuc":["G16236A","A22629C","C29870A"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}}},{"name":"GK.2.4","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.3430624749820808"},"partiallyAliased":{"value":"XBB.1.5.70.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.8981300000000001"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"GK.2.4"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.30568777722153}},"branch_attrs":{"mutations":{"nuc":["T2C","T10204C","C21781T","A22629C"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}}},{"name":"internal_5681d944","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.5.70.2.1"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.2.1"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-4.324191084972823}},"branch_attrs":{"mutations":{"nuc":["C2135A","T11187C","C15755G"],"ORF1a":["L624I","L3641S"],"ORF1b":["S763C"]},"labels":{"aa":"ORF1a: L624I, L3641S; ORF1b: S763C"}},"children":[{"name":"GK.2.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.89509"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GK.2.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.324191084972823}},"branch_attrs":{"mutations":{}}},{"name":"GK.2.1.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.89509"},"designation_date":{"value":"2023-09-24"},"Nextclade_pango":{"value":"GK.2.1.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.270927380214483}},"branch_attrs":{"mutations":{"nuc":["G463A","C25046T"],"S":["P1162S"]},"labels":{"aa":"S: P1162S","spike_mutations":"P1162S"}}}]}]}]},{"name":"internal_3ae12761","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.5.70.1"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.1"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-4.438927520613053}},"branch_attrs":{"mutations":{"nuc":["C23673T","C25658T","C28657T"],"ORF3a":["T89I"],"S":["S704L"]},"labels":{"aa":"ORF3a: T89I; S: S704L","spike_mutations":"S704L"}},"children":[{"name":"GK.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-06-06"},"Nextclade_pango":{"value":"GK.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.438927520613053}},"branch_attrs":{"mutations":{}}},{"name":"GK.1.10","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"GK.1.10"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847064419894895}},"branch_attrs":{"mutations":{"nuc":["A1982G","T8167C","C12651T","C28087T","C28567T"],"ORF1a":["I573V","T4129I"],"ORF8":["A65V"],"ORF9b":["T95M"]},"labels":{"aa":"ORF1a: I573V, T4129I; ORF8: A65V; ORF9b: T95M"}}},{"name":"GK.1.3","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-07-13"},"Nextclade_pango":{"value":"GK.1.3"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.30568777722153}},"branch_attrs":{"mutations":{"nuc":["A1124G","A2163C","A16856G"],"ORF1a":["R287G","E633A"],"ORF1b":["D1130G"]},"labels":{"aa":"ORF1a: R287G, E633A; ORF1b: D1130G"}}},{"name":"GK.1.4","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.5.70.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"GK.1.4"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363676549891613}},"branch_attrs":{"mutations":{"nuc":["C7401T","C21855T","A22995G"],"ORF1a":["A2379V"],"S":["S98F","K478R"]},"labels":{"aa":"ORF1a: A2379V; S: S98F, K478R","spike_mutations":"S98F, K478R"}}},{"name":"GK.1.5","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.5"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208782208283096}},"branch_attrs":{"mutations":{"nuc":["C5055T","C22120A"],"ORF1a":["T1597I"],"S":["F186L"]},"labels":{"aa":"ORF1a: T1597I; S: F186L","spike_mutations":"F186L"}}},{"name":"GK.1.7","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.7"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.455440948142945}},"branch_attrs":{"mutations":{"nuc":["T44C","T11695C","C22120A"],"S":["F186L"]},"labels":{"aa":"S: F186L","spike_mutations":"F186L"}}},{"name":"GK.1.9","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.9"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.12947062175373}},"branch_attrs":{"mutations":{"nuc":["C17010T"]}}},{"name":"internal_a28bdb05","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.5.70.1.1"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.1.1"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-3.819042700789191}},"branch_attrs":{"mutations":{"nuc":["C23280T","C26735T"],"S":["T573I"]},"labels":{"aa":"S: T573I","spike_mutations":"T573I"}},"children":[{"name":"GK.1.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-07-13"},"Nextclade_pango":{"value":"GK.1.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.819042700789191}},"branch_attrs":{"mutations":{}}},{"name":"GK.1.1.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.1.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.146843599579181}},"branch_attrs":{"mutations":{"nuc":["C28432T"],"ORF9b":["S50L"]},"labels":{"aa":"ORF9b: S50L"}}}]},{"name":"internal_d742ba8f","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.1.5.70.1.11"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.1.11"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-5.606695553219501}},"branch_attrs":{"mutations":{"nuc":["C1191T","T3766C","C22986T","A25725G"],"ORF1a":["P309L"],"S":["A475V"]},"labels":{"aa":"ORF1a: P309L; S: A475V","spike_mutations":"A475V"}},"children":[{"name":"GK.1.11","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"GK.1.11"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606695553219501}},"branch_attrs":{"mutations":{}}},{"name":"GK.1.11.1","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.1.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"GK.1.11.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0.694444},"placement_prior":{"value":-5.907681112961623}},"branch_attrs":{"mutations":{"nuc":["A7385C","G18832A","A21764G"],"ORF1a":["M2374L"],"ORF1b":["G1789S"],"S":["I68V"]},"labels":{"aa":"ORF1a: M2374L; ORF1b: G1789S; S: I68V","spike_mutations":"I68V"}}}]},{"name":"internal_a6b5bb0b","node_attrs":{"div":45,"partiallyAliased":{"value":"XBB.1.5.70.1.2"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.1.2"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-5.514158874240152}},"branch_attrs":{"mutations":{"nuc":["A22115G"],"S":["N185D"]},"labels":{"aa":"S: N185D","spike_mutations":"N185D"}},"children":[{"name":"GK.1.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-07-13"},"Nextclade_pango":{"value":"GK.1.2"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.514158874240152}},"branch_attrs":{"mutations":{}}},{"name":"GK.1.2.1","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.2.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.866369223770647}},"branch_attrs":{"mutations":{"nuc":["A705G","C4586T","C4810G","G8039T","G8408A","C12789T","C17718T","C17745A","C18693A","T21802C","C22986T"],"ORF1a":["D147G","D2592Y","V2715I","T4175I"],"ORF1b":["N1426K"],"S":["A475V"]},"labels":{"aa":"ORF1a: D147G, D2592Y, V2715I, T4175I; ORF1b: N1426K; S: A475V","spike_mutations":"A475V"}}}]},{"name":"internal_3eae3f29","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.5.70.1.6"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.1.6"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-5.266771615786858}},"branch_attrs":{"mutations":{"nuc":["C853T","G25540A"],"ORF3a":["V50I"]},"labels":{"aa":"ORF3a: V50I"}},"children":[{"name":"GK.1.6","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.5.70.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.6"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.266771615786858}},"branch_attrs":{"mutations":{}}},{"name":"GK.1.6.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.6.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978340606648043}},"branch_attrs":{"mutations":{"nuc":["A605G","C22564T","C22986T"],"ORF1a":["I114V"],"S":["A475V"]},"labels":{"aa":"ORF1a: I114V; S: A475V","spike_mutations":"A475V"}}}]},{"name":"internal_34743931","node_attrs":{"div":52,"partiallyAliased":{"value":"XBB.1.5.70.1.8"},"clade_membership":{"value":"23G"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23G (XBB.1.5.70)"},"Nextclade_pango":{"value":"GK.1.8"},"clade_nextstrain":{"value":"23G"},"placement_prior":{"value":-4.696911154195902}},"branch_attrs":{"mutations":{"nuc":["C311T","A5608G","G6884A","C6906T","C18120T","C22986T","G23222A","T25370C"],"ORF1a":["L16F","G2207S","S2214L"],"S":["A475V","E554K"]},"labels":{"aa":"ORF1a: L16F, G2207S, S2214L; S: A475V, E554K","spike_mutations":"A475V, E554K"}},"children":[{"name":"GK.1.8","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"GK.1.8"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.696911154195902}},"branch_attrs":{"mutations":{}}},{"name":"GK.1.8.1","node_attrs":{"div":57,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.5.70.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23G"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23G (XBB.1.5.70)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"GK.1.8.1"},"clade_nextstrain":{"value":"23G"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208622250419278}},"branch_attrs":{"mutations":{"nuc":["C6401T","T20733C","A22122T","G22226C","G25793A"],"ORF1a":["P2046S"],"ORF3a":["R134H"],"S":["K187I","A222P"]},"labels":{"aa":"ORF1a: P2046S; ORF3a: R134H; S: K187I, A222P","spike_mutations":"K187I, A222P"}}}]}]}]},{"name":"NODE_0000596","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.5"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-2.4311947991263403}},"branch_attrs":{"mutations":{"nuc":["T10204C"]}},"children":[{"name":"XBB.1.5.106","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.106"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-17"},"Nextclade_pango":{"value":"XBB.1.5.106"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.242242251565571}},"branch_attrs":{"mutations":{"nuc":["T44C","G347A","G10890A","C23430T"],"ORF1a":["V28I","R3542H"],"S":["A623V"]},"labels":{"aa":"ORF1a: V28I, R3542H; S: A623V","spike_mutations":"A623V"}}},{"name":"XBB.1.5.19","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.1.5.19"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0141758633941835}},"branch_attrs":{"mutations":{"nuc":["C13981T"],"ORF1b":["R172C"]},"labels":{"aa":"ORF1b: R172C"}}},{"name":"XBB.1.5.20","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.1.5.20"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6417650263456722}},"branch_attrs":{"mutations":{"nuc":["C9532T"]}}},{"name":"XBB.1.5.25","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-18"},"Nextclade_pango":{"value":"XBB.1.5.25"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.093356666108784}},"branch_attrs":{"mutations":{"nuc":["T44C","A21852C"],"S":["K97T"]},"labels":{"aa":"S: K97T","spike_mutations":"K97T"}}},{"name":"XBB.1.5.27","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"XBB.1.5.27"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.605529977551606}},"branch_attrs":{"mutations":{"nuc":["A3309G","T11431C","A22995G"],"ORF1a":["E1015G"],"S":["K478R"]},"labels":{"aa":"ORF1a: E1015G; S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.32","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-24"},"Nextclade_pango":{"value":"XBB.1.5.32"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.6874240841167514}},"branch_attrs":{"mutations":{"nuc":["C8733T"],"ORF1a":["T2823I"]},"labels":{"aa":"ORF1a: T2823I"}}},{"name":"XBB.1.5.37","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-27"},"Nextclade_pango":{"value":"XBB.1.5.37"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5875064279990743}},"branch_attrs":{"mutations":{"nuc":["A24696G"],"S":["K1045R"]},"labels":{"aa":"S: K1045R","spike_mutations":"K1045R"}}},{"name":"XBB.1.5.5","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.5.5"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.114873791718903}},"branch_attrs":{"mutations":{"nuc":["C7002T","A25104T"],"ORF1a":["S2246L"],"S":["K1181I"]},"labels":{"aa":"ORF1a: S2246L; S: K1181I","spike_mutations":"K1181I"}}},{"name":"XBB.1.5.56","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.56"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"XBB.1.5.56"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.300060197121349}},"branch_attrs":{"mutations":{"nuc":["G24116T"],"S":["A852S"]},"labels":{"aa":"S: A852S","spike_mutations":"A852S"}}},{"name":"XBB.1.5.6","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.5.6"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.582616433776832}},"branch_attrs":{"mutations":{"nuc":["G24416A"],"S":["V952I"]},"labels":{"aa":"S: V952I","spike_mutations":"V952I"}}},{"name":"XBB.1.5.60","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.60"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.60"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.447002874697594}},"branch_attrs":{"mutations":{"nuc":["C6582T","G22093T"],"ORF1a":["T2106I"],"S":["M177I"]},"labels":{"aa":"ORF1a: T2106I; S: M177I","spike_mutations":"M177I"}}},{"name":"XBB.1.5.61","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.61"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.61"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.096598669445683}},"branch_attrs":{"mutations":{"nuc":["T11536C","C16887T"]}}},{"name":"XBB.1.5.65","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.65"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.5.65"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8420413607542425}},"branch_attrs":{"mutations":{"nuc":["C583T"]}}},{"name":"XBB.1.5.72","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.72"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-31"},"Nextclade_pango":{"value":"XBB.1.5.72"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8148273432669098}},"branch_attrs":{"mutations":{"nuc":["G1598A","T9823C","T22928C","C25728T"],"ORF1a":["G445S"],"S":["F456L"]},"labels":{"aa":"ORF1a: G445S; S: F456L","spike_mutations":"F456L"}}},{"name":"XBB.1.5.74","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9818942134369364"},"partiallyAliased":{"value":"XBB.1.5.74"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.9630099999999999"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.74"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.724450724554131}},"branch_attrs":{"mutations":{"nuc":["T44C","C835T","C4391A","G15649A","A22947G","C27925T"],"ORF1b":["V728I"],"ORF8":["T11I"],"S":["K462R"]},"labels":{"aa":"ORF1b: V728I; ORF8: T11I; S: K462R","spike_mutations":"K462R"}}},{"name":"XBB.1.5.76","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.76"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.76"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.027490270474216}},"branch_attrs":{"mutations":{"nuc":["T44C","A11351G"],"ORF1a":["T3696A"]},"labels":{"aa":"ORF1a: T3696A"}}},{"name":"XBB.1.5.78","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.78"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.78"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.247713622259027}},"branch_attrs":{"mutations":{"nuc":["A1643G"],"ORF1a":["N460D"]},"labels":{"aa":"ORF1a: N460D"}}},{"name":"XBB.1.5.8","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.5.8"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.517443661782843}},"branch_attrs":{"mutations":{"nuc":["G28302A"],"N":["R10Q"],"ORF9b":["E7K"]},"labels":{"aa":"N: R10Q; ORF9b: E7K"}}},{"name":"XBB.1.5.81","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.81"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.81"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.595221185504727}},"branch_attrs":{"mutations":{"nuc":["G4657A","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.83","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.83"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBB.1.5.83"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.499590066154016}},"branch_attrs":{"mutations":{"nuc":["T44C","A10624G"]}}},{"name":"XBB.1.5.84","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.84"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"XBB.1.5.84"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2827960195750645}},"branch_attrs":{"mutations":{"nuc":["G22093A"],"S":["M177I"]},"labels":{"aa":"S: M177I","spike_mutations":"M177I"}}},{"name":"XBB.1.5.88","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.88"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"XBB.1.5.88"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.431487007043382}},"branch_attrs":{"mutations":{"nuc":["C2299T"]}}},{"name":"XBB.1.5.89","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.89"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"XBB.1.5.89"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777415427898098}},"branch_attrs":{"mutations":{"nuc":["G8872T","A22995G","A23223C","C27752T"],"ORF1a":["L2869F"],"ORF7a":["T120I"],"S":["K478R","E554A"]},"labels":{"aa":"ORF1a: L2869F; ORF7a: T120I; S: K478R, E554A","spike_mutations":"K478R, E554A"}}},{"name":"XBB.1.5.9","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-10"},"Nextclade_pango":{"value":"XBB.1.5.9"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.162341676976096}},"branch_attrs":{"mutations":{"nuc":["C29253T"],"N":["S327L"]},"labels":{"aa":"N: S327L"}}},{"name":"XBB.1.5.90","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.90"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"XBB.1.5.90"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.58554646199692}},"branch_attrs":{"mutations":{"nuc":["C10615T","T19284C","C20402T","C23423T","C25324T"],"ORF1b":["S2312L"],"S":["P621S"]},"labels":{"aa":"ORF1b: S2312L; S: P621S","spike_mutations":"P621S"}}},{"name":"XBB.1.5.91","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.91"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"XBB.1.5.91"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.24935467964987}},"branch_attrs":{"mutations":{"nuc":["C23423T"],"S":["P621S"]},"labels":{"aa":"S: P621S","spike_mutations":"P621S"}}},{"name":"XBB.1.5.94","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.94"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"XBB.1.5.94"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.289211058820356}},"branch_attrs":{"mutations":{"nuc":["G23401T","T25461C"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}}},{"name":"XBB.1.5.96","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.96"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"XBB.1.5.96"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.155383982480323}},"branch_attrs":{"mutations":{"nuc":["C28603T"]}}},{"name":"NODE_0000597","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.17"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.17"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.8190993018168378}},"branch_attrs":{"mutations":{"nuc":["C23635T"]}},"children":[{"name":"FH.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.17.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-27"},"Nextclade_pango":{"value":"FH.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.675198695219777}},"branch_attrs":{"mutations":{"nuc":["C4633T","C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"XBB.1.5.17","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.1.5.17"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8190993018168378}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000598","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.5.42"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.42"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.091914013760936}},"branch_attrs":{"mutations":{"nuc":["A22405T","C29095T","C29870A"],"S":["E281D"]},"labels":{"aa":"S: E281D","spike_mutations":"E281D"}},"children":[{"name":"GR.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.42.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.83085"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"GR.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.168808814976981}},"branch_attrs":{"mutations":{"nuc":["C22895T"],"S":["P445S"]},"labels":{"aa":"S: P445S","spike_mutations":"P445S"}}},{"name":"XBB.1.5.42","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.42"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XBB.1.5.42"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.091914013760936}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000599","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.5.41"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.41"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.343422007932655}},"branch_attrs":{"mutations":{"nuc":["C8818T","C10036T","G18583A","C23123A","G23876A"],"ORF1b":["V1706I"],"S":["P521T","V772I"]},"labels":{"aa":"ORF1b: V1706I; S: P521T, V772I","spike_mutations":"P521T, V772I"}},"children":[{"name":"GU.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9170551495225012"},"partiallyAliased":{"value":"XBB.1.5.41.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.83156"},"designation_date":{"value":"2023-06-20"},"Nextclade_pango":{"value":"GU.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.685904397362405}},"branch_attrs":{"mutations":{"nuc":["T16203C","A23004G"],"S":["N481S"]},"labels":{"aa":"S: N481S","spike_mutations":"N481S"}}},{"name":"XBB.1.5.41","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9100655380041298"},"partiallyAliased":{"value":"XBB.1.5.41"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.93473"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XBB.1.5.41"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.343422007932655}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_56c7461f","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.48"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.48"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.175331860600955}},"branch_attrs":{"mutations":{"nuc":["A24730T"]}},"children":[{"name":"GV.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.48.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-20"},"Nextclade_pango":{"value":"GV.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.175492062992188}},"branch_attrs":{"mutations":{"nuc":["A22995G","T27810C"],"ORF7b":["F19L"],"S":["K478R"]},"labels":{"aa":"ORF7b: F19L; S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.48","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.48"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-25"},"Nextclade_pango":{"value":"XBB.1.5.48"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.175331860600955}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000601","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.5.103"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.103"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.152221268725891}},"branch_attrs":{"mutations":{"nuc":["T44C","C4575T","T21357C","A22101-","A22102-","G22103-","G22104-","A22105-","A22106-","A22107-","A22108-","G22109-","A22110-","G22111-","G22112-","G22113-","T22114-","A22115-","T22928C","T27878G"],"ORF1a":["T1437I"],"ORF7b":["C41W"],"S":["E180-","G181-","K182-","E183-","G184-","N185D","F456L"]},"labels":{"aa":"ORF1a: T1437I; ORF7b: C41W; S: E180-, G181-, K182-, E183-, G184-, N185D, F456L","spike_mutations":"E180-, G181-, K182-, E183-, G184-, N185D, F456L"}},"children":[{"name":"KA.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":18},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.103.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"KA.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.137796784225639}},"branch_attrs":{"mutations":{"nuc":["A2389G","G23222A"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"XBB.1.5.103","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":18},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.103"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"XBB.1.5.103"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.152221268725891}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_3ff58fb3","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.46"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.46"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.2351188313369015}},"branch_attrs":{"mutations":{"nuc":["C5770T","C15279T"]}},"children":[{"name":"GB.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9209379558325088"},"partiallyAliased":{"value":"XBB.1.5.46.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.9350799999999999"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"GB.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.290151379436284}},"branch_attrs":{"mutations":{"nuc":["C16338T","C23114G","G28077T","T28297C"],"ORF8":["V62L"],"ORF9b":["I5T"],"S":["L518V"]},"labels":{"aa":"ORF8: V62L; ORF9b: I5T; S: L518V","spike_mutations":"L518V"}}},{"name":"GB.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.46.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"GB.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.930016836471855}},"branch_attrs":{"mutations":{"nuc":["G4656A","G8171A","C21622T","A22995G"],"ORF1a":["R1464Q","A2636T"],"S":["K478R"]},"labels":{"aa":"ORF1a: R1464Q, A2636T; S: K478R","spike_mutations":"K478R"}}},{"name":"XBB.1.5.46","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.46"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-23"},"Nextclade_pango":{"value":"XBB.1.5.46"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2351188313369015}},"branch_attrs":{"mutations":{}}}]},{"name":"internal_451003c3","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.77"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.77"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.063481527027435}},"branch_attrs":{"mutations":{"nuc":["T18732C"]}},"children":[{"name":"XBB.1.5.77","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.77"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"XBB.1.5.77"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.063481527027435}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000604","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.5.77.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"HR.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.571848347518148}},"branch_attrs":{"mutations":{"nuc":["C679T","G1820A","G10364A","C12534T","C16575T","A22995G","C27005T","C28567T","A29147G","T29515A"],"N":["I292V"],"ORF1a":["G519S","V3367I","T4090I"],"ORF9b":["T95M"],"S":["K478R"]},"labels":{"aa":"N: I292V; ORF1a: G519S, V3367I, T4090I; ORF9b: T95M; S: K478R","spike_mutations":"K478R"}},"children":[{"name":"HR.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.77.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"HR.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.571848347518148}},"branch_attrs":{"mutations":{}}},{"name":"HR.1.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.77.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"HR.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.681583190332735}},"branch_attrs":{"mutations":{"nuc":["C3411T","G9203A","T15717C","A22474C","C27881T"],"ORF1a":["A1049V","D2980N"],"S":["K304N"]},"labels":{"aa":"ORF1a: A1049V, D2980N; S: K304N","spike_mutations":"K304N"}}}]}]},{"name":"NODE_0000605","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.49"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.49"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.7750949594181846}},"branch_attrs":{"mutations":{"nuc":["T6886C"]}},"children":[{"name":"HT.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.49.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"HT.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.577913220178324}},"branch_attrs":{"mutations":{"nuc":["T4798C","A22005C"],"S":["N148T"]},"labels":{"aa":"S: N148T","spike_mutations":"N148T"}}},{"name":"HT.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.49.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"HT.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.230741138063229}},"branch_attrs":{"mutations":{"nuc":["C21714T"],"S":["T51I"]},"labels":{"aa":"S: T51I","spike_mutations":"T51I"}}},{"name":"XBB.1.5.49","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.49"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-25"},"Nextclade_pango":{"value":"XBB.1.5.49"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7750949594181846}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000606","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.5.53"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.53"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.963211006929034}},"branch_attrs":{"mutations":{"nuc":["C6031T","T21980A","C22498A","G22770A","C23306T"],"S":["F140I","R403K","L582F"]},"labels":{"aa":"S: F140I, R403K, L582F","spike_mutations":"F140I, R403K, L582F"}},"children":[{"name":"XBB.1.5.53","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9206657740988851"},"partiallyAliased":{"value":"XBB.1.5.53"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.74111"},"designation_date":{"value":"2023-04-26"},"Nextclade_pango":{"value":"XBB.1.5.53"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.963211006929034}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000607","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.5.53.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JB.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-6.3278096946324025}},"branch_attrs":{"mutations":{"nuc":["A22005C"],"S":["N148T"]},"labels":{"aa":"S: N148T","spike_mutations":"N148T"}},"children":[{"name":"JB.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9206657740988851"},"partiallyAliased":{"value":"XBB.1.5.53.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.74111"},"designation_date":{"value":"2023-08-10"},"Nextclade_pango":{"value":"JB.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.3278096946324025}},"branch_attrs":{"mutations":{}}},{"name":"JB.1.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9228264978920351"},"partiallyAliased":{"value":"XBB.1.5.53.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.5945"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"JB.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-10}},"branch_attrs":{"mutations":{"nuc":["T1576C","C1912T","C4993T","C5869T","C6539T","C15315T","G16221A","A22995G","T25580C","A28349T"],"N":["S26C"],"ORF1a":["H2092Y"],"ORF3a":["I63T"],"S":["K478R"]},"labels":{"aa":"N: S26C; ORF1a: H2092Y; ORF3a: I63T; S: K478R","spike_mutations":"K478R"}}}]},{"name":"NODE_0000608","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.5.53.2"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"JB.2"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.905537107920086}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"JB.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9228264978920351"},"partiallyAliased":{"value":"XBB.1.5.53.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.5945"},"designation_date":{"value":"2023-08-10"},"Nextclade_pango":{"value":"JB.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.905537107920086}},"branch_attrs":{"mutations":{}}},{"name":"JB.2.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9228264978920351"},"partiallyAliased":{"value":"XBB.1.5.53.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.5945"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"JB.2.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606739993688397}},"branch_attrs":{"mutations":{"nuc":["A10333G","C22295T","G23224T"],"S":["H245Y","E554D"]},"labels":{"aa":"S: H245Y, E554D","spike_mutations":"H245Y, E554D"}}}]}]},{"name":"internal_d33f4c5d","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.39"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.39"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.974770267598509}},"branch_attrs":{"mutations":{"nuc":["T11316C"],"ORF1a":["M3684T"]},"labels":{"aa":"ORF1a: M3684T"}},"children":[{"name":"FT.4","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.39.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FT.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.311910826314161}},"branch_attrs":{"mutations":{"nuc":["T44C","G22100C"],"S":["E180Q"]},"labels":{"aa":"S: E180Q","spike_mutations":"E180Q"}}},{"name":"XBB.1.5.39","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.39"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-27"},"Nextclade_pango":{"value":"XBB.1.5.39"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.974770267598509}},"branch_attrs":{"mutations":{}}},{"name":"internal_cc13afc8","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.39"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.39"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.333460009799464}},"branch_attrs":{"mutations":{"nuc":["C1878T"],"ORF1a":["S538L"]},"labels":{"aa":"ORF1a: S538L"}},"children":[{"name":"FT.1","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.39.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FT.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.512314166616726}},"branch_attrs":{"mutations":{"nuc":["A22151G"],"S":["I197V"]},"labels":{"aa":"S: I197V","spike_mutations":"I197V"}}},{"name":"FT.2","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.39.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FT.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.279315014519444}},"branch_attrs":{"mutations":{"nuc":["A21390G","G24697T"],"S":["K1045N"]},"labels":{"aa":"S: K1045N","spike_mutations":"K1045N"}}}]},{"name":"internal_747c613f","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.39.3"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"FT.3"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.085935141165295}},"branch_attrs":{"mutations":{"nuc":["G21718T"],"S":["Q52H"]},"labels":{"aa":"S: Q52H","spike_mutations":"Q52H"}},"children":[{"name":"FT.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.39.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FT.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.085935141165295}},"branch_attrs":{"mutations":{}}},{"name":"internal_37080ddf","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.5.39.3.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"FT.3.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.481696002959377}},"branch_attrs":{"mutations":{"nuc":["C6628T","A18366G","A22995G","G25064C"],"S":["K478R","D1168H"]},"labels":{"aa":"S: K478R, D1168H","spike_mutations":"K478R, D1168H"}},"children":[{"name":"FT.3.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.5.39.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FT.3.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.481696002959377}},"branch_attrs":{"mutations":{}}},{"name":"FT.3.1.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0976777377913507"},"partiallyAliased":{"value":"XBB.1.5.39.3.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.74638"},"designation_date":{"value":"2023-07-27"},"Nextclade_pango":{"value":"FT.3.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.726861339347546}},"branch_attrs":{"mutations":{"nuc":["G22604T"],"S":["A348S"]},"labels":{"aa":"S: A348S","spike_mutations":"A348S"}}}]}]}]},{"name":"NODE_0000613","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.5.15"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"XBB.1.5.15"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-3.8298651603189136}},"branch_attrs":{"mutations":{"nuc":["G15957T"]}},"children":[{"name":"FD.3","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0953036454007203"},"partiallyAliased":{"value":"XBB.1.5.15.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.89299"},"designation_date":{"value":"2023-05-03"},"Nextclade_pango":{"value":"FD.3"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.99725107376839}},"branch_attrs":{"mutations":{"nuc":["T8503C","G22604T"],"S":["A348S"]},"labels":{"aa":"S: A348S","spike_mutations":"A348S"}}},{"name":"XBB.1.5.15","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-26"},"Nextclade_pango":{"value":"XBB.1.5.15"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8298651603189136}},"branch_attrs":{"mutations":{}}},{"name":"internal_94b75e18","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.5.15.1"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"FD.1"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.215345707079435}},"branch_attrs":{"mutations":{"nuc":["T44C","C4683T","C4993T","C27689T","G27762T"],"ORF1a":["A1473V"],"ORF7a":["P99L"],"ORF7b":["E3*"]},"labels":{"aa":"ORF1a: A1473V; ORF7a: P99L; ORF7b: E3*"}},"children":[{"name":"FD.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FD.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.215345707079435}},"branch_attrs":{"mutations":{}}},{"name":"FD.1.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.15.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"FD.1.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.854498636422392}},"branch_attrs":{"mutations":{"nuc":["C12786T","T22928C"],"ORF1a":["T4174I"],"S":["F456L"]},"labels":{"aa":"ORF1a: T4174I; S: F456L","spike_mutations":"F456L"}}}]},{"name":"internal_07fb4e92","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.5.15.2"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"FD.2"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.014231722213626}},"branch_attrs":{"mutations":{"nuc":["G1820A","C21998A"],"ORF1a":["G519S"],"S":["Q146K"]},"labels":{"aa":"ORF1a: G519S; S: Q146K","spike_mutations":"Q146K"}},"children":[{"name":"FD.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.15.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-27"},"Nextclade_pango":{"value":"FD.2"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.014231722213626}},"branch_attrs":{"mutations":{}}},{"name":"FD.2.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.15.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-01"},"Nextclade_pango":{"value":"FD.2.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3622019504082195}},"branch_attrs":{"mutations":{"nuc":["T44C","G9329A","G26834A"],"ORF1a":["D3022N"]},"labels":{"aa":"ORF1a: D3022N"}}}]},{"name":"internal_1ee75ec0","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.15.4"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"FD.4"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-4.426195876923484}},"branch_attrs":{"mutations":{"nuc":["G12838T"],"ORF1a":["L4191F"]},"labels":{"aa":"ORF1a: L4191F"}},"children":[{"name":"FD.4","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.15.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"FD.4"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.426195876923484}},"branch_attrs":{"mutations":{}}},{"name":"FD.4.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.15.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"FD.4.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.555073664825837}},"branch_attrs":{"mutations":{"nuc":["C13329T","A21367T"],"ORF1a":["T4355I"],"ORF1b":["I2634F"]},"labels":{"aa":"ORF1a: T4355I; ORF1b: I2634F"}}}]},{"name":"NODE_0000617","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.5.15.5"},"clade_membership":{"value":"23A"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23A (XBB.1.5)"},"Nextclade_pango":{"value":"FD.5"},"clade_nextstrain":{"value":"23A"},"placement_prior":{"value":-5.222908043617289}},"branch_attrs":{"mutations":{"nuc":["C29580T"]}},"children":[{"name":"FD.5","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.5.15.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FD.5"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":65},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.222908043617289}},"branch_attrs":{"mutations":{}}},{"name":"FD.5.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.5.15.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23A"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23A (XBB.1.5)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FD.5.1"},"clade_nextstrain":{"value":"23A"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.731015289658948}},"branch_attrs":{"mutations":{"nuc":["T44C","C17304T","A22115G","T22928C"],"S":["N185D","F456L"]},"labels":{"aa":"S: N185D, F456L","spike_mutations":"N185D, F456L"}}}]}]}]}]}]},{"name":"internal_ORF9b_I5T","node_attrs":{"div":29,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.921171159421981}},"branch_attrs":{"mutations":{"nuc":["T28297C"],"ORF9b":["I5T"]},"labels":{"aa":"ORF9b: I5T"}},"children":[{"name":"XBB.1.25","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-20"},"Nextclade_pango":{"value":"XBB.1.25"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.180878083108515}},"branch_attrs":{"mutations":{"nuc":["G487T","C673T","-29759G"]}}},{"name":"XBB.1.26","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-20"},"Nextclade_pango":{"value":"XBB.1.26"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.4298665126215155}},"branch_attrs":{"mutations":{"nuc":["T10663C"]}}},{"name":"internal_XBB_1_22","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1.22"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.22"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.210195669810299}},"branch_attrs":{"mutations":{"nuc":["T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"XBB.1.22","node_attrs":{"div":30,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.22"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":66},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.210195669810299}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.22.3","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"XBB.1.22.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167391139161464}},"branch_attrs":{"mutations":{"nuc":["C10776T","C18979A"],"ORF1a":["P3504L"],"ORF1b":["H1838N"]},"labels":{"aa":"ORF1a: P3504L; ORF1b: H1838N"}}},{"name":"NODE_0000620","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.22.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.22.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.627101043527387}},"branch_attrs":{"mutations":{"nuc":["C11750T","A12316G","C15237T","A27507C"],"ORF1a":["L3829F"]},"labels":{"aa":"ORF1a: L3829F"}},"children":[{"name":"HU.2","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-28"},"Nextclade_pango":{"value":"HU.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["T44C","G336A","C17750T","C21789T","T22684C","A26126G"],"ORF1a":["R24H"],"ORF1b":["A1428V"],"ORF3a":["Q245R"],"S":["T76I"]},"labels":{"aa":"ORF1a: R24H; ORF1b: A1428V; ORF3a: Q245R; S: T76I","spike_mutations":"T76I"}}},{"name":"XBB.1.22.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.22.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.627101043527387}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000621","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.22.2.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"HU.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.810635465049565}},"branch_attrs":{"mutations":{"nuc":["C2881T","G23149T"],"S":["K529N"]},"labels":{"aa":"S: K529N","spike_mutations":"K529N"}},"children":[{"name":"HU.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9086525363672864"},"partiallyAliased":{"value":"XBB.1.22.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.86018"},"designation_date":{"value":"2023-07-27"},"Nextclade_pango":{"value":"HU.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.810635465049565}},"branch_attrs":{"mutations":{}}},{"name":"HU.1.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.933658973985891"},"partiallyAliased":{"value":"XBB.1.22.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.67693"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"HU.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810837519991311}},"branch_attrs":{"mutations":{"nuc":["A17910G","C18252T","T21644C","G22973C","T24850C"],"S":["Y28H","E471Q"]},"labels":{"aa":"S: Y28H, E471Q","spike_mutations":"Y28H, E471Q"}}}]}]},{"name":"internal_f7b45518","node_attrs":{"div":32,"partiallyAliased":{"value":"XBB.1.22.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.22.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.60881901525971}},"branch_attrs":{"mutations":{"nuc":["T44C","A22161G"],"S":["Y200C"]},"labels":{"aa":"S: Y200C","spike_mutations":"Y200C"}},"children":[{"name":"FY.9","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.9"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.024883558390084}},"branch_attrs":{"mutations":{"nuc":["C925A","G2265A","C23585A"],"ORF1a":["D220E","C667Y"],"S":["Q675K"]},"labels":{"aa":"ORF1a: D220E, C667Y; S: Q675K","spike_mutations":"Q675K"}}},{"name":"XBB.1.22.1","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.22.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.60881901525971}},"branch_attrs":{"mutations":{}}},{"name":"internal_510fd725","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.22.1.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.527222156330972}},"branch_attrs":{"mutations":{"nuc":["T16456C","T22152C"],"ORF1b":["S997P"],"S":["I197T"]},"labels":{"aa":"ORF1b: S997P; S: I197T","spike_mutations":"I197T"}},"children":[{"name":"FY.2","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-04"},"Nextclade_pango":{"value":"FY.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.527222156330972}},"branch_attrs":{"mutations":{}}},{"name":"FY.2.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FY.2.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.314846210416953}},"branch_attrs":{"mutations":{"nuc":["C5886T","C23613T","A28699G"],"ORF1a":["T1874I"],"S":["A684V"]},"labels":{"aa":"ORF1a: T1874I; S: A684V","spike_mutations":"A684V"}}}]},{"name":"internal_87efaafa","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.22.1.6"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.6"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.022638773376389}},"branch_attrs":{"mutations":{"nuc":["C2037T"],"ORF1a":["A591V"]},"labels":{"aa":"ORF1a: A591V"}},"children":[{"name":"FY.6","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FY.6"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.022638773376389}},"branch_attrs":{"mutations":{}}},{"name":"internal_40f1a96d","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.22.1.6"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.6"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.236125993053444}},"branch_attrs":{"mutations":{"nuc":["C44T","T17124C"]}},"children":[{"name":"FY.6.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.6.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.7316194773486675}},"branch_attrs":{"mutations":{"nuc":["A3500T","T6736C","C24378T","G27798T","G29543A"],"ORF1a":["T1079S"],"ORF7b":["A15S"],"S":["S939F"]},"labels":{"aa":"ORF1a: T1079S; ORF7b: A15S; S: S939F","spike_mutations":"S939F"}}},{"name":"FY.6.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.6.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36362174907267}},"branch_attrs":{"mutations":{"nuc":["C9693T","T11269C","G25699A"],"ORF1a":["A3143V"],"ORF3a":["A103T"]},"labels":{"aa":"ORF1a: A3143V; ORF3a: A103T"}}}]}]},{"name":"internal_6ee4f269","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.22.1.8"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.8"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.724679685179513}},"branch_attrs":{"mutations":{"nuc":["C23277T"],"S":["T572I"]},"labels":{"aa":"S: T572I","spike_mutations":"T572I"}},"children":[{"name":"FY.8","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.8"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.724679685179513}},"branch_attrs":{"mutations":{}}},{"name":"internal_d9f0425a","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.22.1.8.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.8.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["T4579A","C18511T","A22995G"],"ORF1b":["P1682S"],"S":["K478R"]},"labels":{"aa":"ORF1b: P1682S; S: K478R","spike_mutations":"K478R"}},"children":[{"name":"FY.8.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-11-30"},"Nextclade_pango":{"value":"FY.8.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{}}},{"name":"FY.8.1.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.22.1.8.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8926499999999999"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"FY.8.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606739993688397}},"branch_attrs":{"mutations":{"nuc":["C44T","G16912T","C23124A","C26681T","C29296T"],"ORF1b":["V1149L"],"S":["P521Q"]},"labels":{"aa":"ORF1b: V1149L; S: P521Q","spike_mutations":"P521Q"}}}]}]},{"name":"internal_cbbd3c8c","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.22.1.3"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.3"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.560801432547097}},"branch_attrs":{"mutations":{"nuc":["G2513A","C23191T"],"ORF1a":["E750K"]},"labels":{"aa":"ORF1a: E750K"}},"children":[{"name":"FY.3","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-04"},"Nextclade_pango":{"value":"FY.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.560801432547097}},"branch_attrs":{"mutations":{}}},{"name":"FY.3.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"FY.3.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8907339509113115}},"branch_attrs":{"mutations":{"nuc":["G4109T","C5544T","T22191C"],"ORF1a":["D1282Y","T1760I"],"S":["I210T"]},"labels":{"aa":"ORF1a: D1282Y, T1760I; S: I210T","spike_mutations":"I210T"}}},{"name":"FY.3.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"FY.3.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.243435390316952}},"branch_attrs":{"mutations":{"nuc":["A11556G"],"ORF1a":["E3764G"]},"labels":{"aa":"ORF1a: E3764G"}}},{"name":"FY.3.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"FY.3.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4843722691485945}},"branch_attrs":{"mutations":{"nuc":["C44T","G25534T"],"ORF3a":["V48F"]},"labels":{"aa":"ORF3a: V48F"}}}]},{"name":"internal_9c1b5374","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.22.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.22.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.90497190582317}},"branch_attrs":{"mutations":{"nuc":["A8374G","C25517T"],"ORF3a":["P42L"]},"labels":{"aa":"ORF3a: P42L"}},"children":[{"name":"FY.7","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FY.7"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["C11674T","T22246G","G23868C","C24442T","C25066A","A25974G","C27429T","C28603T"],"S":["D228E","G769A","D1168E"]},"labels":{"aa":"S: D228E, G769A, D1168E","spike_mutations":"D228E, G769A, D1168E"}}},{"name":"internal_c773bde4","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.22.1.4"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.4"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.978020940115946}},"branch_attrs":{"mutations":{"nuc":["T22913C"],"S":["Y451H"]},"labels":{"aa":"S: Y451H","spike_mutations":"Y451H"}},"children":[{"name":"FY.4","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9077457685050422"},"partiallyAliased":{"value":"XBB.1.22.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.80106"},"designation_date":{"value":"2023-05-04"},"Nextclade_pango":{"value":"FY.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.978020940115946}},"branch_attrs":{"mutations":{}}},{"name":"FY.4.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9077457685050422"},"partiallyAliased":{"value":"XBB.1.22.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.80106"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"FY.4.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.793805044376945}},"branch_attrs":{"mutations":{"nuc":["A6777T","C7417T","G20326A"],"ORF1a":["Y2171F"],"ORF1b":["V2287I"]},"labels":{"aa":"ORF1a: Y2171F; ORF1b: V2287I"}}},{"name":"internal_77ad61e0","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.22.1.4.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.4.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.077353723656775}},"branch_attrs":{"mutations":{"nuc":["T23042C"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}},"children":[{"name":"FY.4.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9284023746520719"},"partiallyAliased":{"value":"XBB.1.22.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.74983"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"FY.4.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.077353723656775}},"branch_attrs":{"mutations":{}}},{"name":"FY.4.1.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9284023746520719"},"partiallyAliased":{"value":"XBB.1.22.1.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.74983"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FY.4.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7882728290951935}},"branch_attrs":{"mutations":{"nuc":["C23673T"],"S":["S704L"]},"labels":{"aa":"S: S704L","spike_mutations":"S704L"}}},{"name":"FY.4.1.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9284023746520719"},"partiallyAliased":{"value":"XBB.1.22.1.4.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.74983"},"designation_date":{"value":"2023-09-06"},"Nextclade_pango":{"value":"FY.4.1.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.886553956660505}},"branch_attrs":{"mutations":{"nuc":["C9042T"],"ORF1a":["S2926F"]},"labels":{"aa":"ORF1a: S2926F"}}}]}]}]},{"name":"internal_4cac9310","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.22.1.5"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.5"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.043123281104051}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"FY.5","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"FY.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":67},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.043123281104051}},"branch_attrs":{"mutations":{}}},{"name":"internal_8688708a","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.22.1.5.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.5.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["C5312A","C23277T","T26921C"],"ORF1a":["L1683I"],"S":["T572I"]},"labels":{"aa":"ORF1a: L1683I; S: T572I","spike_mutations":"T572I"}},"children":[{"name":"FY.5.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.5.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{}}},{"name":"FY.5.1.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.5.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.907741919092542}},"branch_attrs":{"mutations":{"nuc":["A610T","G13313A","C21057T","G22021T","T22119C","G22302A"],"ORF1a":["V4350I"],"S":["M153I","F186S","S247N"]},"labels":{"aa":"ORF1a: V4350I; S: M153I, F186S, S247N","spike_mutations":"M153I, F186S, S247N"}}}]},{"name":"internal_abb9d504","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.22.1.5"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.5"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.764653852052601}},"branch_attrs":{"mutations":{"nuc":["A6019G"]}},"children":[{"name":"FY.5.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"FY.5.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["C44T","C22088T","G28300A"],"ORF9b":["S6N"],"S":["L176F"]},"labels":{"aa":"ORF9b: S6N; S: L176F","spike_mutations":"L176F"}}},{"name":"FY.5.3","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"FY.5.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.275681280196041}},"branch_attrs":{"mutations":{"nuc":["A802G","C22227T","C22978T","G29779T"],"S":["A222V"]},"labels":{"aa":"S: A222V","spike_mutations":"A222V"}}},{"name":"FY.5.4","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"FY.5.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208743846310869}},"branch_attrs":{"mutations":{"nuc":["G9290A","A12495G","C14016T","C18252T","C23277T"],"ORF1a":["D3009N","Y4077C"],"S":["T572I"]},"labels":{"aa":"ORF1a: D3009N, Y4077C; S: T572I","spike_mutations":"T572I"}}},{"name":"internal_ba034a15","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.22.1.5.5"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.5.5"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.16735626437147}},"branch_attrs":{"mutations":{"nuc":["G8653C","T9616C","T18408C"],"ORF1a":["M2796I"]},"labels":{"aa":"ORF1a: M2796I"}},"children":[{"name":"FY.5.5","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"FY.5.5"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16735626437147}},"branch_attrs":{"mutations":{}}},{"name":"FY.5.5.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.5.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"FY.5.5.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.71742018112936}},"branch_attrs":{"mutations":{"nuc":["C23277T"],"S":["T572I"]},"labels":{"aa":"S: T572I","spike_mutations":"T572I"}}}]}]}]},{"name":"internal_eaa00801","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.22.1.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.0240096227541065}},"branch_attrs":{"mutations":{"nuc":["G18811A"],"ORF1b":["D1782N"]},"labels":{"aa":"ORF1b: D1782N"}},"children":[{"name":"FY.1","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-04"},"Nextclade_pango":{"value":"FY.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.0240096227541065}},"branch_attrs":{"mutations":{}}},{"name":"FY.1.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"FY.1.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.842156312091944}},"branch_attrs":{"mutations":{"nuc":["G21809T"],"S":["A83S"]},"labels":{"aa":"S: A83S","spike_mutations":"A83S"}}},{"name":"FY.1.3","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"FY.1.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.347754562604154}},"branch_attrs":{"mutations":{"nuc":["C44T","G23311C"],"S":["E583D"]},"labels":{"aa":"S: E583D","spike_mutations":"E583D"}}},{"name":"internal_d4a15f8a","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.22.1.1.4"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.1.4"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-6.204076473695765}},"branch_attrs":{"mutations":{"nuc":["C44T","A19134G","C21552T","A22995G","A24813G","C25836T"],"S":["K478R","D1084G"]},"labels":{"aa":"S: K478R, D1084G","spike_mutations":"K478R, D1084G"}},"children":[{"name":"FY.1.4","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.1.4"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.204076473695765}},"branch_attrs":{"mutations":{}}},{"name":"FY.1.4.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.22.1.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-16"},"Nextclade_pango":{"value":"FY.1.4.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363676549891613}},"branch_attrs":{"mutations":{"nuc":["C3157A","T4846C","C18431T","T23268C","G29766T"],"ORF1b":["T1655I"],"S":["I569T"]},"labels":{"aa":"ORF1b: T1655I; S: I569T","spike_mutations":"I569T"}}}]},{"name":"NODE_0000638","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.22.1.1.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.1.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-5.216042133611422}},"branch_attrs":{"mutations":{"nuc":["C11575T","C14120T","C23277T"],"ORF1b":["P218L"],"S":["T572I"]},"labels":{"aa":"ORF1b: P218L; S: T572I","spike_mutations":"T572I"}},"children":[{"name":"FY.1.2","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"FY.1.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.216042133611422}},"branch_attrs":{"mutations":{}}},{"name":"FY.1.2.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FY.1.2.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.922484051220205}},"branch_attrs":{"mutations":{"nuc":["T4579A","C5055T","T13447A","G21753T","C21910T"],"ORF1a":["T1597I"],"S":["W64L"]},"labels":{"aa":"ORF1a: T1597I; S: W64L","spike_mutations":"W64L"}}},{"name":"NODE_0000639","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.22.1.1.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"FY.1.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.6405830876106435}},"branch_attrs":{"mutations":{"nuc":["A13947C"]}},"children":[{"name":"FY.1.2.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FY.1.2.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.907741919092542}},"branch_attrs":{"mutations":{"nuc":["G24947A","A28704G"],"N":["D144G"],"S":["V1129I"]},"labels":{"aa":"N: D144G; S: V1129I","spike_mutations":"V1129I"}}},{"name":"FY.1.2.3","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.22.1.1.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FY.1.2.3"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36362174907267}},"branch_attrs":{"mutations":{"nuc":["C3874T","C13225T","G22205C","C28153A","G28487A"],"N":["V72I"],"ORF8":["T87K"],"S":["D215H"]},"labels":{"aa":"N: V72I; ORF8: T87K; S: D215H","spike_mutations":"D215H"}}}]}]}]}]}]},{"name":"NODE_0000640","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.16"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-2.991282795158193}},"branch_attrs":{"mutations":{"nuc":["C11750T","C11956T","T12730A","A14856G","G18703T","A22101T","A22995G","T23018C","A28447G","C29386T"],"ORF1a":["L3829F"],"ORF1b":["D1746Y"],"ORF9b":["N55S"],"S":["E180V","K478R","S486P"]},"labels":{"aa":"ORF1a: L3829F; ORF1b: D1746Y; ORF9b: N55S; S: E180V, K478R, S486P","clade":"23B","spike_mutations":"E180V, K478R, S486P"}},"children":[{"name":"XBB.1.16","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-03-05"},"Nextclade_pango":{"value":"XBB.1.16"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-2.991282795158193}},"branch_attrs":{"mutations":{}}},{"name":"XBB.1.16.10","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"XBB.1.16.10"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.297321663876497}},"branch_attrs":{"mutations":{"nuc":["G28347A"],"N":["G25D"],"ORF9b":["A22T"]},"labels":{"aa":"N: G25D; ORF9b: A22T"}}},{"name":"XBB.1.16.11","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.16.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.78812"},"designation_date":{"value":"2023-06-14"},"Nextclade_pango":{"value":"XBB.1.16.11"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.2008859203328313}},"branch_attrs":{"mutations":{"nuc":["C23123A"],"S":["P521T"]},"labels":{"aa":"S: P521T","spike_mutations":"P521T"}}},{"name":"XBB.1.16.12","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"XBB.1.16.12"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.118885551132698}},"branch_attrs":{"mutations":{"nuc":["G21718T"],"S":["Q52H"]},"labels":{"aa":"S: Q52H","spike_mutations":"Q52H"}}},{"name":"XBB.1.16.14","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0230547715545306"},"partiallyAliased":{"value":"XBB.1.16.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.7388600000000002"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"XBB.1.16.14"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.413164068396838}},"branch_attrs":{"mutations":{"nuc":["A11782G","T22917A"],"S":["L452Q"]},"labels":{"aa":"S: L452Q","spike_mutations":"L452Q"}}},{"name":"XBB.1.16.16","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"XBB.1.16.16"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.363495187330068}},"branch_attrs":{"mutations":{"nuc":["G23401T","G29508A"],"N":["S412N"],"S":["Q613H"]},"labels":{"aa":"N: S412N; S: Q613H","spike_mutations":"Q613H"}}},{"name":"XBB.1.16.17","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"XBB.1.16.17"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.133565953867549}},"branch_attrs":{"mutations":{"nuc":["G23222A"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"XBB.1.16.18","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"XBB.1.16.18"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.218798435419359}},"branch_attrs":{"mutations":{"nuc":["C27509T"],"ORF7a":["T39I"]},"labels":{"aa":"ORF7a: T39I"}}},{"name":"XBB.1.16.19","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"XBB.1.16.19"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.190711937514136}},"branch_attrs":{"mutations":{"nuc":["G15982A"],"ORF1b":["V839I"]},"labels":{"aa":"ORF1b: V839I"}}},{"name":"XBB.1.16.20","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"XBB.1.16.20"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.136598331033585}},"branch_attrs":{"mutations":{"nuc":["C27847T"],"ORF7b":["S31L"]},"labels":{"aa":"ORF7b: S31L"}}},{"name":"XBB.1.16.21","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"XBB.1.16.21"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.2362719885598095}},"branch_attrs":{"mutations":{"nuc":["G12479A"],"ORF1a":["V4072I"]},"labels":{"aa":"ORF1a: V4072I"}}},{"name":"XBB.1.16.22","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"XBB.1.16.22"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.424940330266241}},"branch_attrs":{"mutations":{"nuc":["G26116C"],"ORF3a":["E242Q"]},"labels":{"aa":"ORF3a: E242Q"}}},{"name":"XBB.1.16.23","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"XBB.1.16.23"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.316070072284087}},"branch_attrs":{"mutations":{"nuc":["T11449C","A22472C"],"S":["K304Q"]},"labels":{"aa":"S: K304Q","spike_mutations":"K304Q"}}},{"name":"XBB.1.16.24","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.16.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.78812"},"designation_date":{"value":"2023-09-04"},"Nextclade_pango":{"value":"XBB.1.16.24"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094856632709521}},"branch_attrs":{"mutations":{"nuc":["T44C","C2508T","G3179A","A22106G","C23123A","G23222A","A25410G"],"ORF1a":["P748L","E972K"],"S":["K182E","P521T","E554K"]},"labels":{"aa":"ORF1a: P748L, E972K; S: K182E, P521T, E554K","spike_mutations":"K182E, P521T, E554K"}}},{"name":"XBB.1.16.25","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"XBB.1.16.25"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.562847765043968}},"branch_attrs":{"mutations":{"nuc":["A1793G","C16611T","A29221G"],"ORF1a":["K510E"]},"labels":{"aa":"ORF1a: K510E"}}},{"name":"XBB.1.16.26","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.16.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-11-12"},"Nextclade_pango":{"value":"XBB.1.16.26"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.241325994479798}},"branch_attrs":{"mutations":{"nuc":["G22927T","T22928C"],"S":["L455F","F456L"]},"labels":{"aa":"S: L455F, F456L","spike_mutations":"L455F, F456L"}}},{"name":"XBB.1.16.27","node_attrs":{"div":54,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.16.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"XBB.1.16.27"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.596016128296623}},"branch_attrs":{"mutations":{"nuc":["G3153A","A6399G","C7720T","T11081C","G11083T","G11930A","T12673C","T19065G","C20133T","T20484C","C20628T","T22928C","G23222A","T26171C","A28984G"],"ORF1a":["G963D","K2045R","A3889T"],"ORF3a":["M260T"],"S":["F456L","E554K"]},"labels":{"aa":"ORF1a: G963D, K2045R, A3889T; ORF3a: M260T; S: F456L, E554K","spike_mutations":"F456L, E554K"}}},{"name":"XBB.1.16.28","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.1.16.28"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.357541636297284}},"branch_attrs":{"mutations":{"nuc":["G3246A","T13518C","T17250G","G23401T","C23585A","T25251C"],"ORF1a":["S994N"],"S":["Q613H","Q675K","V1230A"]},"labels":{"aa":"ORF1a: S994N; S: Q613H, Q675K, V1230A","spike_mutations":"Q613H, Q675K, V1230A"}}},{"name":"XBB.1.16.3","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XBB.1.16.3"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.333261635596304}},"branch_attrs":{"mutations":{"nuc":["A2893C"]}}},{"name":"XBB.1.16.4","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-05"},"Nextclade_pango":{"value":"XBB.1.16.4"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4476956144420425}},"branch_attrs":{"mutations":{"nuc":["C23595T"],"S":["T678I"]},"labels":{"aa":"S: T678I","spike_mutations":"T678I"}}},{"name":"XBB.1.16.5","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"XBB.1.16.5"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.289898420341075}},"branch_attrs":{"mutations":{"nuc":["T44C","T9991C","C16332T"]}}},{"name":"XBB.1.16.7","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-25"},"Nextclade_pango":{"value":"XBB.1.16.7"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.357541636297284}},"branch_attrs":{"mutations":{"nuc":["T3533C","T12214C","T17154C","C23757T"],"ORF1a":["Y1090H"],"S":["T732I"]},"labels":{"aa":"ORF1a: Y1090H; S: T732I","spike_mutations":"T732I"}}},{"name":"XBB.1.16.8","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-26"},"Nextclade_pango":{"value":"XBB.1.16.8"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.084141409678959}},"branch_attrs":{"mutations":{"nuc":["C23757T"],"S":["T732I"]},"labels":{"aa":"S: T732I","spike_mutations":"T732I"}}},{"name":"XBB.1.16.9","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.16.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"XBB.1.16.9"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.081695186651551}},"branch_attrs":{"mutations":{"nuc":["C7764T","T22930G","T27591C"],"ORF1a":["S2500F"],"S":["F456L"]},"labels":{"aa":"ORF1a: S2500F; S: F456L","spike_mutations":"F456L"}}},{"name":"NODE_0000641","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.16.32"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16.32"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-5.897046123960604}},"branch_attrs":{"mutations":{"nuc":["C6541T","A8080G","A8425G","T21823C","T23030C"],"S":["S490P"]},"labels":{"aa":"S: S490P","spike_mutations":"S490P"}},"children":[{"name":"KJ.1","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.32.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.64385"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"KJ.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":44.444444},"placement_prior":{"value":-5.305709998024415}},"branch_attrs":{"mutations":{"nuc":["T44C","T5122C","C5241T","C6190T","C11494T","C23280T","A24994G","T27900C"],"ORF1a":["P1659L"],"ORF8":["F3L"],"S":["T573I"]},"labels":{"aa":"ORF1a: P1659L; ORF8: F3L; S: T573I","spike_mutations":"T573I"}}},{"name":"XBB.1.16.32","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.64385"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"XBB.1.16.32"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.897046123960604}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000642","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.16.15"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16.15"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-3.857906175512044}},"branch_attrs":{"mutations":{"nuc":["T10756C","T14067C","A22003T","C23123T","C27513T"],"S":["K147N","P521S"]},"labels":{"aa":"S: K147N, P521S","spike_mutations":"K147N, P521S"}},"children":[{"name":"JM.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.16.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-09-22"},"Nextclade_pango":{"value":"JM.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.681599865953379}},"branch_attrs":{"mutations":{"nuc":["G2059A","G21718T","A24019G","G29227T"],"ORF1a":["M598I"],"S":["Q52H"]},"labels":{"aa":"ORF1a: M598I; S: Q52H","spike_mutations":"Q52H"}}},{"name":"JM.2","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.16.15.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-09-22"},"Nextclade_pango":{"value":"JM.2"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.425849851750947}},"branch_attrs":{"mutations":{"nuc":["G21796T","C22480T","G25135A"],"S":["R78S"]},"labels":{"aa":"S: R78S","spike_mutations":"R78S"}}},{"name":"XBB.1.16.15","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.16.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-07-13"},"Nextclade_pango":{"value":"XBB.1.16.15"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.857906175512044}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000643","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.16"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.387618832150732}},"branch_attrs":{"mutations":{"nuc":["C7765T"]}},"children":[{"name":"XBB.1.16.29","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.1.16.29"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":6.25},"placement_prior":{"value":-4.907769989352377}},"branch_attrs":{"mutations":{"nuc":["C7081T","G11083T","T18703G","T22912C","C24210T"],"ORF1a":["L3606F"],"ORF1b":["Y1746D"],"S":["T883I"]},"labels":{"aa":"ORF1a: L3606F; ORF1b: Y1746D; S: T883I","spike_mutations":"T883I"}}},{"name":"XBB.1.16.30","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.1.16.30"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167407299858134}},"branch_attrs":{"mutations":{"nuc":["G23222C","T25779C","A29499G"],"N":["Q409R"],"S":["E554Q"]},"labels":{"aa":"N: Q409R; S: E554Q","spike_mutations":"E554Q"}}},{"name":"XBB.1.16.31","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"XBB.1.16.31"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.509519881072803}},"branch_attrs":{"mutations":{"nuc":["T9004C"]}}}]},{"name":"internal_4934b995","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.16.13"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16.13"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.5464394642023525}},"branch_attrs":{"mutations":{"nuc":["G1820A","G3567A"],"ORF1a":["G519S","G1101D"]},"labels":{"aa":"ORF1a: G519S, G1101D"}},"children":[{"name":"XBB.1.16.13","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"XBB.1.16.13"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5464394642023525}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000645","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.16.13.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"HF.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-3.9030188337613745}},"branch_attrs":{"mutations":{"nuc":["C17949T","A22474C","C25006T"],"S":["K304N"]},"labels":{"aa":"S: K304N","spike_mutations":"K304N"}},"children":[{"name":"HF.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"HF.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9030188337613745}},"branch_attrs":{"mutations":{}}},{"name":"HF.1.1","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.13.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"HF.1.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.277681274424172}},"branch_attrs":{"mutations":{"nuc":["C6627T","C7006T","C13994T","G17149T","C24863T","G28376A"],"N":["A35T"],"ORF1a":["T2121I"],"ORF1b":["A176V","V1228L"],"S":["H1101Y"]},"labels":{"aa":"N: A35T; ORF1a: T2121I; ORF1b: A176V, V1228L; S: H1101Y","spike_mutations":"H1101Y"}}},{"name":"HF.1.2","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.13.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"HF.1.2"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.063085760214502}},"branch_attrs":{"mutations":{"nuc":["C3737T","C23625T"],"ORF1a":["P1158S"],"S":["A688V"]},"labels":{"aa":"ORF1a: P1158S; S: A688V","spike_mutations":"A688V"}}}]}]},{"name":"internal_adf0d069","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.16.6"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16.6"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.308689064310701}},"branch_attrs":{"mutations":{"nuc":["C8947T","A12397G","T22930A"],"S":["F456L"]},"labels":{"aa":"S: F456L","spike_mutations":"F456L"}},"children":[{"name":"XBB.1.16.6","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.16.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"XBB.1.16.6"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.308689064310701}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000647","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.16.6"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16.6"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-3.1651287223278204}},"branch_attrs":{"mutations":{"nuc":["A10861G","T23986C"]}},"children":[{"name":"JF.2","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.16.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"JF.2"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.981770722896222}},"branch_attrs":{"mutations":{"nuc":["A976T","G23587T","G28166C"],"ORF1a":["E237D"],"ORF8":["Q91H"],"S":["Q675H"]},"labels":{"aa":"ORF1a: E237D; ORF8: Q91H; S: Q675H","spike_mutations":"Q675H"}}},{"name":"JF.3","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.16.6.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"JF.3"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0.173611},"placement_prior":{"value":-5.5098299806803395}},"branch_attrs":{"mutations":{"nuc":["C1514T","A12759G","G21604T","G22927T","C23991T","C28657T"],"ORF1a":["H417Y","D4165G"],"S":["Q14H","L455F","S810L"]},"labels":{"aa":"ORF1a: H417Y, D4165G; S: Q14H, L455F, S810L","spike_mutations":"Q14H, L455F, S810L"}}},{"name":"JF.4","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.16.6.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-12-20"},"Nextclade_pango":{"value":"JF.4"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.815020112044035}},"branch_attrs":{"mutations":{"nuc":["C900T","C27937T"],"ORF1a":["S212L"],"ORF8":["A15V"]},"labels":{"aa":"ORF1a: S212L; ORF8: A15V"}}},{"name":"internal_a68d6fb2","node_attrs":{"div":45,"partiallyAliased":{"value":"XBB.1.16.6.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"JF.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.276024329238682}},"branch_attrs":{"mutations":{"nuc":["G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}},"children":[{"name":"JF.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.16.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"JF.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.276024329238682}},"branch_attrs":{"mutations":{}}},{"name":"internal_398cc75a","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.16.6.1.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"JF.1.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.18736455701838}},"branch_attrs":{"mutations":{"nuc":["C3874T","C6354T"],"ORF1a":["S2030L"]},"labels":{"aa":"ORF1a: S2030L"}},"children":[{"name":"JF.1.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.16.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-12-20"},"Nextclade_pango":{"value":"JF.1.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.18736455701838}},"branch_attrs":{"mutations":{}}},{"name":"JF.1.1.1","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XBB.1.16.6.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-1.2326700000000002"},"designation_date":{"value":"2023-12-20"},"Nextclade_pango":{"value":"JF.1.1.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.083861248408058}},"branch_attrs":{"mutations":{"nuc":["C6278T","C22986T","G29645A"],"ORF1a":["P2005S"],"S":["A475V"]},"labels":{"aa":"ORF1a: P2005S; S: A475V","spike_mutations":"A475V"}}},{"name":"JF.1.1.2","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.16.6.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-12-20"},"Nextclade_pango":{"value":"JF.1.1.2"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.314853377464284}},"branch_attrs":{"mutations":{"nuc":["G25352T"],"S":["V1264L"]},"labels":{"aa":"S: V1264L","spike_mutations":"V1264L"}}}]}]}]}]},{"name":"internal_9df31b5b","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.16.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-3.431147080461406}},"branch_attrs":{"mutations":{"nuc":["C23202T"],"S":["T547I"]},"labels":{"aa":"S: T547I","spike_mutations":"T547I"}},"children":[{"name":"FU.4","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9203893783704078"},"partiallyAliased":{"value":"XBB.1.16.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"2.14642"},"designation_date":{"value":"2023-07-11"},"Nextclade_pango":{"value":"FU.4"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.1220448020321925}},"branch_attrs":{"mutations":{"nuc":["A22920T","T29410C"],"S":["Y453F"]},"labels":{"aa":"S: Y453F","spike_mutations":"Y453F"}}},{"name":"FU.5","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-27"},"Nextclade_pango":{"value":"FU.5"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.997946619701466}},"branch_attrs":{"mutations":{"nuc":["C1889T","A17295G","C17430T","A21851G"],"ORF1a":["R542C"],"S":["K97E"]},"labels":{"aa":"ORF1a: R542C; S: K97E","spike_mutations":"K97E"}}},{"name":"XBB.1.16.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-03-22"},"Nextclade_pango":{"value":"XBB.1.16.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.431147080461406}},"branch_attrs":{"mutations":{}}},{"name":"internal_96ac0a1b","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.16.1.2"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"FU.2"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.1172431557157685}},"branch_attrs":{"mutations":{"nuc":["T44C","C8692T"]}},"children":[{"name":"FU.2","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FU.2"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.1172431557157685}},"branch_attrs":{"mutations":{}}},{"name":"FU.2.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-20"},"Nextclade_pango":{"value":"FU.2.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.039517513512951}},"branch_attrs":{"mutations":{"nuc":["T241A","C6582A","A12526T","G23417C"],"ORF1a":["T2106N"],"S":["E619Q"]},"labels":{"aa":"ORF1a: T2106N; S: E619Q","spike_mutations":"E619Q"}}}]},{"name":"internal_589e1bd1","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.16.1.3"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"FU.3"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.937325497711736}},"branch_attrs":{"mutations":{"nuc":["C11665T"]}},"children":[{"name":"FU.3","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"FU.3"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.937325497711736}},"branch_attrs":{"mutations":{}}},{"name":"FU.3.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"FU.3.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.2848677539175615}},"branch_attrs":{"mutations":{"nuc":["G22112A"],"S":["G184S"]},"labels":{"aa":"S: G184S","spike_mutations":"G184S"}}}]},{"name":"NODE_0000653","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.16.1.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"FU.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-3.697346218852299}},"branch_attrs":{"mutations":{"nuc":["T3802C"]}},"children":[{"name":"FU.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FU.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.697346218852299}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000654","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.16.1.1.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"FU.1.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-5.644528554577796}},"branch_attrs":{"mutations":{"nuc":["T2G","A25359G","A26708G"],"S":["K1266R"]},"labels":{"aa":"S: K1266R","spike_mutations":"K1266R"}},"children":[{"name":"FU.1.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FU.1.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.644528554577796}},"branch_attrs":{"mutations":{}}},{"name":"FU.1.1.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FU.1.1.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004680002360434}},"branch_attrs":{"mutations":{"nuc":["C5301T","A21783G"],"ORF1a":["A1679V"],"S":["N74S"]},"labels":{"aa":"ORF1a: A1679V; S: N74S","spike_mutations":"N74S"}}}]}]}]},{"name":"internal_bc45682f","node_attrs":{"div":41,"partiallyAliased":{"value":"XBB.1.16.2"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"XBB.1.16.2"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-4.054553514361543}},"branch_attrs":{"mutations":{"nuc":["C3042A","G25429C"],"ORF1a":["P926H"],"ORF3a":["V13L"]},"labels":{"aa":"ORF1a: P926H; ORF3a: V13L"}},"children":[{"name":"GY.3","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"GY.3"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.196449546629929}},"branch_attrs":{"mutations":{"nuc":["G22093C","C26753T"],"S":["M177I"]},"labels":{"aa":"S: M177I","spike_mutations":"M177I"}}},{"name":"GY.4","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0066947319842137"},"partiallyAliased":{"value":"XBB.1.16.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8164899999999998"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"GY.4"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["C1348T","T22912G","C29095T"],"S":["N450K"]},"labels":{"aa":"S: N450K","spike_mutations":"N450K"}}},{"name":"GY.5","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"GY.5"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.162239791935268}},"branch_attrs":{"mutations":{"nuc":["G9190C"]}}},{"name":"GY.6","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"GY.6"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.468300841155233}},"branch_attrs":{"mutations":{"nuc":["G5558A"],"ORF1a":["V1765I"]},"labels":{"aa":"ORF1a: V1765I"}}},{"name":"GY.7","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"GY.7"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.662194054806103}},"branch_attrs":{"mutations":{"nuc":["G5515T","G11114T","T29867C"],"ORF1a":["G3617C"]},"labels":{"aa":"ORF1a: G3617C"}}},{"name":"GY.8","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.16.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"GY.8"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.840495216506084}},"branch_attrs":{"mutations":{"nuc":["T22928C","C25452T"],"S":["F456L"]},"labels":{"aa":"S: F456L","spike_mutations":"F456L"}}},{"name":"GY.9","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"GY.9"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.12256653603838}},"branch_attrs":{"mutations":{"nuc":["T22119C","T22292C"],"S":["F186S"]},"labels":{"aa":"S: F186S","spike_mutations":"F186S"}}},{"name":"XBB.1.16.2","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"XBB.1.16.2"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.054553514361543}},"branch_attrs":{"mutations":{}}},{"name":"internal_85eaf595","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.16.2.2"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"GY.2"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-6.119310987456928}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}},"children":[{"name":"GY.2","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-26"},"Nextclade_pango":{"value":"GY.2"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.119310987456928}},"branch_attrs":{"mutations":{}}},{"name":"GY.2.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"GY.2.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.130385871479411}},"branch_attrs":{"mutations":{"nuc":["C22326T"],"S":["S255F"]},"labels":{"aa":"S: S255F","spike_mutations":"S255F"}}}]},{"name":"internal_4bba6217","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.16.2.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"GY.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-5.034009844577067}},"branch_attrs":{"mutations":{"nuc":["G12467T","C21812A"],"ORF1a":["A4068S"],"S":["L84I"]},"labels":{"aa":"ORF1a: A4068S; S: L84I","spike_mutations":"L84I"}},"children":[{"name":"GY.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.16.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-26"},"Nextclade_pango":{"value":"GY.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.034009844577067}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000658","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.16.2.1.1"},"clade_membership":{"value":"23B"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23B (XBB.1.16)"},"Nextclade_pango":{"value":"GY.1.1"},"clade_nextstrain":{"value":"23B"},"placement_prior":{"value":-6.032708725960677}},"branch_attrs":{"mutations":{"nuc":["C19380T","G22927T","T22928C"],"S":["L455F","F456L"]},"labels":{"aa":"S: L455F, F456L","spike_mutations":"L455F, F456L"}},"children":[{"name":"GY.1.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.16.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-11-30"},"Nextclade_pango":{"value":"GY.1.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.032708725960677}},"branch_attrs":{"mutations":{}}},{"name":"GY.1.1.1","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1155295768253692"},"partiallyAliased":{"value":"XBB.1.16.2.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23B"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23B (XBB.1.16)"},"ace2_binding":{"value":"-1.2326700000000002"},"designation_date":{"value":"2023-11-30"},"Nextclade_pango":{"value":"GY.1.1.1"},"clade_nextstrain":{"value":"23B"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907769989352378}},"branch_attrs":{"mutations":{"nuc":["T44C","C1091T","C3117T","G3452A","C11020T","T15276C","C22986T"],"ORF1a":["P276S","T951I","V1063I"],"S":["A475V"]},"labels":{"aa":"ORF1a: P276S, T951I, V1063I; S: A475V","spike_mutations":"A475V"}}}]}]}]}]},{"name":"internal_bbead6fe","node_attrs":{"div":30,"partiallyAliased":{"value":"XBB.1"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.859160963207107}},"branch_attrs":{"mutations":{"nuc":["C12789T"],"ORF1a":["T4175I"]},"labels":{"aa":"ORF1a: T4175I"}},"children":[{"name":"XBB.1.23","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.23"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.178313082378889}},"branch_attrs":{"mutations":{"nuc":["C26447T","C29203T","-29759G"],"E":["S68F"]},"labels":{"aa":"E: S68F"}}},{"name":"NODE_0000660","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.42"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.42"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.639746749276329}},"branch_attrs":{"mutations":{"nuc":["A16878T","T23018C","G23401T"],"S":["S486P","Q613H"]},"labels":{"aa":"S: S486P, Q613H","spike_mutations":"S486P, Q613H"}},"children":[{"name":"XBB.1.42","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.42"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-31"},"Nextclade_pango":{"value":"XBB.1.42"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.639746749276329}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.1.42.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.42.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-17"},"Nextclade_pango":{"value":"XBB.1.42.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.296344724002482}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"NODE_0000661","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.42.2"},"clade_membership":{"value":"22F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"22F (XBB)"},"Nextclade_pango":{"value":"XBB.1.42.2"},"clade_nextstrain":{"value":"22F"},"placement_prior":{"value":-4.156323631088246}},"branch_attrs":{"mutations":{"nuc":["C6040T","G9049A"]}},"children":[{"name":"HL.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.42.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HL.1"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.481696002959377}},"branch_attrs":{"mutations":{"nuc":["C2143T","G23311C"],"S":["E583D"]},"labels":{"aa":"S: E583D","spike_mutations":"E583D"}}},{"name":"HL.2","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.42.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HL.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.940816156584127}},"branch_attrs":{"mutations":{"nuc":["C6114A","G24348A"],"ORF1a":["P1950H"],"S":["S929N"]},"labels":{"aa":"ORF1a: P1950H; S: S929N","spike_mutations":"S929N"}}},{"name":"XBB.1.42.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.42.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"22F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"22F (XBB)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"XBB.1.42.2"},"clade_nextstrain":{"value":"22F"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.156323631088246}},"branch_attrs":{"mutations":{}}}]}]},{"name":"internal_XBB.1.9.2","node_attrs":{"div":31,"partiallyAliased":{"value":"XBB.1.9"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"XBB.1.9"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.311326079456422}},"branch_attrs":{"mutations":{"nuc":["G5720A"],"ORF1a":["G1819S"]},"labels":{"aa":"ORF1a: G1819S","clade":"23D"}},"children":[{"name":"XBB.1.9","node_attrs":{"div":31,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XBB.1.9"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.311326079456422}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"XBB.1.9.4","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.9.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.879364120531054}},"branch_attrs":{"mutations":{"nuc":["C28603T","-29759G"]}}},{"name":"XBB.1.9.5","node_attrs":{"div":32,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-03-19"},"Nextclade_pango":{"value":"XBB.1.9.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.673043878952419}},"branch_attrs":{"mutations":{"nuc":["T2152G"],"ORF1a":["D629E"]},"labels":{"aa":"ORF1a: D629E"}}},{"name":"XBB.1.9.6","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9206657740988851"},"partiallyAliased":{"value":"XBB.1.9.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.13558"},"designation_date":{"value":"2023-04-26"},"Nextclade_pango":{"value":"XBB.1.9.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["T446C","T1147C","C3165T","A15196G","G22770A","G23270A","C26936T","G27201T","C27881A"],"ORF1a":["A967V"],"ORF1b":["T577A"],"ORF7b":["H42Q"],"S":["R403K","A570T"]},"labels":{"aa":"ORF1a: A967V; ORF1b: T577A; ORF7b: H42Q; S: R403K, A570T","spike_mutations":"R403K, A570T"}}},{"name":"XBB.1.9.7","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"XBB.1.9.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978318039991315}},"branch_attrs":{"mutations":{"nuc":["T44C","C3317A","C6500T","G13459A","A22995G","T23018C"],"ORF1a":["P1018T","P2079S"],"S":["K478R","S486P"]},"labels":{"aa":"ORF1a: P1018T, P2079S; S: K478R, S486P","spike_mutations":"K478R, S486P"}}},{"name":"NODE_0000663","node_attrs":{"div":33,"partiallyAliased":{"value":"XBB.1.9.3"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"XBB.1.9.3"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.166647354603081}},"branch_attrs":{"mutations":{"nuc":["G18169T","G19480A"],"ORF1b":["G1568C","G2005S"]},"labels":{"aa":"ORF1b: G1568C, G2005S"}},"children":[{"name":"GD.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9183287542025276"},"partiallyAliased":{"value":"XBB.1.9.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.6875"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"GD.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.498942892971975}},"branch_attrs":{"mutations":{"nuc":["T44C","C6286T","A22920T"],"S":["Y453F"]},"labels":{"aa":"S: Y453F","spike_mutations":"Y453F"}}},{"name":"GD.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"GD.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.085485804398883}},"branch_attrs":{"mutations":{"nuc":["T44C","T22197C"],"S":["L212S"]},"labels":{"aa":"S: L212S","spike_mutations":"L212S"}}},{"name":"GD.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"GD.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.292346036466434}},"branch_attrs":{"mutations":{"nuc":["A12644G","T21737C","C26570T"],"ORF1a":["I4127V"],"S":["F59L"]},"labels":{"aa":"ORF1a: I4127V; S: F59L","spike_mutations":"F59L"}}},{"name":"XBB.1.9.3","node_attrs":{"div":33,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.40686999999999995"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"XBB.1.9.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.166647354603081}},"branch_attrs":{"mutations":{}}}]},{"name":"NODE_0000664","node_attrs":{"div":34,"partiallyAliased":{"value":"XBB.1.9.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"XBB.1.9.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.3813752204950362}},"branch_attrs":{"mutations":{"nuc":["T44C","C11956T","T23018C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"FL.11","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.11"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4983895822189535}},"branch_attrs":{"mutations":{"nuc":["G1312T","C9073T","A11782G","C28462T"],"ORF1a":["L349F"],"ORF9b":["T60I"]},"labels":{"aa":"ORF1a: L349F; ORF9b: T60I"}}},{"name":"FL.12","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-08"},"Nextclade_pango":{"value":"FL.12"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.0991384591345605}},"branch_attrs":{"mutations":{"nuc":["G6894T"],"ORF1a":["C2210F"]},"labels":{"aa":"ORF1a: C2210F"}}},{"name":"FL.14","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"FL.14"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.284003989218447}},"branch_attrs":{"mutations":{"nuc":["T2C","C22978T","G24926A","C29311T"],"S":["V1122M"]},"labels":{"aa":"S: V1122M","spike_mutations":"V1122M"}}},{"name":"FL.16","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"FL.16"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.435838873072913}},"branch_attrs":{"mutations":{"nuc":["C3511T","A22206T"],"S":["D215V"]},"labels":{"aa":"S: D215V","spike_mutations":"D215V"}}},{"name":"FL.18","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"FL.18"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.051662137454238}},"branch_attrs":{"mutations":{"nuc":["C6285T"],"ORF1a":["T2007I"]},"labels":{"aa":"ORF1a: T2007I"}}},{"name":"FL.22","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.22"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.51539670177989}},"branch_attrs":{"mutations":{"nuc":["A17713G","T24184C"],"ORF1b":["I1416V"]},"labels":{"aa":"ORF1b: I1416V"}}},{"name":"FL.25","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"FL.25"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.328781287036651}},"branch_attrs":{"mutations":{"nuc":["G23222A"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"FL.27","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"FL.27"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.304052735615232}},"branch_attrs":{"mutations":{"nuc":["G11504A"],"ORF1a":["V3747I"]},"labels":{"aa":"ORF1a: V3747I"}}},{"name":"FL.28","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FL.28"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430619107148178}},"branch_attrs":{"mutations":{"nuc":["C4824T","C7573T","G12769A","C13554T","C16887T","A22995G","G25595T","C29870A"],"ORF1a":["S1520F"],"ORF3a":["R68I"],"S":["K478R"]},"labels":{"aa":"ORF1a: S1520F; ORF3a: R68I; S: K478R","spike_mutations":"K478R"}}},{"name":"FL.29","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.7904599999999999"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"FL.29"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.704117417315679}},"branch_attrs":{"mutations":{"nuc":["A20458G","T23030C"],"ORF1b":["I2331V"],"S":["S490P"]},"labels":{"aa":"ORF1b: I2331V; S: S490P","spike_mutations":"S490P"}}},{"name":"FL.34","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.34"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.859451078277165}},"branch_attrs":{"mutations":{"nuc":["G24914T","C25614T","G26959A"],"M":["R146H"],"S":["D1118Y"]},"labels":{"aa":"M: R146H; S: D1118Y","spike_mutations":"D1118Y"}}},{"name":"FL.36","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.9.1.36"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"FL.36"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16735626437147}},"branch_attrs":{"mutations":{"nuc":["G12038A","G22132T","A22629C","C23277T","G24257T","G24770A"],"ORF1a":["V3925I"],"S":["R190S","K356T","T572I","A899S","A1070T"]},"labels":{"aa":"ORF1a: V3925I; S: R190S, K356T, T572I, A899S, A1070T","spike_mutations":"R190S, K356T, T572I, A899S, A1070T"}}},{"name":"FL.37","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.37"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"FL.37"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.858740045635448}},"branch_attrs":{"mutations":{"nuc":["C547T","C29614T"]}}},{"name":"FL.40","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.40"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FL.40"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.963164043709473}},"branch_attrs":{"mutations":{"nuc":["A11537G","C27684T"],"ORF1a":["I3758V"]},"labels":{"aa":"ORF1a: I3758V"}}},{"name":"FL.6","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-03"},"Nextclade_pango":{"value":"FL.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.761686640360499}},"branch_attrs":{"mutations":{"nuc":["A2810G"],"ORF1a":["I849V"]},"labels":{"aa":"ORF1a: I849V"}}},{"name":"FL.7","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-06"},"Nextclade_pango":{"value":"FL.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5177819674401265}},"branch_attrs":{"mutations":{"nuc":["C222T","C21714T"],"S":["T51I"]},"labels":{"aa":"S: T51I","spike_mutations":"T51I"}}},{"name":"FL.8","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.8"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.181343255512087}},"branch_attrs":{"mutations":{"nuc":["A25576T"],"ORF3a":["I62F"]},"labels":{"aa":"ORF3a: I62F"}}},{"name":"FL.9","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.9"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.479370955400975}},"branch_attrs":{"mutations":{"nuc":["C23707T","T29691C"]}}},{"name":"XBB.1.9.1","node_attrs":{"div":34,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-01-09"},"Nextclade_pango":{"value":"XBB.1.9.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3813752204950362}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000665","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.1.18.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.18.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.062659251597256}},"branch_attrs":{"mutations":{"nuc":["C6285T","G12907A","A27507C","C28770T"],"N":["T166I"],"ORF1a":["T2007I"]},"labels":{"aa":"N: T166I; ORF1a: T2007I"}},"children":[{"name":"FL.18.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.18.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"FL.18.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062659251597256}},"branch_attrs":{"mutations":{}}},{"name":"FL.18.1.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.18.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"FL.18.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.50979442794143}},"branch_attrs":{"mutations":{"nuc":["G1820A","C15390A","A22161G","A22995G","T26457C"],"ORF1a":["G519S"],"ORF1b":["H641Q"],"S":["Y200C","K478R"]},"labels":{"aa":"ORF1a: G519S; ORF1b: H641Q; S: Y200C, K478R","spike_mutations":"Y200C, K478R"}}}]},{"name":"NODE_0000666","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.1.19"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.19"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.731672804638093}},"branch_attrs":{"mutations":{"nuc":["C44T","T2377C","C17502T","T24505G"]}},"children":[{"name":"FL.19","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"FL.19"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.731672804638093}},"branch_attrs":{"mutations":{}}},{"name":"FL.19.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.19.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-27"},"Nextclade_pango":{"value":"FL.19.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167391139161464}},"branch_attrs":{"mutations":{"nuc":["C367T","T12145C","C12952T","C19097T","T22928C","G24757T"],"ORF1b":["A1877V"],"S":["F456L"]},"labels":{"aa":"ORF1b: A1877V; S: F456L","spike_mutations":"F456L"}}}]},{"name":"internal_b97dbddb","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.9.1.24"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.24"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.658555817507229}},"branch_attrs":{"mutations":{"nuc":["A15082G","C22570T","G23401T","C23625T","A25637G"],"ORF1b":["I539V"],"ORF3a":["N82S"],"S":["Q613H","A688V"]},"labels":{"aa":"ORF1b: I539V; ORF3a: N82S; S: Q613H, A688V","spike_mutations":"Q613H, A688V"}},"children":[{"name":"FL.24","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-09"},"Nextclade_pango":{"value":"FL.24"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.658555817507229}},"branch_attrs":{"mutations":{}}},{"name":"FL.24.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.24.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FL.24.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.345469434233312}},"branch_attrs":{"mutations":{"nuc":["T9139C","A22995G","C24919T"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_ea1eda9d","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.26"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.26"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.4247922750542905}},"branch_attrs":{"mutations":{"nuc":["C22264T"]}},"children":[{"name":"FL.26","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"FL.26"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4247922750542905}},"branch_attrs":{"mutations":{}}},{"name":"FL.26.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.26.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0848"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"FL.26.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["A3852T","A21661C","A23040T","C25658T"],"ORF1a":["E1196V"],"ORF3a":["T89I"],"S":["Q493L"]},"labels":{"aa":"ORF1a: E1196V; ORF3a: T89I; S: Q493L","spike_mutations":"Q493L"}}}]},{"name":"NODE_0000669","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.9.1.30"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.30"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-6.834355058536172}},"branch_attrs":{"mutations":{"nuc":["G500A","C7303T","C22858T","G23012A","C23013A"],"ORF1a":["A79T"],"S":["A484K"]},"labels":{"aa":"ORF1a: A79T; S: A484K","spike_mutations":"A484K"}},"children":[{"name":"FL.30","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9832694599507916"},"partiallyAliased":{"value":"XBB.1.9.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.90046"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"FL.30"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.20823892424685}},"branch_attrs":{"mutations":{"nuc":["C17747A","T19530C","C20405T"],"ORF1b":["P1427H","P2313L"]},"labels":{"aa":"ORF1b: P1427H, P2313L"}}},{"name":"FL.30.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9832694599507916"},"partiallyAliased":{"value":"XBB.1.9.1.30.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.90046"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.30.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606695553219501}},"branch_attrs":{"mutations":{"nuc":["G24116T"],"S":["A852S"]},"labels":{"aa":"S: A852S","spike_mutations":"A852S"}}}]},{"name":"NODE_0000670","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.1.31"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.31"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.09768749129594}},"branch_attrs":{"mutations":{"nuc":["G12769T","G15438T"],"ORF1b":["M657I"]},"labels":{"aa":"ORF1b: M657I"}},"children":[{"name":"FL.31","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.31"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.09768749129594}},"branch_attrs":{"mutations":{}}},{"name":"FL.31.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.31.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.31.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129603924973818}},"branch_attrs":{"mutations":{"nuc":["C882T","G2265A","A3417G","C16575T","G21800C","A22995G","G23401T","G25471C","C28236T"],"ORF1a":["A206V","C667Y","K1051R"],"ORF3a":["D27H"],"ORF8":["R115C"],"S":["D80H","K478R","Q613H"]},"labels":{"aa":"ORF1a: A206V, C667Y, K1051R; ORF3a: D27H; ORF8: R115C; S: D80H, K478R, Q613H","spike_mutations":"D80H, K478R, Q613H"}}}]},{"name":"NODE_0000671","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.9.1.32"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.32"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.810859976344321}},"branch_attrs":{"mutations":{"nuc":["G7331A","G21578C","C21952T","G23222C","C28657T"],"ORF1a":["V2356I"],"S":["V6L","E554Q"]},"labels":{"aa":"ORF1a: V2356I; S: V6L, E554Q","spike_mutations":"V6L, E554Q"}},"children":[{"name":"FL.32","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.32"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.810859976344321}},"branch_attrs":{"mutations":{}}},{"name":"FL.32.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.32.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.32.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.363701945002102}},"branch_attrs":{"mutations":{"nuc":["T13339C","C19961T","T22928C","C25572T"],"ORF1b":["T2165M"],"S":["F456L"]},"labels":{"aa":"ORF1b: T2165M; S: F456L","spike_mutations":"F456L"}}}]},{"name":"internal_05e5e308","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.33"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.33"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.9542816091554975}},"branch_attrs":{"mutations":{"nuc":["C17597T"],"ORF1b":["A1377V"]},"labels":{"aa":"ORF1b: A1377V"}},"children":[{"name":"FL.33","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.33"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9542816091554975}},"branch_attrs":{"mutations":{}}},{"name":"FL.33.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.33.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.33.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.705949543919687}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_14b9e262","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.35"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.35"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.017922511684863}},"branch_attrs":{"mutations":{"nuc":["C28201T"],"ORF8":["S103L"]},"labels":{"aa":"ORF8: S103L"}},"children":[{"name":"FL.35","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.35"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.35"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.017922511684863}},"branch_attrs":{"mutations":{}}},{"name":"FL.35.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.35.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.35.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.981514156711412}},"branch_attrs":{"mutations":{"nuc":["C44T","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_879bd6b4","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.39"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.39"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.940400106393716}},"branch_attrs":{"mutations":{"nuc":["G2162A"],"ORF1a":["E633K"]},"labels":{"aa":"ORF1a: E633K"}},"children":[{"name":"FL.39","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.39"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FL.39"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.940400106393716}},"branch_attrs":{"mutations":{}}},{"name":"FL.39.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.9.1.39.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.81109"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FL.39.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":11.111111},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["C44T","A1378G","T12847C","C13366T","T15096C","C15857T","C17746T","A22995G","C23123T","T27408G"],"ORF1b":["T797I","P1427S"],"S":["K478R","P521S"]},"labels":{"aa":"ORF1b: T797I, P1427S; S: K478R, P521S","spike_mutations":"K478R, P521S"}}}]},{"name":"NODE_0000675","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.5"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.5"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.9935230061467055}},"branch_attrs":{"mutations":{"nuc":["C29358T"],"N":["T362I"]},"labels":{"aa":"N: T362I"}},"children":[{"name":"FL.5","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FL.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9935230061467055}},"branch_attrs":{"mutations":{}}},{"name":"FL.5.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.5.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.000765097225443}},"branch_attrs":{"mutations":{"nuc":["C2710T","C7039T","T22092C","C27828A"],"ORF7b":["L25I"],"S":["M177T"]},"labels":{"aa":"ORF7b: L25I; S: M177T","spike_mutations":"M177T"}}}]},{"name":"NODE_0000676","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.1.17"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.17"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.0092276301111545}},"branch_attrs":{"mutations":{"nuc":["T3898C","C28333T"],"ORF9b":["P17L"]},"labels":{"aa":"ORF9b: P17L"}},"children":[{"name":"FL.17","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-14"},"Nextclade_pango":{"value":"FL.17"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.0092276301111545}},"branch_attrs":{"mutations":{}}},{"name":"FL.17.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.17.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-14"},"Nextclade_pango":{"value":"FL.17.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167407299858134}},"branch_attrs":{"mutations":{"nuc":["G1C","C2306T","A2389G","G9087A","A21782C"],"ORF1a":["L681F","G2941D"],"S":["N74H"]},"labels":{"aa":"ORF1a: L681F, G2941D; S: N74H","spike_mutations":"N74H"}}},{"name":"FL.17.2","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.020665630365217"},"partiallyAliased":{"value":"XBB.1.9.1.17.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.97144"},"designation_date":{"value":"2023-06-14"},"Nextclade_pango":{"value":"FL.17.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.407167638783192}},"branch_attrs":{"mutations":{"nuc":["C44T","T22917G","G27703C"],"ORF7a":["V104L"],"S":["L452R"]},"labels":{"aa":"ORF7a: V104L; S: L452R","spike_mutations":"L452R"}}}]},{"name":"NODE_0000677","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.9.1.20"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.20"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.476395828589314}},"branch_attrs":{"mutations":{"nuc":["C44T","C1912T","A6293G","C9391T","C14016T","G21718C","T22928C","C25714T"],"ORF1a":["I2010V"],"ORF3a":["L108F"],"S":["Q52H","F456L"]},"labels":{"aa":"ORF1a: I2010V; ORF3a: L108F; S: Q52H, F456L","spike_mutations":"Q52H, F456L"}},"children":[{"name":"FL.20","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-29"},"Nextclade_pango":{"value":"FL.20"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.476395828589314}},"branch_attrs":{"mutations":{}}},{"name":"FL.20.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.1.20.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.5920999999999998"},"designation_date":{"value":"2023-07-26"},"Nextclade_pango":{"value":"FL.20.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.62144873118267}},"branch_attrs":{"mutations":{"nuc":["T22926G"],"S":["L455W"]},"labels":{"aa":"S: L455W","spike_mutations":"L455W"}}},{"name":"FL.20.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.20.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.20.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.501218800757151}},"branch_attrs":{"mutations":{"nuc":["T13C","T19755C","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_10251222","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.21"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.21"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.004687019029073}},"branch_attrs":{"mutations":{"nuc":["A10564T"]}},"children":[{"name":"FL.21","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.21"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.004687019029073}},"branch_attrs":{"mutations":{}}},{"name":"FL.21.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.21.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-27"},"Nextclade_pango":{"value":"FL.21.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.930016836471855}},"branch_attrs":{"mutations":{"nuc":["C44T","G24812A"],"S":["D1084N"]},"labels":{"aa":"S: D1084N","spike_mutations":"D1084N"}}},{"name":"FL.21.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.21.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-27"},"Nextclade_pango":{"value":"FL.21.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847047739974282}},"branch_attrs":{"mutations":{"nuc":["G3320T","A8884G","C22987A"],"ORF1a":["V1019F","I2873M"]},"labels":{"aa":"ORF1a: V1019F, I2873M"}}}]},{"name":"internal_8196e6d8","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.10"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.10"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.309366919079789}},"branch_attrs":{"mutations":{"nuc":["G2235A"],"ORF1a":["C657Y"]},"labels":{"aa":"ORF1a: C657Y"}},"children":[{"name":"FL.10","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.10"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.309366919079789}},"branch_attrs":{"mutations":{}}},{"name":"FL.10.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-10"},"Nextclade_pango":{"value":"FL.10.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9048815125973175}},"branch_attrs":{"mutations":{"nuc":["C4234T","G23222A","T24352C"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"FL.10.2","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1739566072580079"},"partiallyAliased":{"value":"XBB.1.9.1.10.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.98073"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"FL.10.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["C44T","T11422C","G12797A","C17502T","A17612G","C18888T","A22629C","C23130A","G25471A","A27868T","G29392C","C29518A","T29728-","T29729-","C29730-","A29731-","C29732-","C29733-","T29760-","A29761-","C29762-","A29763-","G29764-","T29765-","G29766-","A29767-","A29768-","C29769-","A29770-","A29771-","T29772-","G29773-","C29774-","T29775-","A29776-"],"N":["K373N","D415E"],"ORF1a":["G4178S"],"ORF1b":["N1382S"],"ORF3a":["D27N"],"ORF7b":["N38I"],"S":["K356T","T523N"]},"labels":{"aa":"N: K373N, D415E; ORF1a: G4178S; ORF1b: N1382S; ORF3a: D27N; ORF7b: N38I; S: K356T, T523N","spike_mutations":"K356T, T523N"}}},{"name":"FL.10.3","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.10.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-21"},"Nextclade_pango":{"value":"FL.10.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.828118799944502}},"branch_attrs":{"mutations":{"nuc":["G22103A","T23776C"],"S":["G181R"]},"labels":{"aa":"S: G181R","spike_mutations":"G181R"}}}]},{"name":"NODE_0000680","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.23"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.23"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.555614400938516}},"branch_attrs":{"mutations":{"nuc":["G16861A"],"ORF1b":["V1132I"]},"labels":{"aa":"ORF1b: V1132I"}},"children":[{"name":"FL.23","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.23"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.555614400938516}},"branch_attrs":{"mutations":{}}},{"name":"FL.23.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.23.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"FL.23.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810837519991311}},"branch_attrs":{"mutations":{"nuc":["C8016T","C8311T","C23185T"],"ORF1a":["A2584V"]},"labels":{"aa":"ORF1a: A2584V"}}},{"name":"NODE_0000681","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.1.23.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.23.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-9.097293832704947}},"branch_attrs":{"mutations":{"nuc":["C20233T","C21998A","T23042C"],"ORF1b":["P2256S"],"S":["Q146K","S494P"]},"labels":{"aa":"ORF1b: P2256S; S: Q146K, S494P","spike_mutations":"Q146K, S494P"}},"children":[{"name":"FL.23.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9277075627549338"},"partiallyAliased":{"value":"XBB.1.9.1.23.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.96117"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.23.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-9.097293832704947}},"branch_attrs":{"mutations":{}}},{"name":"FL.23.2.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9307698749546415"},"partiallyAliased":{"value":"XBB.1.9.1.23.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8835"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.23.2.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["C1528T","C23123A"],"S":["P521T"]},"labels":{"aa":"S: P521T","spike_mutations":"P521T"}}}]}]},{"name":"NODE_0000682","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.3"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.3"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.119211028394529}},"branch_attrs":{"mutations":{"nuc":["T1753C"]}},"children":[{"name":"FL.3","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FL.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.119211028394529}},"branch_attrs":{"mutations":{}}},{"name":"FL.3.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.3.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.117773655405817}},"branch_attrs":{"mutations":{"nuc":["C7056T"],"ORF1a":["T2264I"]},"labels":{"aa":"ORF1a: T2264I"}}},{"name":"FL.3.2","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.3.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.121250586216572}},"branch_attrs":{"mutations":{"nuc":["T8830C"]}}},{"name":"FL.3.3","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.3.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.452915279923275}},"branch_attrs":{"mutations":{"nuc":["G2579A","G9257A","C13119T"],"ORF1a":["E772K","V2998I","A4285V"]},"labels":{"aa":"ORF1a: E772K, V2998I, A4285V"}}},{"name":"FL.3.4","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.3.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.969885507500901}},"branch_attrs":{"mutations":{"nuc":["G10642C","T26232C"]}}}]},{"name":"internal_ebd6af12","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.13"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.13"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.340139131106815}},"branch_attrs":{"mutations":{"nuc":["G4354A"]}},"children":[{"name":"FL.13","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"FL.13"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.340139131106815}},"branch_attrs":{"mutations":{}}},{"name":"FL.13.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9088223439642339"},"partiallyAliased":{"value":"XBB.1.9.1.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.47537999999999986"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"FL.13.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.012864574630834}},"branch_attrs":{"mutations":{"nuc":["C503T","A2611G","C13011T","G22793T"],"ORF1a":["P80S","T4249I"],"S":["A411S"]},"labels":{"aa":"ORF1a: P80S, T4249I; S: A411S","spike_mutations":"A411S"}}},{"name":"FL.13.5","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.13.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.13.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.287935195219702}},"branch_attrs":{"mutations":{"nuc":["C3264T","A3754G","T4507C","C7844A","T21976C","T22928C","C23929T","C27297T"],"ORF1a":["T1000I","L2527M"],"S":["F456L"]},"labels":{"aa":"ORF1a: T1000I, L2527M; S: F456L","spike_mutations":"F456L"}}},{"name":"internal_69bba568","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.1.13.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.13.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.977208814607526}},"branch_attrs":{"mutations":{"nuc":["T6334C","C21904T","A22629C"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}},"children":[{"name":"FL.13.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.9.1.13.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"FL.13.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.977208814607526}},"branch_attrs":{"mutations":{}}},{"name":"FL.13.2.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":35},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.9.1.13.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.13.2.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208761621473919}},"branch_attrs":{"mutations":{"nuc":["A3278-","T3279-","T3280-","G3281-","T3282-","T3283-","G3284-","A3285-","G3286-","G3287-","T3288-","T3289-","C3290-","A3291-","A3292-","C3293-","C3294-","T3295-","C3296-","A3297-","A3298-","T3299-","T3300-","A3301-","G3302-","A3303-","G3304-","A3305-","T3306-","G3307-","G3308-","A3309-","A3310-","C3311-","T3312-","T3313-","A3314-","C3315-","A3316-","C3317-","C3318-","A3319-","G3320-","T3321-","T3322-","G3323-","T3324-","T3325-","C3326-","A3327-","G3328-","A3329-","C3330-","T3331-","A3332-","T3333-","T3334-","G3335-","A3336-","A3337-","G3338-","T3339-","G3340-","A3341-","A3342-","T3343-","C7843T","C9870T","G16795T","G22094C"],"ORF1a":["I1005-","V1006-","E1007-","V1008-","Q1009-","P1010-","Q1011-","L1012-","E1013-","M1014-","E1015-","L1016-","T1017-","P1018-","V1019-","V1020-","Q1021-","T1022-","I1023-","E1024-","V1025-","N1026-","T3202M"],"ORF1b":["V1110L"],"S":["D178H"]},"labels":{"aa":"ORF1a: I1005-, V1006-, E1007-, V1008-, Q1009-, P1010-, Q1011-, L1012-, E1013-, M1014-, E1015-, L1016-, T1017-, P1018-, V1019-, V1020-, Q1021-, T1022-, I1023-, E1024-, V1025-, N1026-, T3202M; ORF1b: V1110L; S: D178H","spike_mutations":"D178H"}}}]},{"name":"internal_566a3ed0","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.1.13.3"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.13.3"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.83772378854398}},"branch_attrs":{"mutations":{"nuc":["T19110C"]}},"children":[{"name":"FL.13.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.13.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FL.13.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.83772378854398}},"branch_attrs":{"mutations":{}}},{"name":"FL.13.3.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.13.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FL.13.3.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.921444406021248}},"branch_attrs":{"mutations":{"nuc":["A2969G","G22022C"],"ORF1a":["M902V"],"S":["E154Q"]},"labels":{"aa":"ORF1a: M902V; S: E154Q","spike_mutations":"E154Q"}}}]},{"name":"internal_10382b90","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.9.1.13.4"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.13.4"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.9654412414269675}},"branch_attrs":{"mutations":{"nuc":["C44T","C5241T","C12499T","A22106G","T22928C"],"ORF1a":["P1659L"],"S":["K182E","F456L"]},"labels":{"aa":"ORF1a: P1659L; S: K182E, F456L","spike_mutations":"K182E, F456L"}},"children":[{"name":"FL.13.4","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.13.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.13.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.9654412414269675}},"branch_attrs":{"mutations":{}}},{"name":"FL.13.4.1","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0854609864513072"},"partiallyAliased":{"value":"XBB.1.9.1.13.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.07635999999999983"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"FL.13.4.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.74638262812336}},"branch_attrs":{"mutations":{"nuc":["T3160C","G3994T","G8027C","T11522G","A15489G","A15847T","G21604C","G23012A","C23013A","C28253T"],"ORF1a":["V2588L","F3753V"],"ORF1b":["T794S"],"S":["Q14H","A484K"]},"labels":{"aa":"ORF1a: V2588L, F3753V; ORF1b: T794S; S: Q14H, A484K","spike_mutations":"Q14H, A484K"}}}]}]},{"name":"internal_59305500","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"XBB.1.9.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.824989905554896}},"branch_attrs":{"mutations":{"nuc":["G2174A","C28846T"],"ORF1a":["E637K"]},"labels":{"aa":"ORF1a: E637K"}},"children":[{"name":"FL.38","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.38"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FL.38"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208743846310869}},"branch_attrs":{"mutations":{"nuc":["A2821G","C14670T","A22995G","T23158C","G23401T","C25482T"],"S":["K478R","Q613H"]},"labels":{"aa":"S: K478R, Q613H","spike_mutations":"K478R, Q613H"}}},{"name":"NODE_0000688","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.1.15"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.15"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.62746241635165}},"branch_attrs":{"mutations":{"nuc":["T22928C"],"S":["F456L"]},"labels":{"aa":"S: F456L","spike_mutations":"F456L"}},"children":[{"name":"FL.15","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-29"},"Nextclade_pango":{"value":"FL.15"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.62746241635165}},"branch_attrs":{"mutations":{}}},{"name":"internal_24b5ee08","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.9.1.15"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.15"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.14935790105831}},"branch_attrs":{"mutations":{"nuc":["G1464T","C12890T"],"ORF1a":["G400V"]},"labels":{"aa":"ORF1a: G400V"}},"children":[{"name":"FL.15.3","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.15.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-27"},"Nextclade_pango":{"value":"FL.15.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.208743846310869}},"branch_attrs":{"mutations":{"nuc":["G22104T"],"S":["G181V"]},"labels":{"aa":"S: G181V","spike_mutations":"G181V"}}},{"name":"NODE_0000690","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.9.1.15"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.15"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["G21604T"],"S":["Q14H"]},"labels":{"aa":"S: Q14H","spike_mutations":"Q14H"}},"children":[{"name":"FL.15.2","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.15.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-27"},"Nextclade_pango":{"value":"FL.15.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36362174907267}},"branch_attrs":{"mutations":{"nuc":["C1684T","C11747T","C29236T"]}}},{"name":"FL.15.4","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.15.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"FL.15.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032671299350727}},"branch_attrs":{"mutations":{"nuc":["G6819A"],"ORF1a":["S2185N"]},"labels":{"aa":"ORF1a: S2185N"}}}]},{"name":"NODE_0000691","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.9.1.15.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.15.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-6.508708583035122}},"branch_attrs":{"mutations":{"nuc":["C44T","C6285T","G6819A","G22927T"],"ORF1a":["T2007I","S2185N"],"S":["L455F"]},"labels":{"aa":"ORF1a: T2007I, S2185N; S: L455F","spike_mutations":"L455F"}},"children":[{"name":"FL.15.1","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.1.15.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-27"},"Nextclade_pango":{"value":"FL.15.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.508708583035122}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000692","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.1.9.1.15.1.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.15.1.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.399231566230485}},"branch_attrs":{"mutations":{"nuc":["C1812G","G1990T","C4438T","G19480A","C22986T"],"ORF1a":["A516G","Q575H"],"ORF1b":["G2005S"],"S":["A475V"]},"labels":{"aa":"ORF1a: A516G, Q575H; ORF1b: G2005S; S: A475V","spike_mutations":"A475V"}},"children":[{"name":"FL.15.1.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.9.1.15.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-09-27"},"Nextclade_pango":{"value":"FL.15.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.399231566230485}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000693","node_attrs":{"div":49,"partiallyAliased":{"value":"XBB.1.9.1.15.1.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.15.1.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.509717710525144}},"branch_attrs":{"mutations":{"nuc":["T9292C"]}},"children":[{"name":"KF.1","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.9.1.15.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"KF.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430619107148178}},"branch_attrs":{"mutations":{"nuc":["G805A","C10782T","C22314A"],"ORF1a":["T3506I"],"S":["P251H"]},"labels":{"aa":"ORF1a: T3506I; S: P251H","spike_mutations":"P251H"}}},{"name":"KF.2","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.9.1.15.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"KF.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.430555174154672}},"branch_attrs":{"mutations":{"nuc":["C10186T","G22111T"],"S":["E183D"]},"labels":{"aa":"S: E183D","spike_mutations":"E183D"}}}]}]}]}]}]}]},{"name":"internal_7f0cfce5","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.85538313976787}},"branch_attrs":{"mutations":{"nuc":["T4579A"]}},"children":[{"name":"FL.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"FL.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.85538313976787}},"branch_attrs":{"mutations":{}}},{"name":"FL.2.1","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FL.2.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.337200722212598}},"branch_attrs":{"mutations":{"nuc":["C10228T"]}}},{"name":"FL.2.4","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-10"},"Nextclade_pango":{"value":"FL.2.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.439964876735559}},"branch_attrs":{"mutations":{"nuc":["C21T","C28093T"],"ORF8":["S67F"]},"labels":{"aa":"ORF8: S67F"}}},{"name":"FL.2.5","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"FL.2.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.769057847106483}},"branch_attrs":{"mutations":{"nuc":["C22502G"],"S":["Q314E"]},"labels":{"aa":"S: Q314E","spike_mutations":"Q314E"}}},{"name":"FL.2.6","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"FL.2.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.16735626437147}},"branch_attrs":{"mutations":{"nuc":["T23485A","C25521T","A29683T"],"S":["N641K"]},"labels":{"aa":"S: N641K","spike_mutations":"N641K"}}},{"name":"internal_fc124546","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.1.2.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.2.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.0820741379320875}},"branch_attrs":{"mutations":{"nuc":["T21988C","A22995G","A29086G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"FL.2.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FL.2.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.0820741379320875}},"branch_attrs":{"mutations":{}}},{"name":"FL.2.2.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.2.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"FL.2.2.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.801144141489813}},"branch_attrs":{"mutations":{"nuc":["C22482T"],"S":["T307I"]},"labels":{"aa":"S: T307I","spike_mutations":"T307I"}}}]},{"name":"internal_fd8dfcda","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.1.2.3"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.2.3"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.183718863958415}},"branch_attrs":{"mutations":{"nuc":["A17615G"],"ORF1b":["K1383R"]},"labels":{"aa":"ORF1b: K1383R"}},"children":[{"name":"FL.2.3","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-12"},"Nextclade_pango":{"value":"FL.2.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.183718863958415}},"branch_attrs":{"mutations":{}}},{"name":"FL.2.3.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.17384857200595"},"partiallyAliased":{"value":"XBB.1.9.1.2.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.00936"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"FL.2.3.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254514849627949}},"branch_attrs":{"mutations":{"nuc":["C44T","A11188G","A22629C","C27128T"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}}}]},{"name":"internal_e875d4c6","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.1.2.7"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.2.7"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.925294688510123}},"branch_attrs":{"mutations":{"nuc":["G8117A"],"ORF1a":["A2618T"]},"labels":{"aa":"ORF1a: A2618T"}},"children":[{"name":"FL.2.7","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"FL.2.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.925294688510123}},"branch_attrs":{"mutations":{}}},{"name":"FL.2.7.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.2.7.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-4 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-12-21"},"Nextclade_pango":{"value":"FL.2.7.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.822575308036349}},"branch_attrs":{"mutations":{"nuc":["G11417T","A22995G"],"ORF1a":["V3718F"],"S":["K478R"]},"labels":{"aa":"ORF1a: V3718F; S: K478R","spike_mutations":"K478R"}}}]}]},{"name":"NODE_0000698","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.1.4"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.4"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.9211251241123986}},"branch_attrs":{"mutations":{"nuc":["G16741T"],"ORF1b":["V1092F"]},"labels":{"aa":"ORF1b: V1092F"}},"children":[{"name":"FL.4","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"FL.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9211251241123986}},"branch_attrs":{"mutations":{}}},{"name":"FL.4.10","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"FL.4.10"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.872981972019675}},"branch_attrs":{"mutations":{"nuc":["G24947A","A29040G"],"N":["K256R"],"S":["V1129I"]},"labels":{"aa":"N: K256R; S: V1129I","spike_mutations":"V1129I"}}},{"name":"FL.4.11","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"FL.4.11"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847072148998766}},"branch_attrs":{"mutations":{"nuc":["C2416T","C3773T","G25337T","C29274T"],"N":["T334I"],"ORF1a":["R1170C"],"S":["D1259Y"]},"labels":{"aa":"N: T334I; ORF1a: R1170C; S: D1259Y","spike_mutations":"D1259Y"}}},{"name":"FL.4.8","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.4.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"FL.4.8"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.59740103112976}},"branch_attrs":{"mutations":{"nuc":["A22995G","C29733-","T29760-","A29761-","C29762-","A29763-","G29764-","T29765-","G29766-","A29767-","A29768-","C29769-","A29770-","A29771-","T29772-","G29773-","C29774-","T29775-"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"internal_13d3b0d2","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.1.4"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.4"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.6967916532647362}},"branch_attrs":{"mutations":{"nuc":["A28615G"]}},"children":[{"name":"FL.4.2","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"FL.4.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7316600165885525}},"branch_attrs":{"mutations":{"nuc":["C3117T","C5654T","A6211G","C7420T","G22427A","T29602C"],"ORF1a":["T951I"],"S":["V289I"]},"labels":{"aa":"ORF1a: T951I; S: V289I","spike_mutations":"V289I"}}},{"name":"FL.4.3","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-20"},"Nextclade_pango":{"value":"FL.4.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.913204459485928}},"branch_attrs":{"mutations":{"nuc":["G7393T","G23858T"],"S":["A766S"]},"labels":{"aa":"S: A766S","spike_mutations":"A766S"}}},{"name":"FL.4.4","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.93509"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.4.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094813448445842}},"branch_attrs":{"mutations":{"nuc":["C4890T","A22995C","T24544C"],"ORF1a":["T1542I"],"S":["K478T"]},"labels":{"aa":"ORF1a: T1542I; S: K478T","spike_mutations":"K478T"}}},{"name":"FL.4.7","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.020665630365217"},"partiallyAliased":{"value":"XBB.1.9.1.4.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.97144"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.4.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["G1C","C7945T","A19314T","T22917G","T28135C"],"ORF8":["V81A"],"S":["L452R"]},"labels":{"aa":"ORF8: V81A; S: L452R","spike_mutations":"L452R"}}},{"name":"FL.4.9","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"FL.4.9"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.941597910466011}},"branch_attrs":{"mutations":{"nuc":["C17436T","T22322C","T22327G","A25910G"],"ORF3a":["D173G"],"S":["S254P"]},"labels":{"aa":"ORF3a: D173G; S: S254P","spike_mutations":"S254P"}}},{"name":"internal_12061207","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.1.4.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.4.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.082175095255121}},"branch_attrs":{"mutations":{"nuc":["A22911T"],"S":["N450I"]},"labels":{"aa":"S: N450I","spike_mutations":"N450I"}},"children":[{"name":"FL.4.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0043778394764258"},"partiallyAliased":{"value":"XBB.1.9.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.48144"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"FL.4.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.082175095255121}},"branch_attrs":{"mutations":{}}},{"name":"FL.4.1.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0066947319842137"},"partiallyAliased":{"value":"XBB.1.9.1.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.3348299999999999"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.4.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.008873191621377}},"branch_attrs":{"mutations":{"nuc":["T7122C","A22995G"],"ORF1a":["I2286T"],"S":["K478R"]},"labels":{"aa":"ORF1a: I2286T; S: K478R","spike_mutations":"K478R"}}}]},{"name":"NODE_0000701","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.1.4"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.4"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.650075905828057}},"branch_attrs":{"mutations":{"nuc":["C23635T"]}},"children":[{"name":"FL.4.5","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.4.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.362145664721455}},"branch_attrs":{"mutations":{"nuc":["A3948G","C28093T"],"ORF1a":["D1228G"],"ORF8":["S67F"]},"labels":{"aa":"ORF1a: D1228G; ORF8: S67F"}}},{"name":"FL.4.6","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.4.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"FL.4.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.347656280003616}},"branch_attrs":{"mutations":{"nuc":["T5098C","C13965T"]}}}]}]}]},{"name":"internal_291975ea","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.1.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.8429536703223075}},"branch_attrs":{"mutations":{"nuc":["G3242A","C12970T","C23664T"],"ORF1a":["G993S"],"S":["A701V"]},"labels":{"aa":"ORF1a: G993S; S: A701V","spike_mutations":"A701V"}},"children":[{"name":"FL.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"FL.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8429536703223075}},"branch_attrs":{"mutations":{}}},{"name":"FL.1.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.1.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777415427898098}},"branch_attrs":{"mutations":{"nuc":["C13197T"],"ORF1a":["T4311I"]},"labels":{"aa":"ORF1a: T4311I"}}},{"name":"FL.1.3","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.1.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.390125775934349}},"branch_attrs":{"mutations":{"nuc":["C44T","C5907T","G15285T"],"ORF1a":["T1881I"],"ORF1b":["M606I"]},"labels":{"aa":"ORF1a: T1881I; ORF1b: M606I"}}},{"name":"FL.1.7","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-06-29"},"Nextclade_pango":{"value":"FL.1.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606739993688397}},"branch_attrs":{"mutations":{"nuc":["T6148A","A22995G","A24670G","G25266T","G25696C","G29179C","C29311T"],"ORF3a":["E102Q"],"S":["K478R","C1235F"]},"labels":{"aa":"ORF3a: E102Q; S: K478R, C1235F","spike_mutations":"K478R, C1235F"}}},{"name":"FL.1.8","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9122168067881279"},"partiallyAliased":{"value":"XBB.1.9.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.78812"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"FL.1.8"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":1.5625},"placement_prior":{"value":-5.094813448445842}},"branch_attrs":{"mutations":{"nuc":["C449T","G5917A","C7164T","A13308G","C14877T","A22995G","C23123A","A26544G"],"M":["I8V"],"ORF1a":["P62S","T2300I","K4348R"],"S":["K478R","P521T"]},"labels":{"aa":"M: I8V; ORF1a: P62S, T2300I, K4348R; S: K478R, P521T","spike_mutations":"K478R, P521T"}}},{"name":"internal_18deba5f","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.1.1.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.1.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.213421500627939}},"branch_attrs":{"mutations":{"nuc":["A21371C"],"ORF1b":["Q2635P"]},"labels":{"aa":"ORF1b: Q2635P"}},"children":[{"name":"FL.1.1","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"FL.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.213421500627939}},"branch_attrs":{"mutations":{}}},{"name":"FL.1.1.1","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.1.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-29"},"Nextclade_pango":{"value":"FL.1.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907489368364018}},"branch_attrs":{"mutations":{"nuc":["C44T","C8655T","G23624T"],"ORF1a":["S2797F"],"S":["A688S"]},"labels":{"aa":"ORF1a: S2797F; S: A688S","spike_mutations":"A688S"}}}]},{"name":"internal_ec0ba103","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.1.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.886383775982125}},"branch_attrs":{"mutations":{"nuc":["G25186T"],"S":["Q1208H"]},"labels":{"aa":"S: Q1208H","spike_mutations":"Q1208H"}},"children":[{"name":"FL.1.4","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-05-23"},"Nextclade_pango":{"value":"FL.1.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.857238331173572}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}},{"name":"FL.1.6","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9140317449325946"},"partiallyAliased":{"value":"XBB.1.9.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.89211"},"designation_date":{"value":"2023-06-13"},"Nextclade_pango":{"value":"FL.1.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.0901101976850605}},"branch_attrs":{"mutations":{"nuc":["C44T","T23005A"],"S":["N481K"]},"labels":{"aa":"S: N481K","spike_mutations":"N481K"}}}]},{"name":"internal_187d562f","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.9.1.1.5"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.1.5"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.532229374624989}},"branch_attrs":{"mutations":{"nuc":["T2128C","A21137G","T22928C"],"ORF1b":["K2557R"],"S":["F456L"]},"labels":{"aa":"ORF1b: K2557R; S: F456L","spike_mutations":"F456L"}},"children":[{"name":"FL.1.5","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-06"},"Nextclade_pango":{"value":"FL.1.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.532229374624989}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000706","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.9.1.1.5.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.1.5.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-6.083440384892851}},"branch_attrs":{"mutations":{"nuc":["T23005A","T23245C","A23604G"],"S":["N481K","H681R"]},"labels":{"aa":"S: N481K, H681R","spike_mutations":"N481K, H681R"}},"children":[{"name":"FL.1.5.2","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0278360120133032"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.06800999999999986"},"designation_date":{"value":"2023-08-23"},"Nextclade_pango":{"value":"FL.1.5.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.02691946289609}},"branch_attrs":{"mutations":{"nuc":["T1177C"]}}},{"name":"NODE_0000707","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.1.1.5.2.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"KC.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.4306393776778465}},"branch_attrs":{"mutations":{"nuc":["C2433T","C12651T","T23030C","C26586T"],"ORF1a":["S723F","T4129I"],"S":["S490P"]},"labels":{"aa":"ORF1a: S723F, T4129I; S: S490P","spike_mutations":"S490P"}},"children":[{"name":"KC.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0278360120133032"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-0.15393000000000004"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"KC.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4306393776778465}},"branch_attrs":{"mutations":{}}},{"name":"KC.1.1","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0278360120133032"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-0.15393000000000004"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"KC.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509717710525144}},"branch_attrs":{"mutations":{"nuc":["C5956T","C25120T","G25244C"],"S":["V1228L"]},"labels":{"aa":"S: V1228L","spike_mutations":"V1228L"}}}]}]},{"name":"NODE_0000708","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.9.1.1.5.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.1.5.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.221193823388017}},"branch_attrs":{"mutations":{"nuc":["G20060T","A22995G"],"ORF1b":["S2198I"],"S":["K478R"]},"labels":{"aa":"ORF1b: S2198I; S: K478R","spike_mutations":"K478R"}},"children":[{"name":"FL.1.5.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-06-06"},"Nextclade_pango":{"value":"FL.1.5.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.221193823388017}},"branch_attrs":{"mutations":{}}},{"name":"HN.5","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"HN.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4249466997304}},"branch_attrs":{"mutations":{"nuc":["G23222A"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"HN.6","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"HN.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.339560678549757}},"branch_attrs":{"mutations":{"nuc":["C703T","A6063C","C18981T"],"ORF1a":["D1933A"]},"labels":{"aa":"ORF1a: D1933A"}}},{"name":"NODE_0000709","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.4"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"HN.4"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.613105847261463}},"branch_attrs":{"mutations":{"nuc":["C1473T","C5986T","G19962T","G28375A"],"ORF1a":["T403I"],"ORF9b":["G31E"]},"labels":{"aa":"ORF1a: T403I; ORF9b: G31E"}},"children":[{"name":"HN.4","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"HN.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.613105847261463}},"branch_attrs":{"mutations":{}}},{"name":"HN.4.2","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"HN.4.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3848070387348415}},"branch_attrs":{"mutations":{"nuc":["T1243C","G21604T","C23347T","C25710T"],"S":["Q14H"]},"labels":{"aa":"S: Q14H","spike_mutations":"Q14H"}}},{"name":"NODE_0000710","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.4.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"HN.4.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{"nuc":["G24620T"],"S":["A1020S"]},"labels":{"aa":"S: A1020S","spike_mutations":"A1020S"}},"children":[{"name":"HN.4.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"HN.4.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.731491629492093}},"branch_attrs":{"mutations":{}}},{"name":"HN.4.1.1","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1501547641225927"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.4.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.0007299999999998658"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"HN.4.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":11.111111},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["C11962T","C14184T","T18012C","T21765C","T22917G","G23222A"],"S":["I68T","L452R","E554K"]},"labels":{"aa":"S: I68T, L452R, E554K","spike_mutations":"I68T, L452R, E554K"}}}]}]},{"name":"NODE_0000711","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.9.1.1.5.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"FL.1.5.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.1609764125508946}},"branch_attrs":{"mutations":{"nuc":["C21036T"]}},"children":[{"name":"HN.1","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"HN.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.250548552359928}},"branch_attrs":{"mutations":{"nuc":["G21761T"],"S":["A67S"]},"labels":{"aa":"S: A67S","spike_mutations":"A67S"}}},{"name":"HN.7","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"HN.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8630742678026895}},"branch_attrs":{"mutations":{"nuc":["C6388T","C20115T"]}}},{"name":"HN.8","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"HN.8"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.597647681364568}},"branch_attrs":{"mutations":{"nuc":["A6391T","A27477T"],"ORF1a":["E2042D"]},"labels":{"aa":"ORF1a: E2042D"}}},{"name":"NODE_0000712","node_attrs":{"div":45,"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"HN.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.74638262812336}},"branch_attrs":{"mutations":{"nuc":["C4345T","C14134T"],"ORF1b":["P223S"]},"labels":{"aa":"ORF1b: P223S"}},"children":[{"name":"HN.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"HN.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.74638262812336}},"branch_attrs":{"mutations":{}}},{"name":"HN.2.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"HN.2.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.847072148998766}},"branch_attrs":{"mutations":{"nuc":["T13060G","A24069G"],"S":["Q836R"]},"labels":{"aa":"S: Q836R","spike_mutations":"Q836R"}}}]},{"name":"NODE_0000713","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.3"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"HN.3"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.117967507866338}},"branch_attrs":{"mutations":{"nuc":["T23042C","G29868-"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}},"children":[{"name":"HN.3","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0440737230479422"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-0.009539999999999936"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"HN.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.117967507866338}},"branch_attrs":{"mutations":{}}},{"name":"HN.3.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0440737230479422"},"partiallyAliased":{"value":"XBB.1.9.1.1.5.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"-0.009539999999999936"},"designation_date":{"value":"2023-10-17"},"Nextclade_pango":{"value":"HN.3.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["G1298T","A22320G"],"ORF1a":["G345C"],"S":["D253G"]},"labels":{"aa":"ORF1a: G345C; S: D253G","spike_mutations":"D253G"}}}]}]}]}]}]}]},{"name":"NODE_0000714","node_attrs":{"div":35,"partiallyAliased":{"value":"XBB.1.9.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"XBB.1.9.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.631542503551887}},"branch_attrs":{"mutations":{"nuc":["T44C","A16878T","T23018C","A27507C"],"S":["S486P"]},"labels":{"aa":"S: S486P","spike_mutations":"S486P"}},"children":[{"name":"EG.11","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"EG.11"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.999250316094649}},"branch_attrs":{"mutations":{"nuc":["C44T","G19326A","G23222A","A26319G"],"S":["E554K"]},"labels":{"aa":"S: E554K","spike_mutations":"E554K"}}},{"name":"EG.12","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-07"},"Nextclade_pango":{"value":"EG.12"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.509717710525144}},"branch_attrs":{"mutations":{"nuc":["C12741T","C21998A","G23222A","C25511T","G28857C"],"N":["R195T"],"ORF1a":["T4159I"],"ORF3a":["S40L"],"S":["Q146K","E554K"]},"labels":{"aa":"N: R195T; ORF1a: T4159I; ORF3a: S40L; S: Q146K, E554K","spike_mutations":"Q146K, E554K"}}},{"name":"EG.13","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-08-31"},"Nextclade_pango":{"value":"EG.13"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.163765486369541}},"branch_attrs":{"mutations":{"nuc":["G1T","G2659T","C8752T"],"ORF1a":["K798N"]},"labels":{"aa":"ORF1a: K798N"}}},{"name":"EG.14","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"EG.14"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.333152572399565}},"branch_attrs":{"mutations":{"nuc":["A17615G","C20016T","C25553T"],"ORF1b":["K1383R"],"ORF3a":["A54V"]},"labels":{"aa":"ORF1b: K1383R; ORF3a: A54V"}}},{"name":"EG.7","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9208590646614168"},"partiallyAliased":{"value":"XBB.1.9.2.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.1186099999999999"},"designation_date":{"value":"2023-06-09"},"Nextclade_pango":{"value":"EG.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.509822307700739}},"branch_attrs":{"mutations":{"nuc":["A6022G","A7857G","C8818T","C18452T","G22770A","C23099T","-29759G"],"ORF1a":["N2531S"],"ORF1b":["A1662V"],"S":["R403K","L513F"]},"labels":{"aa":"ORF1a: N2531S; ORF1b: A1662V; S: R403K, L513F","spike_mutations":"R403K, L513F"}}},{"name":"EG.8","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"EG.8"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8729581117646035}},"branch_attrs":{"mutations":{"nuc":["C21T","C7173T","-29759G"],"ORF1a":["S2303F"]},"labels":{"aa":"ORF1a: S2303F"}}},{"name":"XBB.1.9.2","node_attrs":{"div":35,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-03"},"Nextclade_pango":{"value":"XBB.1.9.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.631542503551887}},"branch_attrs":{"mutations":{"nuc":["-29759G"]}}},{"name":"internal_d6c86d9f","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.9.2.9"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.9"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.889857108286778}},"branch_attrs":{"mutations":{"nuc":["C4686T","A16373G","G22770A","C29347T"],"ORF1a":["T1474I"],"ORF1b":["N969S"],"S":["R403K"]},"labels":{"aa":"ORF1a: T1474I; ORF1b: N969S; S: R403K","spike_mutations":"R403K"}},"children":[{"name":"EG.9","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9391025132240644"},"partiallyAliased":{"value":"XBB.1.9.2.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.20938"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"EG.9"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208416502005214}},"branch_attrs":{"mutations":{"nuc":["C22593T","T24979C","A29125G"],"S":["A344V"]},"labels":{"aa":"S: A344V","spike_mutations":"A344V"}}},{"name":"EG.9.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9391025132240644"},"partiallyAliased":{"value":"XBB.1.9.2.9.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.17686"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"EG.9.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254514849627949}},"branch_attrs":{"mutations":{"nuc":["C44T","C13767T","G22592A"],"S":["A344T"]},"labels":{"aa":"S: A344T","spike_mutations":"A344T"}}}]},{"name":"internal_16d15670","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.2.10"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.10"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.428578208190697}},"branch_attrs":{"mutations":{"nuc":["G22592A","G22770A"],"S":["A344T","R403K"]},"labels":{"aa":"S: A344T, R403K","spike_mutations":"A344T, R403K"}},"children":[{"name":"EG.10","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9391025132240644"},"partiallyAliased":{"value":"XBB.1.9.2.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.17686"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"EG.10"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.428578208190697}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000717","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.9.2.10.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.10.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.595879217357447}},"branch_attrs":{"mutations":{"nuc":["C335T","T16548G","G21255T","T23042C","C23664T"],"ORF1a":["R24C"],"S":["S494P","A701V"]},"labels":{"aa":"ORF1a: R24C; S: S494P, A701V","spike_mutations":"S494P, A701V"}},"children":[{"name":"EG.10.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9601795916062488"},"partiallyAliased":{"value":"XBB.1.9.2.10.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.1256300000000001"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"EG.10.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.777415427898098}},"branch_attrs":{"mutations":{"nuc":["T8482C","T16251C","C28399T"],"ORF9b":["P39L"]},"labels":{"aa":"ORF9b: P39L"}}},{"name":"EG.10.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9601795916062488"},"partiallyAliased":{"value":"XBB.1.9.2.10.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.1256300000000001"},"designation_date":{"value":"2023-11-30"},"Nextclade_pango":{"value":"EG.10.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.072075319898702}},"branch_attrs":{"mutations":{"nuc":["G8372T","G11312A","C18175T"],"ORF1a":["V2703L","V3683I"],"ORF1b":["P1570S"]},"labels":{"aa":"ORF1a: V2703L, V3683I; ORF1b: P1570S"}}}]}]},{"name":"internal_dee45864","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.2.6"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.6"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.134059731656156}},"branch_attrs":{"mutations":{"nuc":["C1684T"]}},"children":[{"name":"EG.6","node_attrs":{"div":36,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"EG.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.134059731656156}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000719","node_attrs":{"div":39,"partiallyAliased":{"value":"XBB.1.9.2.6.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.6.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.852166236239965}},"branch_attrs":{"mutations":{"nuc":["C17766T","T22928C","T27346C"],"ORF6":["Y49H"],"S":["F456L"]},"labels":{"aa":"ORF6: Y49H; S: F456L","spike_mutations":"F456L"}},"children":[{"name":"EG.6.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-30"},"Nextclade_pango":{"value":"EG.6.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.852166236239965}},"branch_attrs":{"mutations":{}}},{"name":"EG.6.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0854609864513072"},"partiallyAliased":{"value":"XBB.1.9.2.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.07635999999999983"},"designation_date":{"value":"2023-09-07"},"Nextclade_pango":{"value":"EG.6.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.674757463383331}},"branch_attrs":{"mutations":{"nuc":["C5622T","G18194A","C22286A","G23012A","C23013A","C27881T"],"ORF1a":["P1786L"],"ORF1b":["R1576K"],"S":["L242I","A484K"]},"labels":{"aa":"ORF1a: P1786L; ORF1b: R1576K; S: L242I, A484K","spike_mutations":"L242I, A484K"}}},{"name":"EG.6.1.2","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.6.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"EG.6.1.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.073096305202432}},"branch_attrs":{"mutations":{"nuc":["C18570T","G23675A"],"S":["V705I"]},"labels":{"aa":"S: V705I","spike_mutations":"V705I"}}}]}]},{"name":"NODE_0000720","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.2.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.049774595134638}},"branch_attrs":{"mutations":{"nuc":["C44T","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}},"children":[{"name":"EG.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-04-04"},"Nextclade_pango":{"value":"EG.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.049774595134638}},"branch_attrs":{"mutations":{"nuc":["T44C"]}}},{"name":"EG.2.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.2.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-06-28"},"Nextclade_pango":{"value":"EG.2.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-9.097293832704947}},"branch_attrs":{"mutations":{"nuc":["T44C","T5165C","C5365T","C9133T","G18332T","C19032T","G22541A","C22663T","T22930A","A26120G","C27389T"],"ORF1a":["Y1634H"],"ORF1b":["R1622I"],"ORF3a":["H243R"],"S":["V327I","F456L"]},"labels":{"aa":"ORF1a: Y1634H; ORF1b: R1622I; ORF3a: H243R; S: V327I, F456L","spike_mutations":"V327I, F456L"}}},{"name":"EG.2.2","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.2.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"EG.2.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.828565351295565}},"branch_attrs":{"mutations":{"nuc":["C2370T","A6355T","C9430T","T18471C","A22474T","G28884C"],"N":["R204P"],"ORF1a":["A702V"],"S":["K304N"]},"labels":{"aa":"N: R204P; ORF1a: A702V; S: K304N","spike_mutations":"K304N"}}},{"name":"EG.2.3","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.2.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"EG.2.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129571956210234}},"branch_attrs":{"mutations":{"nuc":["C36T","A1230G","A17344G","A23786G"],"ORF1a":["K322R"],"ORF1b":["I1293V"],"S":["I742V"]},"labels":{"aa":"ORF1a: K322R; ORF1b: I1293V; S: I742V","spike_mutations":"I742V"}}},{"name":"EG.2.4","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.176216351680304"},"partiallyAliased":{"value":"XBB.1.9.2.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.86275"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"EG.2.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167391139161464}},"branch_attrs":{"mutations":{"nuc":["G7059A","C8818T","T19929C","C21549T","A22629C","C25521T","T27522C"],"ORF1a":["G2265D"],"S":["K356T"]},"labels":{"aa":"ORF1a: G2265D; S: K356T","spike_mutations":"K356T"}}},{"name":"EG.2.5","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.2.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"EG.2.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.36362174907267}},"branch_attrs":{"mutations":{"nuc":["G4561A","G23587C","C24748T"],"S":["Q675H"]},"labels":{"aa":"S: Q675H","spike_mutations":"Q675H"}}}]},{"name":"internal_57ebb6f5","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.2.4"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.4"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.352001340489814}},"branch_attrs":{"mutations":{"nuc":["G1C","C28651T"]}},"children":[{"name":"EG.4","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"EG.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.352001340489814}},"branch_attrs":{"mutations":{}}},{"name":"EG.4.1","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"EG.4.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.305639825776343}},"branch_attrs":{"mutations":{"nuc":["A24170G","G28628T"],"N":["A119S"],"S":["I870V"]},"labels":{"aa":"N: A119S; S: I870V","spike_mutations":"I870V"}}},{"name":"EG.4.2","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.4.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"EG.4.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":69},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606599660528681}},"branch_attrs":{"mutations":{"nuc":["C44T","T14652C","C23430T","G26199A"],"S":["A623V"]},"labels":{"aa":"S: A623V","spike_mutations":"A623V"}}},{"name":"EG.4.3","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.4.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-19"},"Nextclade_pango":{"value":"EG.4.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.032671299350727}},"branch_attrs":{"mutations":{"nuc":["G23401C","G25471C"],"ORF3a":["D27H"],"S":["Q613H"]},"labels":{"aa":"ORF3a: D27H; S: Q613H","spike_mutations":"Q613H"}}},{"name":"EG.4.4","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.4.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"EG.4.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.84079913938797}},"branch_attrs":{"mutations":{"nuc":["A4659G","C11095T","C16084T"],"ORF1a":["Y1465C"],"ORF1b":["H873Y"]},"labels":{"aa":"ORF1a: Y1465C; ORF1b: H873Y"}}},{"name":"EG.4.5","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9091699910668735"},"partiallyAliased":{"value":"XBB.1.9.2.4.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.8657900000000001"},"designation_date":{"value":"2023-09-24"},"Nextclade_pango":{"value":"EG.4.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":68},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.9226082190962686}},"branch_attrs":{"mutations":{"nuc":["A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]},{"name":"internal_132d0df5","node_attrs":{"div":36,"partiallyAliased":{"value":"XBB.1.9.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"XBB.1.9.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.225890923900502}},"branch_attrs":{"mutations":{"nuc":["C28928T"],"N":["L219F"]},"labels":{"aa":"N: L219F"}},"children":[{"name":"EG.3","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"EG.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.003560621023472}},"branch_attrs":{"mutations":{"nuc":["C8597T","-29759G"],"ORF1a":["L2778F"]},"labels":{"aa":"ORF1a: L2778F"}}},{"name":"NODE_0000723","node_attrs":{"div":37,"partiallyAliased":{"value":"XBB.1.9.2.1"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.1"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-3.5576863560327205}},"branch_attrs":{"mutations":{"nuc":["G23401T"],"S":["Q613H"]},"labels":{"aa":"S: Q613H","spike_mutations":"Q613H"}},"children":[{"name":"EG.1","node_attrs":{"div":37,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-02-19"},"Nextclade_pango":{"value":"EG.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.5576863560327205}},"branch_attrs":{"mutations":{}}},{"name":"EG.1.1","node_attrs":{"div":40,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-07"},"Nextclade_pango":{"value":"EG.1.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.163042494455683}},"branch_attrs":{"mutations":{"nuc":["C1473T","G21770T","A22496G"],"ORF1a":["T403I"],"S":["V70F","I312V"]},"labels":{"aa":"ORF1a: T403I; S: V70F, I312V","spike_mutations":"V70F, I312V"}}},{"name":"EG.1.2","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"EG.1.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.086379614203005}},"branch_attrs":{"mutations":{"nuc":["C27879T"],"ORF7b":["H42Y"]},"labels":{"aa":"ORF7b: H42Y"}}},{"name":"EG.1.3","node_attrs":{"div":39,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"EG.1.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.150622209312789}},"branch_attrs":{"mutations":{"nuc":["C3784T","A6613G"]}}},{"name":"EG.1.5","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"EG.1.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.677162658115333}},"branch_attrs":{"mutations":{"nuc":["C21855T"],"S":["S98F"]},"labels":{"aa":"S: S98F","spike_mutations":"S98F"}}},{"name":"EG.1.6","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-14"},"Nextclade_pango":{"value":"EG.1.6"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":70},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8393755607478632}},"branch_attrs":{"mutations":{"nuc":["G26235T"]}}},{"name":"EG.1.7","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"EG.1.7"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.121406536226135}},"branch_attrs":{"mutations":{"nuc":["A22029T"],"S":["E156V"]},"labels":{"aa":"S: E156V","spike_mutations":"E156V"}}},{"name":"EG.1.8","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-07-24"},"Nextclade_pango":{"value":"EG.1.8"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.094813448445842}},"branch_attrs":{"mutations":{"nuc":["G11842A","A13949G","C20429T","T21201C","C23481T","C27804T"],"ORF1b":["D161G","P2321L"],"S":["S640F"]},"labels":{"aa":"ORF1b: D161G, P2321L; S: S640F","spike_mutations":"S640F"}}},{"name":"internal_e85bc240","node_attrs":{"div":38,"partiallyAliased":{"value":"XBB.1.9.2.1.4"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.1.4"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.427943532991343}},"branch_attrs":{"mutations":{"nuc":["C7764T"],"ORF1a":["S2500F"]},"labels":{"aa":"ORF1a: S2500F"}},"children":[{"name":"EG.1.4","node_attrs":{"div":38,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"EG.1.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":71},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.427943532991343}},"branch_attrs":{"mutations":{}}},{"name":"EG.1.4.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"0.9070012868097488"},"partiallyAliased":{"value":"XBB.1.9.2.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"1.0124"},"designation_date":{"value":"2023-06-30"},"Nextclade_pango":{"value":"EG.1.4.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.793819799754328}},"branch_attrs":{"mutations":{"nuc":["C44T","C1528T","C6027T","G7100A","T16062G","C22212T","T25732G","C25989A"],"ORF1a":["P1921L","A2279T"],"ORF1b":["N865K"],"ORF3a":["F114V","D199E"],"S":["P217L"]},"labels":{"aa":"ORF1a: P1921L, A2279T; ORF1b: N865K; ORF3a: F114V, D199E; S: P217L","spike_mutations":"P217L"}}}]}]}]},{"name":"NODE_0000725","node_attrs":{"div":40,"partiallyAliased":{"value":"XBB.1.9.2.5"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.5"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.640695931831923}},"branch_attrs":{"mutations":{"nuc":["C2334T","C9693T","C22480T","T22930A","C29625T"],"ORF1a":["A690V","A3143V"],"S":["F456L"]},"labels":{"aa":"ORF1a: A690V, A3143V; S: F456L","spike_mutations":"F456L"}},"children":[{"name":"EG.5","node_attrs":{"div":41,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-04-22"},"Nextclade_pango":{"value":"EG.5"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.799643314676628}},"branch_attrs":{"mutations":{"nuc":["C23481T"],"S":["S640F"]},"labels":{"aa":"S: S640F","spike_mutations":"S640F"}}},{"name":"NODE_0000726","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.9.2.5.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.5.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-4.290942372329689}},"branch_attrs":{"mutations":{"nuc":["T5152C","C28754T"],"N":["L161F"]},"labels":{"aa":"N: L161F"}},"children":[{"name":"EG.5.2","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-24"},"Nextclade_pango":{"value":"EG.5.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.290942372329689}},"branch_attrs":{"mutations":{}}},{"name":"EG.5.2.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"EG.5.2.2"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.492762456001869}},"branch_attrs":{"mutations":{"nuc":["C8290T","C12781T","C14183T"],"ORF1b":["T239I"]},"labels":{"aa":"ORF1b: T239I"}}},{"name":"EG.5.2.3","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.2.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"EG.5.2.3"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.743411045563663}},"branch_attrs":{"mutations":{"nuc":["C23673T","A25094G"],"S":["S704L","N1178D"]},"labels":{"aa":"S: S704L, N1178D","spike_mutations":"S704L, N1178D"}}},{"name":"NODE_0000727","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.2"},"clade_membership":{"value":"23D"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23D (XBB.1.9)"},"Nextclade_pango":{"value":"EG.5.2"},"clade_nextstrain":{"value":"23D"},"placement_prior":{"value":-5.160860513202513}},"branch_attrs":{"mutations":{"nuc":["C3602T","A6729G","C11518T","A25744G"],"ORF1a":["H1113Y","N2155S"],"ORF3a":["I118V"]},"labels":{"aa":"ORF1a: H1113Y, N2155S; ORF3a: I118V"}},"children":[{"name":"EG.5.2.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-25"},"Nextclade_pango":{"value":"EG.5.2.1"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.5321026328608625}},"branch_attrs":{"mutations":{"nuc":["C832T","C23673T"],"S":["S704L"]},"labels":{"aa":"S: S704L","spike_mutations":"S704L"}}},{"name":"EG.5.2.4","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.2.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23D"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23D (XBB.1.9)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"EG.5.2.4"},"clade_nextstrain":{"value":"23D"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606695553219501}},"branch_attrs":{"mutations":{"nuc":["A23598G"],"S":["K679R"]},"labels":{"aa":"S: K679R","spike_mutations":"K679R"}}}]}]},{"name":"NODE_0000728","node_attrs":{"div":42,"partiallyAliased":{"value":"XBB.1.9.2.5.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.379543567066268}},"branch_attrs":{"mutations":{"nuc":["A18492G","G21718T"],"S":["Q52H"]},"labels":{"aa":"S: Q52H","clade":"23F","spike_mutations":"Q52H"}},"children":[{"name":"EG.5.1","node_attrs":{"div":42,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-05-07"},"Nextclade_pango":{"value":"EG.5.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.379543567066268}},"branch_attrs":{"mutations":{}}},{"name":"EG.5.1.10","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-26"},"Nextclade_pango":{"value":"EG.5.1.10"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.756503338820298}},"branch_attrs":{"mutations":{"nuc":["C3622T","A11537G"],"ORF1a":["I3758V"]},"labels":{"aa":"ORF1a: I3758V"}}},{"name":"EG.5.1.12","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.12"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.274743835245167}},"branch_attrs":{"mutations":{"nuc":["G1A","C28909T"]}}},{"name":"EG.5.1.13","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.13"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.8098834207827412}},"branch_attrs":{"mutations":{"nuc":["C12439T"]}}},{"name":"EG.5.1.14","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.14"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":72},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.295867570928444}},"branch_attrs":{"mutations":{"nuc":["C16017T","C19524T"]}}},{"name":"EG.5.1.15","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.15"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.200343659658663}},"branch_attrs":{"mutations":{"nuc":["C2523T"],"ORF1a":["T753I"]},"labels":{"aa":"ORF1a: T753I"}}},{"name":"EG.5.1.16","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.16"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9028219656321643}},"branch_attrs":{"mutations":{"nuc":["C20759T"],"ORF1b":["A2431V"]},"labels":{"aa":"ORF1b: A2431V"}}},{"name":"EG.5.1.17","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.17"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.7587279483019245}},"branch_attrs":{"mutations":{"nuc":["G22927C","C29762T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}}},{"name":"EG.5.1.18","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.18"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.398870108269148}},"branch_attrs":{"mutations":{"nuc":["G9269A","G26051T"],"ORF1a":["G3002S"],"ORF3a":["S220I"]},"labels":{"aa":"ORF1a: G3002S; ORF3a: S220I"}}},{"name":"EG.5.1.19","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"EG.5.1.19"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.4551973434659775}},"branch_attrs":{"mutations":{"nuc":["T26171A"],"ORF3a":["M260K"]},"labels":{"aa":"ORF3a: M260K"}}},{"name":"EG.5.1.2","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"EG.5.1.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.3414119358581065}},"branch_attrs":{"mutations":{"nuc":["C44T","G18397A"],"ORF1b":["V1644I"]},"labels":{"aa":"ORF1b: V1644I"}}},{"name":"EG.5.1.5","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"EG.5.1.5"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.48452076125926}},"branch_attrs":{"mutations":{"nuc":["C44T","G199A","C10142A","C17288T","T20512G","C29870A"],"ORF1a":["L3293I"],"ORF1b":["T1274I","L2349V"]},"labels":{"aa":"ORF1a: L3293I; ORF1b: T1274I, L2349V"}}},{"name":"EG.5.1.7","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-08-25"},"Nextclade_pango":{"value":"EG.5.1.7"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.333030189540175}},"branch_attrs":{"mutations":{"nuc":["A22396T"],"S":["K278N"]},"labels":{"aa":"S: K278N","spike_mutations":"K278N"}}},{"name":"EG.5.1.9","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-17"},"Nextclade_pango":{"value":"EG.5.1.9"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.569309418451065}},"branch_attrs":{"mutations":{"nuc":["A3210G","C8947T","C22088T","C29774T"],"ORF1a":["D982G"],"S":["L176F"]},"labels":{"aa":"ORF1a: D982G; S: L176F","spike_mutations":"L176F"}}},{"name":"internal_d30fa253","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.9.2.5.1.4"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.4"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.681332753306466}},"branch_attrs":{"mutations":{"nuc":["A21137G"],"ORF1b":["K2557R"]},"labels":{"aa":"ORF1b: K2557R"}},"children":[{"name":"EG.5.1.4","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"EG.5.1.4"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.681332753306466}},"branch_attrs":{"mutations":{}}},{"name":"JJ.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.4.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"JJ.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.266486690838347}},"branch_attrs":{"mutations":{"nuc":["C44T","G22927T","A25531G","C26111T"],"ORF3a":["I47V","P240L"],"S":["L455F"]},"labels":{"aa":"ORF3a: I47V, P240L; S: L455F","spike_mutations":"L455F"}}}]},{"name":"internal_356adb2d","node_attrs":{"div":43,"partiallyAliased":{"value":"XBB.1.9.2.5.1.11"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.11"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.371831265351487}},"branch_attrs":{"mutations":{"nuc":["A22106C"],"S":["K182Q"]},"labels":{"aa":"S: K182Q","spike_mutations":"K182Q"}},"children":[{"name":"EG.5.1.11","node_attrs":{"div":43,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"EG.5.1.11"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.371831265351487}},"branch_attrs":{"mutations":{}}},{"name":"internal_a3af6ee5","node_attrs":{"div":45,"partiallyAliased":{"value":"XBB.1.9.2.5.1.11.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"JR.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-6.5094745841941375}},"branch_attrs":{"mutations":{"nuc":["A22995G","A25664G"],"ORF3a":["Y91C"],"S":["K478R"]},"labels":{"aa":"ORF3a: Y91C; S: K478R","spike_mutations":"K478R"}},"children":[{"name":"JR.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.022628008518114"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.041689999999999984"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"JR.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.5094745841941375}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000732","node_attrs":{"div":49,"partiallyAliased":{"value":"XBB.1.9.2.5.1.11.1.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"JR.1.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.90058266197862}},"branch_attrs":{"mutations":{"nuc":["C1613T","G20995T","G22927C","A27388C"],"ORF1a":["L450F"],"ORF1b":["G2510C"],"S":["L455F"]},"labels":{"aa":"ORF1a: L450F; ORF1b: G2510C; S: L455F","spike_mutations":"L455F"}},"children":[{"name":"JR.1.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.11.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"JR.1.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.90058266197862}},"branch_attrs":{"mutations":{}}},{"name":"JR.1.1.1","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.345048885480618"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.11.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.73257"},"designation_date":{"value":"2023-11-29"},"Nextclade_pango":{"value":"JR.1.1.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.571936865296451}},"branch_attrs":{"mutations":{"nuc":["C9447T","A22628C"],"ORF1a":["A3061V"],"S":["K356Q"]},"labels":{"aa":"ORF1a: A3061V; S: K356Q","spike_mutations":"K356Q"}}}]}]}]},{"name":"NODE_0000733","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.9.2.5.1.8"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.8"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.639435219601877}},"branch_attrs":{"mutations":{"nuc":["G22927T","C29762T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}},"children":[{"name":"EG.5.1.8","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-11"},"Nextclade_pango":{"value":"EG.5.1.8"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.639435219601877}},"branch_attrs":{"mutations":{}}},{"name":"KB.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"KB.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.74365899783543}},"branch_attrs":{"mutations":{"nuc":["G10900A","A23523T"],"S":["E654V"]},"labels":{"aa":"S: E654V","spike_mutations":"E654V"}}},{"name":"NODE_0000734","node_attrs":{"div":45,"partiallyAliased":{"value":"XBB.1.9.2.5.1.8"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.8"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.909946015286109}},"branch_attrs":{"mutations":{"nuc":["C12100G"]}},"children":[{"name":"KB.2","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.8.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"KB.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.922484051220205}},"branch_attrs":{"mutations":{"nuc":["C14676A","G22203A"],"S":["R214H"]},"labels":{"aa":"S: R214H","spike_mutations":"R214H"}}},{"name":"KB.3","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.8.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"KB.3"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.926244120138253}},"branch_attrs":{"mutations":{"nuc":["G21809A","C27603T"],"S":["A83T"]},"labels":{"aa":"S: A83T","spike_mutations":"A83T"}}},{"name":"KB.4","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.8.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"KB.4"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062659251597256}},"branch_attrs":{"mutations":{"nuc":["C44T","C21846T"],"S":["T95I"]},"labels":{"aa":"S: T95I","spike_mutations":"T95I"}}}]}]},{"name":"NODE_0000735","node_attrs":{"div":44,"partiallyAliased":{"value":"XBB.1.9.2.5.1.3"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.3"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.3729579748820018}},"branch_attrs":{"mutations":{"nuc":["C1889T","C22570T"],"ORF1a":["R542C"]},"labels":{"aa":"ORF1a: R542C"}},"children":[{"name":"EG.5.1.3","node_attrs":{"div":44,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"EG.5.1.3"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.3729579748820018}},"branch_attrs":{"mutations":{}}},{"name":"JG.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"JG.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.489304179848544}},"branch_attrs":{"mutations":{"nuc":["C23757T"],"S":["T732I"]},"labels":{"aa":"S: T732I","spike_mutations":"T732I"}}},{"name":"JG.2","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-04"},"Nextclade_pango":{"value":"JG.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.6070674255442805}},"branch_attrs":{"mutations":{"nuc":["G21786T"],"S":["G75V"]},"labels":{"aa":"S: G75V","spike_mutations":"G75V"}}},{"name":"JG.4","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JG.4"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.547062280890787}},"branch_attrs":{"mutations":{"nuc":["C1684T"]}}},{"name":"NODE_0000736","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.3"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"JG.3"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.64258468161905}},"branch_attrs":{"mutations":{"nuc":["C7086T","G22927T","C23673T"],"ORF1a":["T2274I"],"S":["L455F","S704L"]},"labels":{"aa":"ORF1a: T2274I; S: L455F, S704L","spike_mutations":"L455F, S704L"}},"children":[{"name":"JG.3","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-17"},"Nextclade_pango":{"value":"JG.3"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.64258468161905}},"branch_attrs":{"mutations":{}}},{"name":"JG.3.1","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"JG.3.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.9657619363300642}},"branch_attrs":{"mutations":{"nuc":["C7932T","C22482T","C25810T"],"ORF1a":["S2556L"],"ORF3a":["L140F"],"S":["T307I"]},"labels":{"aa":"ORF1a: S2556L; ORF3a: L140F; S: T307I","spike_mutations":"T307I"}}},{"name":"JG.3.2","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1490866672931315"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.4253100000000001"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"JG.3.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.14504822168406}},"branch_attrs":{"mutations":{"nuc":["C44T","A22910G"],"S":["N450D"]},"labels":{"aa":"S: N450D","spike_mutations":"N450D"}}},{"name":"JG.3.3","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-17"},"Nextclade_pango":{"value":"JG.3.3"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.844971467547876}},"branch_attrs":{"mutations":{"nuc":["C44T","G21809T"],"S":["A83S"]},"labels":{"aa":"S: A83S","spike_mutations":"A83S"}}},{"name":"JG.3.4","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0410200039663366"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.3.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.5133399999999999"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"JG.3.4"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.835608275360278}},"branch_attrs":{"mutations":{"nuc":["C44T","C2462T","A22995G"],"S":["K478R"]},"labels":{"aa":"S: K478R","spike_mutations":"K478R"}}}]}]},{"name":"NODE_0000737","node_attrs":{"div":45,"partiallyAliased":{"value":"XBB.1.9.2.5.1.6"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.6"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.7361439669190544}},"branch_attrs":{"mutations":{"nuc":["C44T","C5835T","C22033A"],"ORF1a":["S1857L"],"S":["F157L"]},"labels":{"aa":"ORF1a: S1857L; S: F157L","spike_mutations":"F157L"}},"children":[{"name":"EG.5.1.6","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"EG.5.1.6"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.7361439669190544}},"branch_attrs":{"mutations":{}}},{"name":"HV.2","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-12-17"},"Nextclade_pango":{"value":"HV.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":6.25},"placement_prior":{"value":-5.052440381707652}},"branch_attrs":{"mutations":{"nuc":["T44C","C925T","G14559A","C14919A","G22927T","C27161T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}}},{"name":"NODE_0000738","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HV.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.1657461571114074}},"branch_attrs":{"mutations":{"nuc":["T22917G","C29784T"],"S":["L452R"]},"labels":{"aa":"S: L452R","spike_mutations":"L452R"}},"children":[{"name":"HV.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2023-08-02"},"Nextclade_pango":{"value":"HV.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.1657461571114074}},"branch_attrs":{"mutations":{}}},{"name":"HV.1.10","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.025979999999999802"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"HV.1.10"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.068608408971799}},"branch_attrs":{"mutations":{"nuc":["C15720T","C22916T"],"S":["R452W"]},"labels":{"aa":"S: R452W","spike_mutations":"R452W"}}},{"name":"HV.1.11","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.2090449698420458"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.0887599999999999"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"HV.1.11"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.518187460785518}},"branch_attrs":{"mutations":{"nuc":["C21952T","A22910G"],"S":["N450D"]},"labels":{"aa":"S: N450D","spike_mutations":"N450D"}}},{"name":"HV.1.3","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.21974"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HV.1.3"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.006548751085954}},"branch_attrs":{"mutations":{"nuc":["A23040T"],"S":["Q493L"]},"labels":{"aa":"S: Q493L","spike_mutations":"Q493L"}}},{"name":"HV.1.4","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HV.1.4"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.407736644569362}},"branch_attrs":{"mutations":{"nuc":["G24794T","C27945T"],"ORF8":["Q18*"],"S":["A1078S"]},"labels":{"aa":"ORF8: Q18*; S: A1078S","spike_mutations":"A1078S"}}},{"name":"HV.1.5","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HV.1.5"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.553657617236704}},"branch_attrs":{"mutations":{"nuc":["C1912T","C25355T"],"S":["L1265F"]},"labels":{"aa":"S: L1265F","spike_mutations":"L1265F"}}},{"name":"HV.1.7","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HV.1.7"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.957557489363538}},"branch_attrs":{"mutations":{"nuc":["T6682C","C22224T","T23198C"],"S":["S221L"]},"labels":{"aa":"S: S221L","spike_mutations":"S221L"}}},{"name":"HV.1.8","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"HV.1.8"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.062659251597256}},"branch_attrs":{"mutations":{"nuc":["C1093T","C1302T","C22185T"],"ORF1a":["T346I"],"S":["T208M"]},"labels":{"aa":"ORF1a: T346I; S: T208M","spike_mutations":"T208M"}}},{"name":"HV.1.9","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2024-01-09"},"Nextclade_pango":{"value":"HV.1.9"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.106123608795641}},"branch_attrs":{"mutations":{"nuc":["C346T","A22194T","C22624T","C24912T"],"S":["N211I","T1117I"]},"labels":{"aa":"S: N211I, T1117I","spike_mutations":"N211I, T1117I"}}},{"name":"internal_2378868c","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HV.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.113355892034241}},"branch_attrs":{"mutations":{"nuc":["C12513T"],"ORF1a":["T4083M"]},"labels":{"aa":"ORF1a: T4083M"}},"children":[{"name":"HV.1.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.216642798906664"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.048559999999999943"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HV.1.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.089552743244277}},"branch_attrs":{"mutations":{"nuc":["A22893C"],"S":["K444T"]},"labels":{"aa":"S: K444T","spike_mutations":"K444T"}}},{"name":"HV.1.2","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.2155503777934975"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.38161000000000006"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HV.1.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.557253422375321}},"branch_attrs":{"mutations":{"nuc":["C23103T"],"S":["S514F"]},"labels":{"aa":"S: S514F","spike_mutations":"S514F"}}}]},{"name":"NODE_0000740","node_attrs":{"div":50,"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.6"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HV.1.6"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.754711465789942}},"branch_attrs":{"mutations":{"nuc":["C5646T","C6317T","C26885T"],"ORF1a":["T1794I","P2018S"]},"labels":{"aa":"ORF1a: T1794I, P2018S"}},"children":[{"name":"HV.1.6","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HV.1.6"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.754711465789942}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000741","node_attrs":{"div":52,"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.6.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HV.1.6.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.279360145573761}},"branch_attrs":{"mutations":{"nuc":["C11020T","C23673T"],"S":["S704L"]},"labels":{"aa":"S: S704L","spike_mutations":"S704L"}},"children":[{"name":"HV.1.6.1","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.6.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HV.1.6.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":78},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.279360145573761}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000742","node_attrs":{"div":53,"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.6.1.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"KL.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.231057667396864}},"branch_attrs":{"mutations":{"nuc":["G22894T"],"S":["K444N"]},"labels":{"aa":"S: K444N","spike_mutations":"K444N"}},"children":[{"name":"KL.1","node_attrs":{"div":53,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.216642798906664"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.6.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.008039999999999839"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"KL.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.231057667396864}},"branch_attrs":{"mutations":{}}},{"name":"KL.1.1","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.216642798906664"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.6.1.6.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.008039999999999839"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"KL.1.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":82},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.907681112961623}},"branch_attrs":{"mutations":{"nuc":["G19101T","C24863T","T25510C"],"ORF1b":["Q1878H"],"ORF3a":["S40P"],"S":["H1101Y"]},"labels":{"aa":"ORF1b: Q1878H; ORF3a: S40P; S: H1101Y","spike_mutations":"H1101Y"}}}]}]}]}]}]},{"name":"NODE_0000743","node_attrs":{"div":45,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.1718849728690484}},"branch_attrs":{"mutations":{"nuc":["C6541T","G13627A","C25572T"],"ORF1b":["D54N"]},"labels":{"aa":"ORF1b: D54N"}},"children":[{"name":"EG.5.1.1","node_attrs":{"div":45,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-06-20"},"Nextclade_pango":{"value":"EG.5.1.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.1718849728690484}},"branch_attrs":{"mutations":{}}},{"name":"HK.12","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.319590768088469"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18525999999999987"},"designation_date":{"value":"2023-10-12"},"Nextclade_pango":{"value":"HK.12"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.466893215321218}},"branch_attrs":{"mutations":{"nuc":["C44T","A22629C"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}}},{"name":"HK.17","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0421028447648624"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.17"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.13706999999999997"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.17"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.360882767650253}},"branch_attrs":{"mutations":{"nuc":["T23042C"],"S":["S494P"]},"labels":{"aa":"S: S494P","spike_mutations":"S494P"}}},{"name":"HK.18","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1479938015619444"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.18"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.14733999999999992"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.18"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.252611890055789}},"branch_attrs":{"mutations":{"nuc":["T22917G","C28292A"],"N":["Q7K"],"S":["L452R"]},"labels":{"aa":"N: Q7K; S: L452R","spike_mutations":"L452R"}}},{"name":"HK.19","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.19"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.19"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.596736196624792}},"branch_attrs":{"mutations":{"nuc":["C22033A"],"S":["F157L"]},"labels":{"aa":"S: F157L","spike_mutations":"F157L"}}},{"name":"HK.21","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0724816977318012"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.21"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.1481699999999999"},"designation_date":{"value":"2023-11-12"},"Nextclade_pango":{"value":"HK.21"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.3586394020511285}},"branch_attrs":{"mutations":{"nuc":["C20016T","C22971A","T23948C"],"S":["T470N","Y796H"]},"labels":{"aa":"S: T470N, Y796H","spike_mutations":"T470N, Y796H"}}},{"name":"HK.22","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1689868770232006"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.22"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.49366"},"designation_date":{"value":"2023-11-12"},"Nextclade_pango":{"value":"HK.22"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.930037027797424}},"branch_attrs":{"mutations":{"nuc":["C44T","C2662T","T2698C","A3019G","T15408C","G18332A","T22917A","G22927T","T24709C","G25407T"],"ORF1b":["R1622K"],"ORF3a":["M5I"],"S":["L452Q","L455F"]},"labels":{"aa":"ORF1b: R1622K; ORF3a: M5I; S: L452Q, L455F","spike_mutations":"L452Q, L455F"}}},{"name":"HK.25","node_attrs":{"div":63,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.319590768088469"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.25"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18525999999999987"},"designation_date":{"value":"2023-11-27"},"Nextclade_pango":{"value":"HK.25"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":82},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.606739993688397}},"branch_attrs":{"mutations":{"nuc":["T499A","C1191T","T2633C","C3686T","C4093A","A6601C","G11516T","C13019T","A22629C","A23604G","G25606T","C26534T","A27107C","C27600T","T28251G","C28253T","A28254C","C29367T"],"N":["P365L"],"ORF1a":["P309L","H1141Y","E2112D","V3751F"],"ORF3a":["A72S"],"ORF8":["F120V","I121L"],"S":["K356T","H681R"]},"labels":{"aa":"N: P365L; ORF1a: P309L, H1141Y, E2112D, V3751F; ORF3a: A72S; ORF8: F120V, I121L; S: K356T, H681R","spike_mutations":"K356T, H681R"}}},{"name":"HK.28","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.28"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.28"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.10232959823983}},"branch_attrs":{"mutations":{"nuc":["C19170T"]}}},{"name":"HK.29","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.29"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.29"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.224379041458478}},"branch_attrs":{"mutations":{"nuc":["G7791A"],"ORF1a":["G2509D"]},"labels":{"aa":"ORF1a: G2509D"}}},{"name":"HK.30","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.30"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.30"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":73},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.217911357747151}},"branch_attrs":{"mutations":{"nuc":["T26609C"]}}},{"name":"HK.31","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.31"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.31"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.213962524555034}},"branch_attrs":{"mutations":{"nuc":["G2075A"],"ORF1a":["G604S"]},"labels":{"aa":"ORF1a: G604S"}}},{"name":"HK.32","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.32"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.32"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.377620806354329}},"branch_attrs":{"mutations":{"nuc":["A21603G"],"S":["Q14R"]},"labels":{"aa":"S: Q14R","spike_mutations":"Q14R"}}},{"name":"HK.4","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HK.4"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8153079273951676}},"branch_attrs":{"mutations":{"nuc":["C24210T"],"S":["T883I"]},"labels":{"aa":"S: T883I","spike_mutations":"T883I"}}},{"name":"HK.5","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HK.5"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.61753347975344}},"branch_attrs":{"mutations":{"nuc":["G23593C"],"S":["Q677H"]},"labels":{"aa":"S: Q677H","spike_mutations":"Q677H"}}},{"name":"HK.7","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-08-30"},"Nextclade_pango":{"value":"HK.7"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.650772653245442}},"branch_attrs":{"mutations":{"nuc":["A22005C"],"S":["N148T"]},"labels":{"aa":"S: N148T","spike_mutations":"N148T"}}},{"name":"internal_41ab7e5c","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.27851564669442}},"branch_attrs":{"mutations":{"nuc":["G22332T"],"S":["G257V"]},"labels":{"aa":"S: G257V","spike_mutations":"G257V"}},"children":[{"name":"HK.1","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HK.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.27851564669442}},"branch_attrs":{"mutations":{}}},{"name":"HK.1.2","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.1.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":77},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.361587330794301}},"branch_attrs":{"mutations":{"nuc":["C44T","G6320A","C11704T","C22482T","G22927C"],"ORF1a":["V2019I"],"S":["T307I","L455F"]},"labels":{"aa":"ORF1a: V2019I; S: T307I, L455F","spike_mutations":"T307I, L455F"}}}]},{"name":"internal_2e7b44ef","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.11"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.11"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.722826473066703}},"branch_attrs":{"mutations":{"nuc":["C44T","G22112A"],"S":["G184S"]},"labels":{"aa":"S: G184S","spike_mutations":"G184S"}},"children":[{"name":"HK.11","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-04"},"Nextclade_pango":{"value":"HK.11"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.722826473066703}},"branch_attrs":{"mutations":{}}},{"name":"HK.11.1","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.11.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HK.11.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.674134218825619}},"branch_attrs":{"mutations":{"nuc":["T4789A","T13228C","G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}}}]},{"name":"internal_ce3ef6fb","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.2"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.2"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.724375130561566}},"branch_attrs":{"mutations":{"nuc":["C44T","G21604T"],"S":["Q14H"]},"labels":{"aa":"S: Q14H","spike_mutations":"Q14H"}},"children":[{"name":"HK.2","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HK.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.724375130561566}},"branch_attrs":{"mutations":{}}},{"name":"HK.2.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HK.2.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.387920587429107}},"branch_attrs":{"mutations":{"nuc":["G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}}}]},{"name":"internal_78bcc78c","node_attrs":{"div":50,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.20"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.20"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.758145792689194}},"branch_attrs":{"mutations":{"nuc":["C44T","C5575T","C6695T","C9448A","G22927T"],"ORF1a":["P2144S"],"S":["L455F"]},"labels":{"aa":"ORF1a: P2144S; S: L455F","spike_mutations":"L455F"}},"children":[{"name":"HK.20","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.20"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-02"},"Nextclade_pango":{"value":"HK.20"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.758145792689194}},"branch_attrs":{"mutations":{}}},{"name":"HK.20.1","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0504720869482909"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.20.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.6088199999999999"},"designation_date":{"value":"2023-11-02"},"Nextclade_pango":{"value":"HK.20.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.355504974277566}},"branch_attrs":{"mutations":{"nuc":["G23006C"],"S":["G482R"]},"labels":{"aa":"S: G482R","spike_mutations":"G482R"}}}]},{"name":"internal_1ede7aef","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.24"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.24"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.356891432963125}},"branch_attrs":{"mutations":{"nuc":["C44T","G23522A"],"S":["E654K"]},"labels":{"aa":"S: E654K","spike_mutations":"E654K"}},"children":[{"name":"HK.24","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.24"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.24"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.356891432963125}},"branch_attrs":{"mutations":{}}},{"name":"HK.24.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.24.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.24.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.079615197574234}},"branch_attrs":{"mutations":{"nuc":["G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}}}]},{"name":"internal_9bba602f","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.13"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.13"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.279350054358806}},"branch_attrs":{"mutations":{"nuc":["G22927C"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}},"children":[{"name":"HK.13","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.13"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.279350054358806}},"branch_attrs":{"mutations":{}}},{"name":"HK.13.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.13.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.13.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.465483035486112}},"branch_attrs":{"mutations":{"nuc":["C44T","C13378T","A24604G"]}}},{"name":"HK.13.2","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.13.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.13.2"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.884566281392782}},"branch_attrs":{"mutations":{"nuc":["C44T","C6016T","T23953A","G25019C"],"S":["F797L","D1153H"]},"labels":{"aa":"S: F797L, D1153H","spike_mutations":"F797L, D1153H"}}}]},{"name":"internal_656de736","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.23"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.23"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.126648857119494}},"branch_attrs":{"mutations":{"nuc":["C28087T"],"ORF8":["A65V"]},"labels":{"aa":"ORF8: A65V"}},"children":[{"name":"HK.23","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.23"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.23"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.126648857119494}},"branch_attrs":{"mutations":{}}},{"name":"NODE_0000751","node_attrs":{"div":52,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.23.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.23.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.148086686592558}},"branch_attrs":{"mutations":{"nuc":["G1C","C8982A","C16887T","T19710C","G22927T","C27213T"],"ORF1a":["T2906N"],"S":["L455F"]},"labels":{"aa":"ORF1a: T2906N; S: L455F","spike_mutations":"L455F"}},"children":[{"name":"HK.23.1","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.23.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.23.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.148086686592558}},"branch_attrs":{"mutations":{}}},{"name":"HK.23.1.1","node_attrs":{"div":58,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.254878560420474"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.23.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.48614000000000007"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.23.1.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":81},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.50979442794143}},"branch_attrs":{"mutations":{"nuc":["C44T","G1067T","A1290G","G1661A","G20057A","G22604T"],"ORF1a":["G268W","E342G","D466N"],"ORF1b":["G2197D"],"S":["A348S"]},"labels":{"aa":"ORF1a: G268W, E342G, D466N; ORF1b: G2197D; S: A348S","spike_mutations":"A348S"}}}]}]},{"name":"internal_06b86205","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-5.009738067821022}},"branch_attrs":{"mutations":{"nuc":["T14988C"]}},"children":[{"name":"HK.6","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"HK.6"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.777985066848699}},"branch_attrs":{"mutations":{"nuc":["G6032A","A22320G","A23014T"],"ORF1a":["A1923T"],"S":["D253G"]},"labels":{"aa":"ORF1a: A1923T; S: D253G","spike_mutations":"D253G"}}},{"name":"internal_01437a73","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.26"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.26"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.427092949127847}},"branch_attrs":{"mutations":{"nuc":["G22927T","C25546A"],"ORF3a":["L52I"],"S":["L455F"]},"labels":{"aa":"ORF3a: L52I; S: L455F","spike_mutations":"L455F"}},"children":[{"name":"HK.26","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.26"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.26"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.427092949127847}},"branch_attrs":{"mutations":{}}},{"name":"HK.26.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.26.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.26.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.129603924973818}},"branch_attrs":{"mutations":{"nuc":["C22986T"],"S":["A475V"]},"labels":{"aa":"S: A475V","spike_mutations":"A475V"}}}]}]},{"name":"NODE_0000754","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.27"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.27"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.693706360119095}},"branch_attrs":{"mutations":{"nuc":["C44T","C5031T"],"ORF1a":["T1589I"]},"labels":{"aa":"ORF1a: T1589I"}},"children":[{"name":"HK.27","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.27"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.27"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.693706360119095}},"branch_attrs":{"mutations":{}}},{"name":"internal_188bb1dd","node_attrs":{"div":48,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.27.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.27.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.40048983181875}},"branch_attrs":{"mutations":{"nuc":["G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}},"children":[{"name":"HK.27.1","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.27.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.27.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.40048983181875}},"branch_attrs":{"mutations":{}}},{"name":"HK.27.1.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.27.1.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-28"},"Nextclade_pango":{"value":"HK.27.1.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.91092161368628}},"branch_attrs":{"mutations":{"nuc":["G21604T"],"S":["Q14H"]},"labels":{"aa":"S: Q14H","spike_mutations":"Q14H"}}}]}]},{"name":"internal_ec31cc5d","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.606650876449635}},"branch_attrs":{"mutations":{"nuc":["C2644T"]}},"children":[{"name":"HK.33","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.33"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HK.33"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.119789596167991}},"branch_attrs":{"mutations":{"nuc":["G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}}},{"name":"internal_04291e2c","node_attrs":{"div":52,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.34"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.34"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{"nuc":["C44T","C3457T","G11243A","T16383A","T22119C","C25614T"],"ORF1a":["V3660M"],"S":["F186S"]},"labels":{"aa":"ORF1a: V3660M; S: F186S","spike_mutations":"F186S"}},"children":[{"name":"HK.34","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.34"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HK.34"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-6.208799985016359}},"branch_attrs":{"mutations":{}}},{"name":"HK.34.1","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.319590768088469"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.34.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18525999999999987"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HK.34.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.254557475577034}},"branch_attrs":{"mutations":{"nuc":["C207T","C19011T","A22629C"],"S":["K356T"]},"labels":{"aa":"S: K356T","spike_mutations":"K356T"}}}]}]},{"name":"internal_eea7306c","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"EG.5.1.1"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-3.6792294098698797}},"branch_attrs":{"mutations":{"nuc":["C11779T"]}},"children":[{"name":"HK.14","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.14"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.157631660992367}},"branch_attrs":{"mutations":{"nuc":["C44T","C6781T","C17802T","G22927C"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}}},{"name":"HK.15","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.15"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.15"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.876353256762211}},"branch_attrs":{"mutations":{"nuc":["A3237G","G22346A"],"ORF1a":["Q991R"],"S":["A262T"]},"labels":{"aa":"ORF1a: Q991R; S: A262T","spike_mutations":"A262T"}}},{"name":"HK.16","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.16"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-10-13"},"Nextclade_pango":{"value":"HK.16"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.164364796756263}},"branch_attrs":{"mutations":{"nuc":["T22654C","C23613T","G25352T","C28472T"],"N":["P67S"],"S":["A684V","V1264L"]},"labels":{"aa":"N: P67S; S: A684V, V1264L","spike_mutations":"A684V, V1264L"}}},{"name":"HK.9","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0206848265031803"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"0.18829999999999997"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"HK.9"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.66214946869129}},"branch_attrs":{"mutations":{"nuc":["C15720T","G22131A"],"S":["R190K"]},"labels":{"aa":"S: R190K","spike_mutations":"R190K"}}},{"name":"internal_57386ce8","node_attrs":{"div":47,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.8"},"clade_membership":{"value":"23F"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23F (EG.5.1)"},"Nextclade_pango":{"value":"HK.8"},"clade_nextstrain":{"value":"23F"},"placement_prior":{"value":-4.8032072620616075}},"branch_attrs":{"mutations":{"nuc":["G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","spike_mutations":"L455F"}},"children":[{"name":"HK.8","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-01"},"Nextclade_pango":{"value":"HK.8"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.8032072620616075}},"branch_attrs":{"mutations":{}}},{"name":"HK.8.1","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.8.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23F"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23F (EG.5.1)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"HK.8.1"},"clade_nextstrain":{"value":"23F"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.697840114991266}},"branch_attrs":{"mutations":{"nuc":["G25019T","C25904T"],"ORF3a":["S171L"],"S":["D1153Y"]},"labels":{"aa":"ORF3a: S171L; S: D1153Y","spike_mutations":"D1153Y"}}}]}]},{"name":"internal_HK.3","node_attrs":{"div":46,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3"},"clade_membership":{"value":"23H"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23H (HK.3)"},"Nextclade_pango":{"value":"HK.3"},"clade_nextstrain":{"value":"23H"},"placement_prior":{"value":-3.1974023692055895}},"branch_attrs":{"mutations":{"nuc":["G22927T"],"S":["L455F"]},"labels":{"aa":"S: L455F","clade":"23H","spike_mutations":"L455F"}},"children":[{"name":"HK.3","node_attrs":{"div":46,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-07-23"},"Nextclade_pango":{"value":"HK.3"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":74},"qc.overallScore":{"value":0},"placement_prior":{"value":-3.1974023692055895}},"branch_attrs":{"mutations":{}}},{"name":"HK.3.1","node_attrs":{"div":47,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-08-24"},"Nextclade_pango":{"value":"HK.3.1"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.006695365579633}},"branch_attrs":{"mutations":{"nuc":["C22033A"],"S":["F157L"]},"labels":{"aa":"S: F157L","spike_mutations":"F157L"}}},{"name":"HK.3.10","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.10"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.3.10"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.978340606648043}},"branch_attrs":{"mutations":{"nuc":["T18351C","G24794T"],"S":["A1078S"]},"labels":{"aa":"S: A1078S","spike_mutations":"A1078S"}}},{"name":"HK.3.11","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.11"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.3.11"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.90776110089479}},"branch_attrs":{"mutations":{"nuc":["C2395T","C12415T","C17397A","T22119C"],"S":["F186S"]},"labels":{"aa":"S: F186S","spike_mutations":"F186S"}}},{"name":"HK.3.12","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.12"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HK.3.12"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.001289237292646}},"branch_attrs":{"mutations":{"nuc":["C10834T","G23624A","G29781T"],"S":["A688T"]},"labels":{"aa":"S: A688T","spike_mutations":"A688T"}}},{"name":"HK.3.13","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.13"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-12-02"},"Nextclade_pango":{"value":"HK.3.13"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.841332897185278}},"branch_attrs":{"mutations":{"nuc":["T221C","C14889T","A21603G"],"S":["Q14R"]},"labels":{"aa":"S: Q14R","spike_mutations":"Q14R"}}},{"name":"HK.3.14","node_attrs":{"div":50,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.1138480231788825"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.14"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"3-7 days"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-1.0860600000000002"},"designation_date":{"value":"2024-01-10"},"Nextclade_pango":{"value":"HK.3.14"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.501822820195107}},"branch_attrs":{"mutations":{"nuc":["C44T","T20600C","C22986T","C29762T"],"ORF1b":["I2378T"],"S":["A475V"]},"labels":{"aa":"ORF1b: I2378T; S: A475V","spike_mutations":"A475V"}}},{"name":"HK.3.3","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.3"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"HK.3.3"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.585792986487014}},"branch_attrs":{"mutations":{"nuc":["C44T","C22329T","C29364T"],"N":["P364L"],"S":["S256L"]},"labels":{"aa":"N: P364L; S: S256L","spike_mutations":"S256L"}}},{"name":"HK.3.4","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.4"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HK.3.4"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.416405428253846}},"branch_attrs":{"mutations":{"nuc":["C934T","C1284T","T13324C","C23987T","C27630T"],"ORF1a":["T340I"],"S":["P809S"]},"labels":{"aa":"ORF1a: T340I; S: P809S","spike_mutations":"P809S"}}},{"name":"HK.3.5","node_attrs":{"div":52,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.5"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HK.3.5"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.327539368284152}},"branch_attrs":{"mutations":{"nuc":["C44T","G3893A","C11008T","T18324C","C22082T","C27889T"],"ORF1a":["E1210K"],"S":["P174S"]},"labels":{"aa":"ORF1a: E1210K; S: P174S","spike_mutations":"P174S"}}},{"name":"HK.3.6","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.6"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HK.3.6"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.167391139161464}},"branch_attrs":{"mutations":{"nuc":["C4345T","T8870C","G22103A"],"S":["G181R"]},"labels":{"aa":"S: G181R","spike_mutations":"G181R"}}},{"name":"HK.3.7","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.7"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-10-15"},"Nextclade_pango":{"value":"HK.3.7"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.650333009592907}},"branch_attrs":{"mutations":{"nuc":["C44T","G22073A"],"S":["V171I"]},"labels":{"aa":"S: V171I","spike_mutations":"V171I"}}},{"name":"HK.3.8","node_attrs":{"div":48,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.8"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"HK.3.8"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":76},"qc.overallScore":{"value":0},"placement_prior":{"value":-5.093453258394463}},"branch_attrs":{"mutations":{"nuc":["C14195A","G23222A"],"ORF1b":["T243N"],"S":["E554K"]},"labels":{"aa":"ORF1b: T243N; S: E554K","spike_mutations":"E554K"}}},{"name":"HK.3.9","node_attrs":{"div":51,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.9"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.3.9"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.489051103158332}},"branch_attrs":{"mutations":{"nuc":["C44T","T22849C","C23757T","A28877T","G28878C"],"S":["T732I"]},"labels":{"aa":"S: T732I","spike_mutations":"T732I"}}},{"name":"internal_ca7dc568","node_attrs":{"div":49,"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.2"},"clade_membership":{"value":"23H"},"clade_who":{"value":"Omicron"},"clade_display":{"value":"23H (HK.3)"},"Nextclade_pango":{"value":"HK.3.2"},"clade_nextstrain":{"value":"23H"},"placement_prior":{"value":-4.039321398222209}},"branch_attrs":{"mutations":{"nuc":["G1T","C853T","C21602A"],"S":["Q14K"]},"labels":{"aa":"S: Q14K","spike_mutations":"Q14K"}},"children":[{"name":"HK.3.2","node_attrs":{"div":49,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":">8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-09-10"},"Nextclade_pango":{"value":"HK.3.2"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":75},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.039321398222209}},"branch_attrs":{"mutations":{}}},{"name":"HK.3.2.1","node_attrs":{"div":55,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.2.1"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-21"},"Nextclade_pango":{"value":"HK.3.2.1"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":80},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.606735549436864}},"branch_attrs":{"mutations":{"nuc":["A708C","C2106T","C10969T","C20594T","G23593T","G28056A"],"ORF1a":["E148A","T614I"],"ORF1b":["T2376I"],"ORF8":["A55T"],"S":["Q677H"]},"labels":{"aa":"ORF1a: E148A, T614I; ORF1b: T2376I; ORF8: A55T; S: Q677H","spike_mutations":"Q677H"}}},{"name":"HK.3.2.2","node_attrs":{"div":56,"totalAminoacidDeletions":{"value":13},"immune_escape":{"value":"1.0391501194324104"},"partiallyAliased":{"value":"XBB.1.9.2.5.1.1.3.2.2"},"qc.stopCodons.totalStopCodons":{"value":0},"clade_membership":{"value":"23H"},"qc.frameShifts.totalFrameShifts":{"value":0},"clade_who":{"value":"Omicron"},"designation_recency":{"value":"4-8 weeks"},"clade_display":{"value":"23H (HK.3)"},"ace2_binding":{"value":"-0.36673000000000006"},"designation_date":{"value":"2023-11-24"},"Nextclade_pango":{"value":"HK.3.2.2"},"clade_nextstrain":{"value":"23H"},"totalAminoacidSubstitutions":{"value":79},"qc.overallScore":{"value":0},"placement_prior":{"value":-4.810852865563699}},"branch_attrs":{"mutations":{"nuc":["C100T","C1348T","C4543T","G7290A","A22115G","T25496C","A27894T"],"ORF1a":["G2342E"],"ORF3a":["I35T"],"ORF8":["M1L"],"S":["N185D"]},"labels":{"aa":"ORF1a: G2342E; ORF3a: I35T; ORF8: M1L; S: N185D","spike_mutations":"N185D"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}}
